See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/6/>
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<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal/builtins//class-use/Upper.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal/builtins//class-use/BList.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal/builtins//class-use/Text.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal/builtins//class-use/SList.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal/builtins//class-use/Error.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal/builtins//class-use/NormDist.html...> 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<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal/builtins//class-use/Round.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal/builtins//class-use/GeoMean.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal/builtins//class-use/ATan2.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal/builtins//class-use/Len.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal/builtins//class-use/Cosh.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal/builtins//class-use/Largest.html...> 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<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal/builtins//class-use/First.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal/builtins//class-use/Sin.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal/builtins//class-use/ACos.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal/builtins//class-use/Value.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal/builtins//class-use/Cos.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal/builtins//class-use/Sum.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal/builtins//class-use/Nth.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal/builtins//class-use/Sign.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal/builtins//class-use/Tan.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal/builtins//class-use/And.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal/builtins//class-use/IList.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal/builtins//class-use/Left.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal/builtins//class-use/Log.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal/builtins//class-use/Degrees.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal/builtins//class-use/Average.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal/builtins//class-use/Substitute.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal/parse_tree//class-use/UnaryOpNode.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal/parse_tree//class-use/BooleanConstantNode.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal/parse_tree//class-use/BinOpNode.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal/parse_tree//class-use/FConvNode.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal/parse_tree//class-use/IdentNode.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal/parse_tree//class-use/StringConstantNode.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal/parse_tree//class-use/FuncCallNode.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal/parse_tree//class-use/FloatConstantNode.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal/parse_tree//class-use/SConvNode.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal//class-use/EqnCompilerImpl.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal//class-use/Token.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal//class-use/Tokeniser.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal//class-use/EqnParserImpl.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal//package-use.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal/builtins//package-use.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal/interpreter//package-use.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/org/cytoscape/equations/internal/parse_tree//package-use.html...> Building index for all the packages and classes... Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/overview-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/index-all.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/deprecated-list.html...> Building index for all classes... Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/allclasses-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/allclasses-noframe.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/index.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/overview-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/help-doc.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/apidocs/stylesheet.css...> 1 warning [WARNING] Javadoc Warnings [WARNING] javadoc: warning - Error fetching URL: http://java.sun.com/javase/6/docs/api/package-list [INFO] Building jar: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/equations-impl-1.0-SNAPSHOT-javadoc.jar> [INFO] Preparing source:jar [WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation. [INFO] No goals needed for project - skipping [INFO] [source:jar {execution: attach-sources}] [INFO] Building jar: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/equations-impl-1.0-SNAPSHOT-sources.jar> [INFO] [install:install] [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/equations-impl-1.0-SNAPSHOT.jar> to /home/bturner/.m2/repository/org/cytoscape/equations-impl/1.0-SNAPSHOT/equations-impl-1.0-SNAPSHOT.jar [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/equations-impl-1.0-SNAPSHOT-javadoc.jar> to /home/bturner/.m2/repository/org/cytoscape/equations-impl/1.0-SNAPSHOT/equations-impl-1.0-SNAPSHOT-javadoc.jar [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/equations-impl-1.0-SNAPSHOT-sources.jar> to /home/bturner/.m2/repository/org/cytoscape/equations-impl/1.0-SNAPSHOT/equations-impl-1.0-SNAPSHOT-sources.jar [INFO] [bundle:install] [INFO] Parsing file:/home/bturner/.m2/repository/repository.xml [INFO] Installing org/cytoscape/equations-impl/1.0-SNAPSHOT/equations-impl-1.0-SNAPSHOT.jar [INFO] Writing OBR metadata [INFO] [deploy:deploy] [INFO] Retrieving previous build number from snapshots Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/equations-impl/1.0-SNAPSHOT/equations-impl-1.0-20101114.011718-3.jar 116K uploaded (equations-impl-1.0-20101114.011718-3.jar) [INFO] Retrieving previous metadata from snapshots [INFO] Uploading repository metadata for: 'artifact org.cytoscape:equations-impl' [INFO] Uploading project information for equations-impl 1.0-20101114.011718-3 [INFO] Retrieving previous metadata from snapshots [INFO] Uploading repository metadata for: 'snapshot org.cytoscape:equations-impl:1.0-SNAPSHOT' [INFO] Retrieving previous build number from snapshots Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/equations-impl/1.0-SNAPSHOT/equations-impl-1.0-20101114.011718-3-javadoc.jar 376K uploaded (equations-impl-1.0-20101114.011718-3-javadoc.jar) [INFO] Retrieving previous build number from snapshots Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/equations-impl/1.0-SNAPSHOT/equations-impl-1.0-20101114.011718-3-sources.jar 129K uploaded (equations-impl-1.0-20101114.011718-3-sources.jar) [INFO] [bundle:deploy] [INFO] Remote OBR update disabled (enable with -DremoteOBR) [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Equation Impl/modules/org.cytoscape$equations-impl/builds/2010-11-13_20-16-24/archive/org.cytoscape/equations-impl/1.0-SNAPSHOT/pom.xml [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/equations-impl-1.0-SNAPSHOT.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Equation Impl/modules/org.cytoscape$equations-impl/builds/2010-11-13_20-16-24/archive/org.cytoscape/equations-impl/1.0-20101114.011718-3/equations-impl-1.0-SNAPSHOT.jar [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/equations-impl-1.0-SNAPSHOT-javadoc.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Equation Impl/modules/org.cytoscape$equations-impl/builds/2010-11-13_20-16-24/archive/org.cytoscape/equations-impl/1.0-20101114.011718-3/equations-impl-1.0-SNAPSHOT-javadoc.jar [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Impl/ws/trunk/target/equations-impl-1.0-SNAPSHOT-sources.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Equation Impl/modules/org.cytoscape$equations-impl/builds/2010-11-13_20-16-24/archive/org.cytoscape/equations-impl/1.0-20101114.011718-3/equations-impl-1.0-SNAPSHOT-sources.jar [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESSFUL [INFO] ------------------------------------------------------------------------ [INFO] Total time: 53 seconds [INFO] Finished at: Sat Nov 13 20:17:20 EST 2010 [INFO] Final Memory: 66M/727M [INFO] ------------------------------------------------------------------------ Sending e-mails to: [email protected] channel stopped [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.equations-impl [INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar] [INFO] Sonar host: http://localhost:8021/sonar [INFO] Sonar version: 2.2 [INFO] [sonar-core:internal] [INFO] Database dialect class org.sonar.api.database.dialect.MySql [INFO] ------------- Analyzing org.cytoscape.equations-impl [INFO] Selected quality profile : Cytoscape, language=java [INFO] Configure maven plugins... [INFO] Sensor JavaSourceImporter... [INFO] Sensor JavaSourceImporter done: 1023 ms [INFO] Sensor AsynchronousMeasuresSensor... [INFO] Sensor AsynchronousMeasuresSensor done: 30 ms [INFO] Sensor SquidSensor... [INFO] Java AST scan... [INFO] Java AST scan done: 853 ms [INFO] Java bytecode scan... [WARN] Class '[Lorg/cytoscape/equations/internal/Token;' is not accessible through the ClassLoader. [WARN] Class '[Lorg/cytoscape/equations/internal/interpreter/Instruction;' is not accessible through the ClassLoader. [INFO] Java bytecode scan done: 177 ms [INFO] Squid extraction... [INFO] Package design analysis... [INFO] Package design analysis done: 57 ms [INFO] Squid extraction done: 1167 ms [INFO] Sensor SquidSensor done: 2268 ms [INFO] Sensor ProfileSensor... [INFO] Sensor ProfileSensor done: 25 ms [INFO] Sensor ProjectLinksSensor... [INFO] Sensor ProjectLinksSensor done: 6 ms [INFO] Sensor VersionEventsSensor... [INFO] Sensor VersionEventsSensor done: 43 ms [INFO] Sensor Maven dependencies... [INFO] Sensor Maven dependencies done: 66 ms [INFO] Execute maven plugin findbugs-maven-plugin... [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.equations-impl [INFO] task-segment: [org.codehaus.mojo:findbugs-maven-plugin:2.3.1:findbugs] [INFO] ------------------------------------------------------------------------ [INFO] Preparing findbugs:findbugs [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Can not execute Sonar Embedded error: Unable to execute maven plugin The plugin 'org.codehaus.mojo:cobertura-maven-plugin' does not exist or no valid version could be found [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 10 seconds [INFO] Finished at: Sat Nov 13 20:17:42 EST 2010 [INFO] Final Memory: 53M/599M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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