See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property%20API/54/>
------------------------------------------ [...truncated 715 lines...] Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property%20API/ws/trunk/target/apidocs/overview-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property%20API/ws/trunk/target/apidocs/index-all.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property%20API/ws/trunk/target/apidocs/deprecated-list.html...> Building index for all classes... Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property%20API/ws/trunk/target/apidocs/allclasses-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property%20API/ws/trunk/target/apidocs/allclasses-noframe.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property%20API/ws/trunk/target/apidocs/index.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property%20API/ws/trunk/target/apidocs/overview-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property%20API/ws/trunk/target/apidocs/help-doc.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property%20API/ws/trunk/target/apidocs/stylesheet.css...> 4 warnings [WARNING] Javadoc Warnings [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property%20API/ws/trunk/src/main/java/org/cytoscape/property/bookmark/BookmarksUtil.java>:25: warning - @return tag has no arguments. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property%20API/ws/trunk/src/main/java/org/cytoscape/property/bookmark/BookmarksUtil.java>:16: warning - @return tag has no arguments. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property%20API/ws/trunk/src/main/javadoc/org/cytoscape/property/session/package.html>: warning - Tag @link: reference not found: org.cytoscape.session.CySession [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property%20API/ws/trunk/src/main/javadoc/org/cytoscape/property/session/package.html>: warning - Tag @link: reference not found: org.cytoscape.session.CySession [INFO] Building jar: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property%20API/ws/trunk/target/property-api-3.0.0-alpha2-SNAPSHOT-javadoc.jar> [INFO] Preparing source:jar [WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation. [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property%20API/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Property API/modules/org.cytoscape$property-api/builds/2010-11-13_20-28-57/archive/org.cytoscape/property-api/3.0.0-alpha2-SNAPSHOT/pom.xml [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property%20API/ws/trunk/target/property-api-3.0.0-alpha2-SNAPSHOT.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Property API/modules/org.cytoscape$property-api/builds/2010-11-13_20-28-57/archive/org.cytoscape/property-api/3.0.0-alpha2-SNAPSHOT/property-api-3.0.0-alpha2-SNAPSHOT.jar [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property%20API/ws/trunk/target/property-api-3.0.0-alpha2-SNAPSHOT-javadoc.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Property API/modules/org.cytoscape$property-api/builds/2010-11-13_20-28-57/archive/org.cytoscape/property-api/3.0.0-alpha2-SNAPSHOT/property-api-3.0.0-alpha2-SNAPSHOT-javadoc.jar [INFO] [jaxb2:generate {execution: session}] [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/R1/tools/java/jdk1.6.0_20/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.1]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-raw:jar:0.7.4:runtime, org.codehaus.plexus:plexus-utils:jar:1.1:runtime, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:runtime, org.sonatype.plexus:plexus-build-api:jar:0.0.6:runtime, com.sun.xml.bind:jaxb-impl:jar:2.1.13:runtime, javax.xml.bind:jaxb-api:jar:2.1:runtime, javax.xml.stream:stax-api:jar:1.0-2:runtime, javax.activation:activation:jar:1.1:runtime, org.jvnet.jaxb2_commons:jaxb2-basics-jaxb-xjc:jar:2.1.13.MR2:runtime, com.sun.codemodel:codemodel:jar:2.3:runtime, com.sun.xml.dtd-parser:dtd-parser:jar:1.1:runtime, com.sun.istack:istack-commons-tools:jar:2.2.MR1:runtime, org.apache.ant:ant:jar:1.7.0:runtime, org.apache.ant:ant-launcher:jar:1.7.0:runtime, sun.jdk:tools:jar:1.5.0:system, relaxngDatatype:relaxngDatatype:jar:20020414:runtime, com.sun.org.apache.xml.internal:resolver:jar:20050927:runtime, org.kohsuke.rngom:rngom:jar:20100718:runtime, com.sun.xsom:xsom:jar:20100725:runtime] [INFO] schemaLanguage:null [INFO] schemaDirectory:<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property%20API/ws/trunk/src/main/resources/xsd> [INFO] schemaIncludes:[Ljava.lang.String;@7eb879e4 [INFO] schemaExcludes:null [INFO] bindingDirectory:<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property%20API/ws/trunk/src/main/resources/xsd> [INFO] bindingIncludes:[Ljava.lang.String;@14aa8bb [INFO] bindingExcludes:null [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:com.sun.org.apache.xml.internal.resolver.tools.CatalogResolver [INFO] generatePackage:org.cytoscape.property.session [INFO] generateDirectory:<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property%20API/ws/trunk/target/generated-sources/xjc> [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:true [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property%20API/ws/trunk/target/generated-sources/xjc/META-INF/sun-jaxb.episode> [INFO] episode:true [INFO] classpathElements:[<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property%20API/ws/trunk/target/classes,> /home/bturner/.m2/repository/org/ops4j/pax/logging/pax-logging-api/1.5.2/pax-logging-api-1.5.2.jar] [INFO] plugins:null [INFO] episodes:null [INFO] xjcPlugins:null [INFO] episodes:null [INFO] specVersion:2.1 [INFO] schemaFiles (calculated):[<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property%20API/ws/trunk/src/main/resources/xsd/cysession.xsd]> [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] The schemaLanguage setting was not defined, assuming 'AUTODETECT'. Using java.util.ServiceLoader [INFO] Parsing input schema(s)... [INFO] Compiling input schema(s)... [INFO] Writing output to [<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property%20API/ws/trunk/target/generated-sources/xjc].> [INFO] XJC writing: org/cytoscape/property/session/Child.java [INFO] XJC writing: org/cytoscape/property/session/Cysession.java [INFO] XJC writing: org/cytoscape/property/session/Cytopanel.java [INFO] XJC writing: org/cytoscape/property/session/Cytopanels.java [INFO] XJC writing: org/cytoscape/property/session/Desktop.java [INFO] XJC writing: org/cytoscape/property/session/DesktopSize.java [INFO] XJC writing: org/cytoscape/property/session/Edge.java [INFO] XJC writing: org/cytoscape/property/session/HiddenEdges.java [INFO] XJC writing: org/cytoscape/property/session/HiddenNodes.java [INFO] XJC writing: org/cytoscape/property/session/Network.java [INFO] XJC writing: org/cytoscape/property/session/NetworkFrame.java [INFO] XJC writing: org/cytoscape/property/session/NetworkFrames.java [INFO] XJC writing: org/cytoscape/property/session/NetworkTree.java [INFO] XJC writing: org/cytoscape/property/session/Node.java [INFO] XJC writing: org/cytoscape/property/session/ObjectFactory.java [INFO] XJC writing: org/cytoscape/property/session/Ontology.java [INFO] XJC writing: org/cytoscape/property/session/OntologyServer.java [INFO] XJC writing: org/cytoscape/property/session/Panel.java [INFO] XJC writing: org/cytoscape/property/session/Panels.java [INFO] XJC writing: org/cytoscape/property/session/Parent.java [INFO] XJC writing: org/cytoscape/property/session/Plugin.java [INFO] XJC writing: org/cytoscape/property/session/Plugins.java [INFO] XJC writing: org/cytoscape/property/session/SelectedEdges.java [INFO] XJC writing: org/cytoscape/property/session/SelectedNodes.java [INFO] XJC writing: org/cytoscape/property/session/Server.java [INFO] XJC writing: org/cytoscape/property/session/SessionState.java [INFO] XJC writing: org/cytoscape/property/session/ViewableNodes.java [INFO] Finished execution. [INFO] [jaxb2:generate {execution: bookmarks}] [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/R1/tools/java/jdk1.6.0_20/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.1]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-raw:jar:0.7.4:runtime, org.codehaus.plexus:plexus-utils:jar:1.1:runtime, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:runtime, org.sonatype.plexus:plexus-build-api:jar:0.0.6:runtime, com.sun.xml.bind:jaxb-impl:jar:2.1.13:runtime, javax.xml.bind:jaxb-api:jar:2.1:runtime, javax.xml.stream:stax-api:jar:1.0-2:runtime, javax.activation:activation:jar:1.1:runtime, org.jvnet.jaxb2_commons:jaxb2-basics-jaxb-xjc:jar:2.1.13.MR2:runtime, com.sun.codemodel:codemodel:jar:2.3:runtime, com.sun.xml.dtd-parser:dtd-parser:jar:1.1:runtime, com.sun.istack:istack-commons-tools:jar:2.2.MR1:runtime, org.apache.ant:ant:jar:1.7.0:runtime, org.apache.ant:ant-launcher:jar:1.7.0:runtime, sun.jdk:tools:jar:1.5.0:system, relaxngDatatype:relaxngDatatype:jar:20020414:runtime, com.sun.org.apache.xml.internal:resolver:jar:20050927:runtime, org.kohsuke.rngom:rngom:jar:20100718:runtime, com.sun.xsom:xsom:jar:20100725:runtime] [INFO] schemaLanguage:null [INFO] schemaDirectory:<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property%20API/ws/trunk/src/main/resources/xsd> [INFO] schemaIncludes:[Ljava.lang.String;@5801b03c [INFO] schemaExcludes:null [INFO] bindingDirectory:<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property%20API/ws/trunk/src/main/resources/xsd> [INFO] bindingIncludes:[Ljava.lang.String;@56d96047 [INFO] bindingExcludes:null [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:com.sun.org.apache.xml.internal.resolver.tools.CatalogResolver [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property%20API/ws/trunk/target/generated-sources/xjc> [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:true [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property%20API/ws/trunk/target/generated-sources/xjc/META-INF/sun-jaxb.episode> [INFO] episode:true [INFO] classpathElements:[<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property%20API/ws/trunk/target/classes,> /home/bturner/.m2/repository/org/ops4j/pax/logging/pax-logging-api/1.5.2/pax-logging-api-1.5.2.jar] [INFO] plugins:null [INFO] episodes:null [INFO] xjcPlugins:null [INFO] episodes:null [INFO] specVersion:2.1 [INFO] schemaFiles (calculated):[<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property%20API/ws/trunk/src/main/resources/xsd/bookmarks.xsd,> <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property%20API/ws/trunk/src/main/resources/xsd/xlinks-2001.xsd]> [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] The schemaLanguage setting was not defined, assuming 'AUTODETECT'. Using java.util.ServiceLoader [INFO] Parsing input schema(s)... [INFO] Compiling input schema(s)... [INFO] Writing output to [<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property%20API/ws/trunk/target/generated-sources/xjc].> [INFO] XJC writing: org/cytoscape/property/bookmark/Attribute.java [INFO] XJC writing: org/cytoscape/property/bookmark/Bookmarks.java [INFO] XJC writing: org/cytoscape/property/bookmark/Category.java [INFO] XJC writing: org/cytoscape/property/bookmark/DataSource.java [INFO] XJC writing: org/cytoscape/property/bookmark/ObjectFactory.java [INFO] Finished execution. [INFO] [source:jar {execution: attach-sources}] [INFO] Building jar: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property%20API/ws/trunk/target/property-api-3.0.0-alpha2-SNAPSHOT-sources.jar> [INFO] [install:install] [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property%20API/ws/trunk/target/property-api-3.0.0-alpha2-SNAPSHOT.jar> to /home/bturner/.m2/repository/org/cytoscape/property-api/3.0.0-alpha2-SNAPSHOT/property-api-3.0.0-alpha2-SNAPSHOT.jar [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property%20API/ws/trunk/target/property-api-3.0.0-alpha2-SNAPSHOT-javadoc.jar> to /home/bturner/.m2/repository/org/cytoscape/property-api/3.0.0-alpha2-SNAPSHOT/property-api-3.0.0-alpha2-SNAPSHOT-javadoc.jar [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property%20API/ws/trunk/target/property-api-3.0.0-alpha2-SNAPSHOT-sources.jar> to /home/bturner/.m2/repository/org/cytoscape/property-api/3.0.0-alpha2-SNAPSHOT/property-api-3.0.0-alpha2-SNAPSHOT-sources.jar [INFO] [bundle:install] [INFO] Parsing file:/home/bturner/.m2/repository/repository.xml [INFO] Installing org/cytoscape/property-api/3.0.0-alpha2-SNAPSHOT/property-api-3.0.0-alpha2-SNAPSHOT.jar [INFO] Writing OBR metadata [INFO] [deploy:deploy] [INFO] Retrieving previous build number from snapshots Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/property-api/3.0.0-alpha2-SNAPSHOT/property-api-3.0.0-alpha2-20101114.013138-18.jar 35K uploaded (property-api-3.0.0-alpha2-20101114.013138-18.jar) [INFO] Uploading project information for property-api 3.0.0-alpha2-20101114.013138-18 [INFO] Retrieving previous metadata from snapshots [INFO] Uploading repository metadata for: 'artifact org.cytoscape:property-api' [INFO] Retrieving previous metadata from snapshots [INFO] Uploading repository metadata for: 'snapshot org.cytoscape:property-api:3.0.0-alpha2-SNAPSHOT' [INFO] Retrieving previous build number from snapshots Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/property-api/3.0.0-alpha2-SNAPSHOT/property-api-3.0.0-alpha2-20101114.013138-18-javadoc.jar 206K uploaded (property-api-3.0.0-alpha2-20101114.013138-18-javadoc.jar) [INFO] Retrieving previous build number from snapshots Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/property-api/3.0.0-alpha2-SNAPSHOT/property-api-3.0.0-alpha2-20101114.013138-18-sources.jar 41K uploaded (property-api-3.0.0-alpha2-20101114.013138-18-sources.jar) [INFO] [bundle:deploy] [INFO] Remote OBR update disabled (enable with -DremoteOBR) [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property%20API/ws/trunk/target/property-api-3.0.0-alpha2-SNAPSHOT.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Property API/modules/org.cytoscape$property-api/builds/2010-11-13_20-28-57/archive/org.cytoscape/property-api/3.0.0-alpha2-20101114.013138-18/property-api-3.0.0-alpha2-SNAPSHOT.jar [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property%20API/ws/trunk/target/property-api-3.0.0-alpha2-SNAPSHOT-javadoc.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Property API/modules/org.cytoscape$property-api/builds/2010-11-13_20-28-57/archive/org.cytoscape/property-api/3.0.0-alpha2-20101114.013138-18/property-api-3.0.0-alpha2-SNAPSHOT-javadoc.jar [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Property%20API/ws/trunk/target/property-api-3.0.0-alpha2-SNAPSHOT-sources.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Property API/modules/org.cytoscape$property-api/builds/2010-11-13_20-28-57/archive/org.cytoscape/property-api/3.0.0-alpha2-20101114.013138-18/property-api-3.0.0-alpha2-SNAPSHOT-sources.jar [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESSFUL [INFO] ------------------------------------------------------------------------ [INFO] Total time: 2 minutes 40 seconds [INFO] Finished at: Sat Nov 13 20:31:40 EST 2010 [INFO] Final Memory: 67M/728M [INFO] ------------------------------------------------------------------------ Sending e-mails to: [email protected] channel stopped [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.property [INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar] [INFO] Sonar host: http://localhost:8021/sonar [INFO] Sonar version: 2.2 [INFO] [sonar-core:internal] [INFO] Database dialect class org.sonar.api.database.dialect.MySql [INFO] ------------- Analyzing org.cytoscape.property [INFO] Selected quality profile : Cytoscape, language=java [INFO] Configure maven plugins... [INFO] Sensor JavaSourceImporter... [INFO] Sensor JavaSourceImporter done: 337 ms [INFO] Sensor AsynchronousMeasuresSensor... [INFO] Sensor AsynchronousMeasuresSensor done: 110 ms [INFO] Sensor SquidSensor... [INFO] Java AST scan... [INFO] Java AST scan done: 230 ms [INFO] Java bytecode scan... [INFO] Java bytecode scan done: 40 ms [INFO] Squid extraction... [INFO] Package design analysis... [INFO] Package design analysis done: 9 ms [INFO] Squid extraction done: 147 ms [INFO] Sensor SquidSensor done: 461 ms [INFO] Sensor ProfileSensor... [INFO] Sensor ProfileSensor done: 25 ms [INFO] Sensor ProjectLinksSensor... [INFO] Sensor ProjectLinksSensor done: 6 ms [INFO] Sensor VersionEventsSensor... [INFO] Sensor VersionEventsSensor done: 35 ms [INFO] Sensor Maven dependencies... [INFO] Sensor Maven dependencies done: 116 ms [INFO] Execute maven plugin findbugs-maven-plugin... [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.property [INFO] task-segment: [org.codehaus.mojo:findbugs-maven-plugin:2.3.1:findbugs] [INFO] ------------------------------------------------------------------------ [INFO] Preparing findbugs:findbugs [INFO] artifact org.jvnet.jaxb2.maven2:maven-jaxb2-plugin: checking for updates from sonar [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Can not execute Sonar Embedded error: Unable to execute maven plugin The plugin 'org.codehaus.mojo:cobertura-maven-plugin' does not exist or no valid version could be found [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 7 seconds [INFO] Finished at: Sat Nov 13 20:31:59 EST 2010 [INFO] Final Memory: 47M/596M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/cytoscape-cvs?hl=en.
