See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/30/>
------------------------------------------ Started by timer Checking out http://chianti.ucsd.edu/svn/core3/sbml-impl/trunk A osgi.bnd A src A src/test A src/test/java A src/test/java/org A src/test/java/org/cytoscape A src/test/java/org/cytoscape/sbml A src/test/java/org/cytoscape/sbml/internal AU src/test/java/org/cytoscape/sbml/internal/SBMLFileFilterTest.java AU src/test/java/org/cytoscape/sbml/internal/SBMLNetworkViewReaderTest.java A src/test/resources AU src/test/resources/BIOMD0000000003.xml A src/main A src/main/java A src/main/java/org A src/main/java/org/cytoscape A src/main/java/org/cytoscape/sbml A src/main/java/org/cytoscape/sbml/internal AU src/main/java/org/cytoscape/sbml/internal/SBMLFileFilter.java AU src/main/java/org/cytoscape/sbml/internal/SBMLNetworkViewReader.java AU src/main/java/org/cytoscape/sbml/internal/SBMLNetworkViewTaskFactory.java A src/main/resources AU pom.xml U . At revision 22836 no change for http://chianti.ucsd.edu/svn/core3/sbml-impl/trunk since the previous build No emails were triggered. Parsing POMs [trunk] $ java -cp /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-agent-1.369.jar:/R1/tools/maven/apache-maven-2.1.0/boot/classworlds-1.1.jar hudson.maven.agent.Main /R1/tools/maven/apache-maven-2.1.0 /R1/resources/webservers/tomcat_2/webapps/hudson/WEB-INF/lib/remoting-1.369.jar /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-interceptor-1.369.jar 42247 /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven2.1-interceptor-1.2.jar <===[HUDSON REMOTING CAPACITY]===> channel started Executing Maven: -B -f <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/ws/trunk/pom.xml> deploy [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.sbml-impl [org.cytoscape.sbml] [INFO] task-segment: [deploy] [INFO] ------------------------------------------------------------------------ [INFO] [resources:resources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty//cytoscape-temp/jsbml/0.8/jsbml-0.8.pom 390b downloaded (jsbml-0.8.pom) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty//cytoscape-temp/biojava/1.7.1/biojava-1.7.1.pom 394b downloaded (biojava-1.7.1.pom) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty//cytoscape-temp/jigsaw/2.2.6/jigsaw-2.2.6.pom 393b downloaded (jigsaw-2.2.6.pom) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty//cytoscape-temp/stax-api/1.0.1/stax-api-1.0.1.pom 395b downloaded (stax-api-1.0.1.pom) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty//cytoscape-temp/stax2-api/3.0.1/stax2-api-3.0.1.pom 396b downloaded (stax2-api-3.0.1.pom) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty//cytoscape-temp/staxmate/2.0.0/staxmate-2.0.0.pom 395b downloaded (staxmate-2.0.0.pom) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty//cytoscape-temp/woodstox-core-lgpl/4.0.5/woodstox-core-lgpl-4.0.5.pom 405b downloaded (woodstox-core-lgpl-4.0.5.pom) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty//cytoscape-temp/xstream/1.3.1/xstream-1.3.1.pom 394b downloaded (xstream-1.3.1.pom) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty//cytoscape-temp/jsbml/0.8/jsbml-0.8.jar 558K downloaded (jsbml-0.8.jar) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty//cytoscape-temp/biojava/1.7.1/biojava-1.7.1.jar 3569K downloaded (biojava-1.7.1.jar) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty//cytoscape-temp/jigsaw/2.2.6/jigsaw-2.2.6.jar 1419K downloaded (jigsaw-2.2.6.jar) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty//cytoscape-temp/stax-api/1.0.1/stax-api-1.0.1.jar 26K downloaded (stax-api-1.0.1.jar) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty//cytoscape-temp/stax2-api/3.0.1/stax2-api-3.0.1.jar 175K downloaded (stax2-api-3.0.1.jar) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty//cytoscape-temp/staxmate/2.0.0/staxmate-2.0.0.jar 76K downloaded (staxmate-2.0.0.jar) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty//cytoscape-temp/woodstox-core-lgpl/4.0.5/woodstox-core-lgpl-4.0.5.jar 476K downloaded (woodstox-core-lgpl-4.0.5.jar) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty//cytoscape-temp/xstream/1.3.1/xstream-1.3.1.jar 428K downloaded (xstream-1.3.1.jar) [INFO] [pax:compile] [INFO] Compiling 3 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/ws/trunk/target/classes> [INFO] [resources:testResources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [pax:testCompile] [INFO] Compiling 2 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/ws/trunk/target/test-classes> [INFO] [surefire:test] [INFO] Surefire report directory: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/ws/trunk/target/surefire-reports> ------------------------------------------------------- T E S T S ------------------------------------------------------- Running org.cytoscape.sbml.internal.SBMLFileFilterTest Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.027 sec Running org.cytoscape.sbml.internal.SBMLNetworkViewReaderTest Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.548 sec Results : Tests run: 2, Failures: 0, Errors: 0, Skipped: 0 [HUDSON] Recording test results [INFO] [bundle:bundle] [WARNING] Warning building bundle org.cytoscape:sbml-impl:bundle:1.0-SNAPSHOT : Instructions for Export-Package that are never used: org\.cytoscape\.sbml\..*|org\.cytoscape\.sbml [WARNING] Warning building bundle org.cytoscape:sbml-impl:bundle:1.0-SNAPSHOT : Superfluous export-package instructions: [org.cytoscape.sbml.*] [INFO] [javadoc:jar {execution: attach-javadocs}] [ERROR] Error fetching link: http://cytoscape.wodaklab.org/javadoc/package-list. Ignored it. Loading source files for package org.cytoscape.sbml.internal... Constructing Javadoc information... Standard Doclet version 1.6.0_20 Building tree for all the packages and classes... Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/ws/trunk/target/apidocs/org/cytoscape/sbml/internal//SBMLFileFilter.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/ws/trunk/target/apidocs/org/cytoscape/sbml/internal//SBMLNetworkViewReader.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/ws/trunk/target/apidocs/org/cytoscape/sbml/internal//SBMLNetworkViewTaskFactory.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/ws/trunk/target/apidocs/org/cytoscape/sbml/internal//package-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/ws/trunk/target/apidocs/org/cytoscape/sbml/internal//package-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/ws/trunk/target/apidocs/org/cytoscape/sbml/internal//package-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/ws/trunk/target/apidocs/constant-values.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/ws/trunk/target/apidocs/org/cytoscape/sbml/internal//class-use/SBMLNetworkViewReader.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/ws/trunk/target/apidocs/org/cytoscape/sbml/internal//class-use/SBMLNetworkViewTaskFactory.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/ws/trunk/target/apidocs/org/cytoscape/sbml/internal//class-use/SBMLFileFilter.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/ws/trunk/target/apidocs/org/cytoscape/sbml/internal//package-use.html...> Building index for all the packages and classes... Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/ws/trunk/target/apidocs/overview-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/ws/trunk/target/apidocs/index-all.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/ws/trunk/target/apidocs/deprecated-list.html...> Building index for all classes... Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/ws/trunk/target/apidocs/allclasses-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/ws/trunk/target/apidocs/allclasses-noframe.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/ws/trunk/target/apidocs/index.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/ws/trunk/target/apidocs/help-doc.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/ws/trunk/target/apidocs/stylesheet.css...> [INFO] Building jar: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/ws/trunk/target/sbml-impl-1.0-SNAPSHOT-javadoc.jar> [INFO] Preparing source:jar [WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation. [INFO] No goals needed for project - skipping [INFO] [source:jar {execution: attach-sources}] [INFO] Building jar: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/ws/trunk/target/sbml-impl-1.0-SNAPSHOT-sources.jar> [INFO] [install:install] [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/ws/trunk/target/sbml-impl-1.0-SNAPSHOT.jar> to /home/bturner/.m2/repository/org/cytoscape/sbml-impl/1.0-SNAPSHOT/sbml-impl-1.0-SNAPSHOT.jar [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/ws/trunk/target/sbml-impl-1.0-SNAPSHOT-javadoc.jar> to /home/bturner/.m2/repository/org/cytoscape/sbml-impl/1.0-SNAPSHOT/sbml-impl-1.0-SNAPSHOT-javadoc.jar [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/ws/trunk/target/sbml-impl-1.0-SNAPSHOT-sources.jar> to /home/bturner/.m2/repository/org/cytoscape/sbml-impl/1.0-SNAPSHOT/sbml-impl-1.0-SNAPSHOT-sources.jar [INFO] [bundle:install] [INFO] Parsing file:/home/bturner/.m2/repository/repository.xml [INFO] Installing org/cytoscape/sbml-impl/1.0-SNAPSHOT/sbml-impl-1.0-SNAPSHOT.jar [INFO] Writing OBR metadata [INFO] [deploy:deploy] [INFO] Retrieving previous build number from snapshots Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/sbml-impl/1.0-SNAPSHOT/sbml-impl-1.0-20101114.013305-24.jar 9K uploaded (sbml-impl-1.0-20101114.013305-24.jar) [INFO] Retrieving previous metadata from snapshots [INFO] Uploading repository metadata for: 'artifact org.cytoscape:sbml-impl' [INFO] Uploading project information for sbml-impl 1.0-20101114.013305-24 [INFO] Retrieving previous metadata from snapshots [INFO] Uploading repository metadata for: 'snapshot org.cytoscape:sbml-impl:1.0-SNAPSHOT' [INFO] Retrieving previous build number from snapshots Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/sbml-impl/1.0-SNAPSHOT/sbml-impl-1.0-20101114.013305-24-javadoc.jar 30K uploaded (sbml-impl-1.0-20101114.013305-24-javadoc.jar) [INFO] Retrieving previous build number from snapshots Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/sbml-impl/1.0-SNAPSHOT/sbml-impl-1.0-20101114.013305-24-sources.jar 4K uploaded (sbml-impl-1.0-20101114.013305-24-sources.jar) [INFO] [bundle:deploy] [INFO] Remote OBR update disabled (enable with -DremoteOBR) [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 SBML Impl/modules/org.cytoscape$sbml-impl/builds/2010-11-13_20-32-21/archive/org.cytoscape/sbml-impl/1.0-SNAPSHOT/pom.xml [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/ws/trunk/target/sbml-impl-1.0-SNAPSHOT.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 SBML Impl/modules/org.cytoscape$sbml-impl/builds/2010-11-13_20-32-21/archive/org.cytoscape/sbml-impl/1.0-20101114.013305-24/sbml-impl-1.0-SNAPSHOT.jar [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/ws/trunk/target/sbml-impl-1.0-SNAPSHOT-javadoc.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 SBML Impl/modules/org.cytoscape$sbml-impl/builds/2010-11-13_20-32-21/archive/org.cytoscape/sbml-impl/1.0-20101114.013305-24/sbml-impl-1.0-SNAPSHOT-javadoc.jar [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/ws/trunk/target/sbml-impl-1.0-SNAPSHOT-sources.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 SBML Impl/modules/org.cytoscape$sbml-impl/builds/2010-11-13_20-32-21/archive/org.cytoscape/sbml-impl/1.0-20101114.013305-24/sbml-impl-1.0-SNAPSHOT-sources.jar [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESSFUL [INFO] ------------------------------------------------------------------------ [INFO] Total time: 44 seconds [INFO] Finished at: Sat Nov 13 20:33:07 EST 2010 [INFO] Final Memory: 71M/725M [INFO] ------------------------------------------------------------------------ Waiting for Hudson to finish collecting data Sending e-mails to: [email protected] channel stopped [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.sbml-impl [org.cytoscape.sbml] [INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar] [INFO] Sonar host: http://localhost:8021/sonar [INFO] Sonar version: 2.2 [INFO] [sonar-core:internal] [INFO] Database dialect class org.sonar.api.database.dialect.MySql [INFO] ------------- Analyzing org.cytoscape.sbml-impl [org.cytoscape.sbml] [INFO] Selected quality profile : Cytoscape, language=java [INFO] Configure maven plugins... [INFO] Sensor JavaSourceImporter... [INFO] Sensor JavaSourceImporter done: 273 ms [INFO] Sensor AsynchronousMeasuresSensor... [INFO] Sensor AsynchronousMeasuresSensor done: 69 ms [INFO] Sensor SquidSensor... [INFO] Java AST scan... [INFO] Java AST scan done: 317 ms [INFO] Java bytecode scan... [INFO] Java bytecode scan done: 116 ms [INFO] Squid extraction... [INFO] Package design analysis... [INFO] Package design analysis done: 6 ms [INFO] Squid extraction done: 127 ms [INFO] Sensor SquidSensor done: 602 ms [INFO] Sensor ProfileSensor... [INFO] Sensor ProfileSensor done: 25 ms [INFO] Sensor ProjectLinksSensor... [INFO] Sensor ProjectLinksSensor done: 6 ms [INFO] Sensor VersionEventsSensor... [INFO] Sensor VersionEventsSensor done: 44 ms [INFO] Sensor Maven dependencies... [INFO] Sensor Maven dependencies done: 207 ms [INFO] Execute maven plugin findbugs-maven-plugin... [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.sbml-impl [org.cytoscape.sbml] [INFO] task-segment: [org.codehaus.mojo:findbugs-maven-plugin:2.3.1:findbugs] [INFO] ------------------------------------------------------------------------ [INFO] Preparing findbugs:findbugs [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Can not execute Sonar Embedded error: Unable to execute maven plugin The plugin 'org.codehaus.mojo:cobertura-maven-plugin' does not exist or no valid version could be found [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 8 seconds [INFO] Finished at: Sat Nov 13 20:33:27 EST 2010 [INFO] Final Memory: 49M/597M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/cytoscape-cvs?hl=en.
