Author: grossb
Date: 2010-11-12 12:56:08 -0800 (Fri, 12 Nov 2010)
New Revision: 22823
Modified:
coreplugins/branches/Cyto-2.6.x_release_branch/cPath2/src/org/cytoscape/coreplugin/cpath2/cytoscape/BinarySifVisualStyleUtil.java
Log:
update to support latest binary interaction types from paxtools library - this
is required so that edges get proper color
Modified:
coreplugins/branches/Cyto-2.6.x_release_branch/cPath2/src/org/cytoscape/coreplugin/cpath2/cytoscape/BinarySifVisualStyleUtil.java
===================================================================
---
coreplugins/branches/Cyto-2.6.x_release_branch/cPath2/src/org/cytoscape/coreplugin/cpath2/cytoscape/BinarySifVisualStyleUtil.java
2010-11-11 22:50:25 UTC (rev 22822)
+++
coreplugins/branches/Cyto-2.6.x_release_branch/cPath2/src/org/cytoscape/coreplugin/cpath2/cytoscape/BinarySifVisualStyleUtil.java
2010-11-12 20:56:08 UTC (rev 22823)
@@ -23,16 +23,13 @@
public final static String BINARY_SIF_VISUAL_STYLE =
"Binary_SIF_Version_1";
public final static String BINARY_NETWORK = "BINARY_NETWORK";
public final static String COMPONENT_OF = "COMPONENT_OF";
- public final static String COMPONENT_IN_SAME = "COMPONENT_IN_SAME";
+ public final static String IN_SAME_COMPONENT = "IN_SAME_COMPONENT";
public final static String SEQUENTIAL_CATALYSIS = "SEQUENTIAL_CATALYSIS";
- public final static String CONTROLS_STATE_CHANGE = "CONTROLS_STATE_CHANGE";
- public final static String CONTROLS_METABOLIC_CHANGE =
"CONTROLS_METABOLIC_CHANGE";
- public final static String PARTICIPATES_CONVERSION =
"PARTICIPATES_CONVERSION";
- public final static String PARTICIPATES_INTERACTION =
"PARTICIPATES_INTERACTION";
- public final static String CO_CONTROL_INDEPENDENT_SIMILAR =
"CO_CONTROL_INDEPENDENT_SIMILAR";
- public final static String CO_CONTROL_INDEPENDENT_ANTI =
"CO_CONTROL_INDEPENDENT_ANTI";
- public final static String CO_CONTROL_DEPENDENT_SIMILAR =
"CO_CONTROL_DEPENDENT_SIMILAR";
- public final static String CO_CONTROL_DEPENDENT_ANTI =
"CO_CONTROL_DEPENDENT_ANTI";
+ public final static String STATE_CHANGE = "STATE_CHANGE";
+ public final static String METABOLIC_CATALYSIS = "METABOLIC_CATALYSIS";
+ public final static String REACTS_WITH = "REACTS_WITH";
+ public final static String INTERACTS_WITH = "INTERACTS_WITH";
+ public final static String CO_CONTROL = "CO_CONTROL";
private final static String COMPLEX = "Complex";
/**
@@ -114,16 +111,13 @@
DiscreteMapping discreteMapping = new
DiscreteMapping(Color.BLACK,
Semantics.INTERACTION, ObjectMapping.EDGE_MAPPING);
- discreteMapping.putMapValue(PARTICIPATES_CONVERSION,
Color.decode("#ccc1da"));
- discreteMapping.putMapValue(PARTICIPATES_INTERACTION,
Color.decode("#7030a0"));
- discreteMapping.putMapValue(CONTROLS_STATE_CHANGE,
Color.decode("#0070c0"));
- discreteMapping.putMapValue(CONTROLS_METABOLIC_CHANGE,
Color.decode("#00b0f0"));
+ discreteMapping.putMapValue(REACTS_WITH, Color.decode("#ccc1da"));
+ discreteMapping.putMapValue(INTERACTS_WITH, Color.decode("#7030a0"));
+ discreteMapping.putMapValue(STATE_CHANGE, Color.decode("#0070c0"));
+ discreteMapping.putMapValue(METABOLIC_CATALYSIS,
Color.decode("#00b0f0"));
discreteMapping.putMapValue(SEQUENTIAL_CATALYSIS,
Color.decode("#7f7f7f"));
- discreteMapping.putMapValue(CO_CONTROL_DEPENDENT_ANTI,
Color.decode("#ff0000"));
- discreteMapping.putMapValue(CO_CONTROL_INDEPENDENT_ANTI,
Color.decode("#fd95a6"));
- discreteMapping.putMapValue(CO_CONTROL_DEPENDENT_SIMILAR,
Color.decode("#00b050"));
- discreteMapping.putMapValue(CO_CONTROL_INDEPENDENT_SIMILAR,
Color.decode("#92d050"));
- discreteMapping.putMapValue(COMPONENT_IN_SAME,
Color.decode("#ffff00"));
+ discreteMapping.putMapValue(CO_CONTROL, Color.decode("#00b050"));
+ discreteMapping.putMapValue(IN_SAME_COMPONENT,
Color.decode("#ffff00"));
discreteMapping.putMapValue(COMPONENT_OF, Color.decode("#ffc000"));
// create and set edge label calculator in edge appearance calculator
@@ -141,8 +135,8 @@
Semantics.INTERACTION, ObjectMapping.EDGE_MAPPING);
discreteMapping.putMapValue(COMPONENT_OF, ArrowShape.ARROW);
- discreteMapping.putMapValue(CONTROLS_STATE_CHANGE, ArrowShape.ARROW);
- discreteMapping.putMapValue(CONTROLS_METABOLIC_CHANGE,
ArrowShape.ARROW);
+ discreteMapping.putMapValue(STATE_CHANGE, ArrowShape.ARROW);
+ discreteMapping.putMapValue(METABOLIC_CATALYSIS, ArrowShape.ARROW);
discreteMapping.putMapValue(SEQUENTIAL_CATALYSIS, ArrowShape.ARROW);
// create and set edge label calculator in edge appearance calculator
--
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