See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/14/>
------------------------------------------ [...truncated 137 lines...] Standard Doclet version 1.6.0_20 Building tree for all the packages and classes... Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/dist//HDistCenter.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/dist//HDistLeft.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/dist//HDistRight.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/dist//VDistBottom.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/dist//VDistCenter.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/dist//VDistTop.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/stack//HStackBottom.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/stack//HStackCenter.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/stack//HStackTop.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/stack//VStackCenter.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/stack//VStackLeft.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/stack//VStackRight.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/align//HAlignCenter.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/align//HAlignLeft.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/align//HAlignRight.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/align//VAlignBottom.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/align//VAlignCenter.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/align//VAlignTop.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions//AbstractControlAction.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions//AbstractControlAction.XComparator.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions//AbstractControlAction.YComparator.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/view//AlignPanel.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/view//DistPanel.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/view//StackPanel.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control//ControlPanel.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control//ControlPanelAction.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/scale//ScaleLayouter.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/scale//ScaleLayouter.Direction.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/scale//ScalePanel.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/scale//ScalePanelAction.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/common//AbstractManualLayoutAction.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/common//AbstractManualPanel.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/common//CheckBoxTracker.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/common//GraphConverter2.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/common//PolymorphicSlider.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/common//SliderStateTracker.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/layout/algorithm//MutablePolyEdgeGraphLayout.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/rotate//RotatePanel.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/rotate//RotatePanelAction.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/rotate//RotationLayouter.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/overview-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/common//package-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/common//package-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/common//package-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control//package-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control//package-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control//package-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions//package-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions//package-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions//package-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/align//package-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/align//package-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/align//package-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/dist//package-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/dist//package-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/dist//package-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/stack//package-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/stack//package-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/stack//package-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/view//package-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/view//package-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/view//package-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/layout/algorithm//package-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/layout/algorithm//package-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/layout/algorithm//package-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/rotate//package-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/rotate//package-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/rotate//package-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/scale//package-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/scale//package-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/scale//package-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/constant-values.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/serialized-form.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/dist//class-use/HDistRight.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/dist//class-use/VDistCenter.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/dist//class-use/VDistTop.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/dist//class-use/HDistLeft.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/dist//class-use/VDistBottom.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/dist//class-use/HDistCenter.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/stack//class-use/HStackCenter.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/stack//class-use/HStackTop.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/stack//class-use/VStackLeft.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/stack//class-use/VStackRight.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/stack//class-use/HStackBottom.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/stack//class-use/VStackCenter.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/align//class-use/HAlignCenter.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/align//class-use/VAlignCenter.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/align//class-use/HAlignRight.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/align//class-use/VAlignBottom.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/align//class-use/HAlignLeft.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/align//class-use/VAlignTop.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions//class-use/AbstractControlAction.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions//class-use/AbstractControlAction.XComparator.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions//class-use/AbstractControlAction.YComparator.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/view//class-use/StackPanel.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/view//class-use/AlignPanel.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/view//class-use/DistPanel.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control//class-use/ControlPanel.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control//class-use/ControlPanelAction.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/scale//class-use/ScalePanelAction.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/scale//class-use/ScalePanel.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/scale//class-use/ScaleLayouter.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/scale//class-use/ScaleLayouter.Direction.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/common//class-use/GraphConverter2.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/common//class-use/PolymorphicSlider.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/common//class-use/SliderStateTracker.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/common//class-use/AbstractManualLayoutAction.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/common//class-use/AbstractManualPanel.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/common//class-use/CheckBoxTracker.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/layout/algorithm//class-use/MutablePolyEdgeGraphLayout.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/rotate//class-use/RotatePanelAction.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/rotate//class-use/RotatePanel.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/rotate//class-use/RotationLayouter.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/common//package-use.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control//package-use.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions//package-use.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/align//package-use.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/dist//package-use.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/stack//package-use.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/view//package-use.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/layout/algorithm//package-use.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/rotate//package-use.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/scale//package-use.html...> Building index for all the packages and classes... Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/overview-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/index-all.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/deprecated-list.html...> Building index for all classes... Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/allclasses-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/allclasses-noframe.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/index.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/overview-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/help-doc.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/stylesheet.css...> 9 warnings [WARNING] Javadoc Warnings [WARNING] javadoc: warning - Error fetching URL: http://java.sun.com/javase/6/docs/api/package-list [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/src/main/java/org/cytoscape/view/manual/internal/common/AbstractManualLayoutAction.java>:81: warning - @param argument "title" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/src/main/java/org/cytoscape/view/manual/internal/common/AbstractManualLayoutAction.java>:137: warning - @param argument "ev" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/src/main/java/org/cytoscape/view/manual/internal/common/AbstractManualLayoutAction.java>:166: warning - @param argument "componentIndex" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/src/main/java/org/cytoscape/view/manual/internal/layout/algorithm/MutablePolyEdgeGraphLayout.java>:69: warning - Tag @see: can't find getNodePosition(int, boolean) in org.cytoscape.view.manual.internal.layout.algorithm.MutablePolyEdgeGraphLayout [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/src/main/java/org/cytoscape/view/manual/internal/layout/algorithm/MutablePolyEdgeGraphLayout.java>:60: warning - Tag @see: can't find getNodePosition(int, boolean) in org.cytoscape.view.manual.internal.layout.algorithm.MutablePolyEdgeGraphLayout [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/src/main/java/org/cytoscape/view/manual/internal/layout/algorithm/MutablePolyEdgeGraphLayout.java>:92: warning - Tag @see: can't find setNodePosition(int, double, double) in org.cytoscape.view.manual.internal.layout.algorithm.MutablePolyEdgeGraphLayout [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/src/main/java/org/cytoscape/view/manual/internal/layout/algorithm/MutablePolyEdgeGraphLayout.java>:130: warning - Tag @see: can't find getNodePosition(int, boolean) in org.cytoscape.view.manual.internal.layout.algorithm.MutablePolyEdgeGraphLayout [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/src/main/java/org/cytoscape/view/manual/internal/layout/algorithm/MutablePolyEdgeGraphLayout.java>:130: warning - Tag @see: can't find isMovableNode(int) in org.cytoscape.view.manual.internal.layout.algorithm.MutablePolyEdgeGraphLayout [INFO] Building jar: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/manual-layout-impl-1.0-SNAPSHOT-javadoc.jar> [INFO] Preparing source:jar [WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation. [INFO] No goals needed for project - skipping [INFO] [source:jar {execution: attach-sources}] [INFO] Building jar: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/manual-layout-impl-1.0-SNAPSHOT-sources.jar> [INFO] [install:install] [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/manual-layout-impl-1.0-SNAPSHOT.jar> to /home/bturner/.m2/repository/org/cytoscape/manual-layout-impl/1.0-SNAPSHOT/manual-layout-impl-1.0-SNAPSHOT.jar [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/manual-layout-impl-1.0-SNAPSHOT-javadoc.jar> to /home/bturner/.m2/repository/org/cytoscape/manual-layout-impl/1.0-SNAPSHOT/manual-layout-impl-1.0-SNAPSHOT-javadoc.jar [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/manual-layout-impl-1.0-SNAPSHOT-sources.jar> to /home/bturner/.m2/repository/org/cytoscape/manual-layout-impl/1.0-SNAPSHOT/manual-layout-impl-1.0-SNAPSHOT-sources.jar [INFO] [bundle:install] [INFO] Parsing file:/home/bturner/.m2/repository/repository.xml [INFO] Installing org/cytoscape/manual-layout-impl/1.0-SNAPSHOT/manual-layout-impl-1.0-SNAPSHOT.jar [INFO] Writing OBR metadata [INFO] [deploy:deploy] [INFO] Retrieving previous build number from snapshots Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/manual-layout-impl/1.0-SNAPSHOT/manual-layout-impl-1.0-20101116.011349-5.jar 75K uploaded (manual-layout-impl-1.0-20101116.011349-5.jar) [INFO] Retrieving previous metadata from snapshots [INFO] Uploading repository metadata for: 'snapshot org.cytoscape:manual-layout-impl:1.0-SNAPSHOT' [INFO] Uploading project information for manual-layout-impl 1.0-20101116.011349-5 [INFO] Retrieving previous metadata from snapshots [INFO] Uploading repository metadata for: 'artifact org.cytoscape:manual-layout-impl' [INFO] Retrieving previous build number from snapshots Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/manual-layout-impl/1.0-SNAPSHOT/manual-layout-impl-1.0-20101116.011349-5-javadoc.jar 280K uploaded (manual-layout-impl-1.0-20101116.011349-5-javadoc.jar) [INFO] Retrieving previous build number from snapshots Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/manual-layout-impl/1.0-SNAPSHOT/manual-layout-impl-1.0-20101116.011349-5-sources.jar 77K uploaded (manual-layout-impl-1.0-20101116.011349-5-sources.jar) [INFO] [bundle:deploy] [INFO] Remote OBR update disabled (enable with -DremoteOBR) [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Manual Layout Impl/modules/org.cytoscape$manual-layout-impl/builds/2010-11-15_20-12-53/archive/org.cytoscape/manual-layout-impl/1.0-SNAPSHOT/pom.xml [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/manual-layout-impl-1.0-SNAPSHOT.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Manual Layout Impl/modules/org.cytoscape$manual-layout-impl/builds/2010-11-15_20-12-53/archive/org.cytoscape/manual-layout-impl/1.0-20101116.011349-5/manual-layout-impl-1.0-SNAPSHOT.jar [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/manual-layout-impl-1.0-SNAPSHOT-javadoc.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Manual Layout Impl/modules/org.cytoscape$manual-layout-impl/builds/2010-11-15_20-12-53/archive/org.cytoscape/manual-layout-impl/1.0-20101116.011349-5/manual-layout-impl-1.0-SNAPSHOT-javadoc.jar [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/manual-layout-impl-1.0-SNAPSHOT-sources.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Manual Layout Impl/modules/org.cytoscape$manual-layout-impl/builds/2010-11-15_20-12-53/archive/org.cytoscape/manual-layout-impl/1.0-20101116.011349-5/manual-layout-impl-1.0-SNAPSHOT-sources.jar [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESSFUL [INFO] ------------------------------------------------------------------------ [INFO] Total time: 55 seconds [INFO] Finished at: Mon Nov 15 20:13:50 EST 2010 [INFO] Final Memory: 63M/724M [INFO] ------------------------------------------------------------------------ Sending e-mails to: [email protected] channel stopped [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building Manual Layout [INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar] [INFO] Sonar host: http://localhost:8021/sonar [INFO] Sonar version: 2.2 [INFO] [sonar-core:internal] [INFO] Database dialect class org.sonar.api.database.dialect.MySql [INFO] ------------- Analyzing Manual Layout [INFO] Selected quality profile : Cytoscape, language=java [INFO] Configure maven plugins... [INFO] Sensor JavaSourceImporter... [INFO] Sensor JavaSourceImporter done: 537 ms [INFO] Sensor AsynchronousMeasuresSensor... [INFO] Sensor AsynchronousMeasuresSensor done: 28 ms [INFO] Sensor SquidSensor... [INFO] Java AST scan... [INFO] Java AST scan done: 650 ms [INFO] Java bytecode scan... [WARN] Class '[Lorg/cytoscape/view/manual/internal/scale/ScaleLayouter$Direction;' is not accessible through the ClassLoader. [INFO] Java bytecode scan done: 200 ms [INFO] Squid extraction... [INFO] Package design analysis... [INFO] Package design analysis done: 49 ms [INFO] Squid extraction done: 789 ms [INFO] Sensor SquidSensor done: 1759 ms [INFO] Sensor ProfileSensor... [INFO] Sensor ProfileSensor done: 25 ms [INFO] Sensor ProjectLinksSensor... [INFO] Sensor ProjectLinksSensor done: 5 ms [INFO] Sensor VersionEventsSensor... [INFO] Sensor VersionEventsSensor done: 53 ms [INFO] Sensor Maven dependencies... [INFO] Sensor Maven dependencies done: 155 ms [INFO] Execute maven plugin findbugs-maven-plugin... [INFO] ------------------------------------------------------------------------ [INFO] Building Manual Layout [INFO] task-segment: [org.codehaus.mojo:findbugs-maven-plugin:2.3.1:findbugs] [INFO] ------------------------------------------------------------------------ [INFO] Preparing findbugs:findbugs [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Can not execute Sonar Embedded error: Unable to execute maven plugin The plugin 'org.codehaus.mojo:cobertura-maven-plugin' does not exist or no valid version could be found [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 9 seconds [INFO] Finished at: Mon Nov 15 20:14:06 EST 2010 [INFO] Final Memory: 49M/486M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/cytoscape-cvs?hl=en.
