See
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/1687/>
------------------------------------------
[...truncated 640 lines...]
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.codehaus.classworlds.Launcher.launchEnhanced(Launcher.java:315)
at org.codehaus.classworlds.Launcher.launch(Launcher.java:255)
at hudson.maven.agent.Main.launch(Main.java:165)
at hudson.maven.MavenBuilder.call(MavenBuilder.java:165)
at
hudson.maven.MavenModuleSetBuild$Builder.call(MavenModuleSetBuild.java:750)
at
hudson.maven.MavenModuleSetBuild$Builder.call(MavenModuleSetBuild.java:694)
at hudson.remoting.UserRequest.perform(UserRequest.java:114)
at hudson.remoting.UserRequest.perform(UserRequest.java:48)
at hudson.remoting.Request$2.run(Request.java:270)
at
java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
at java.util.concurrent.FutureTask.run(FutureTask.java:138)
at
java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
at java.lang.Thread.run(Thread.java:619)
Caused by: org.xmlpull.v1.XmlPullParserException: unexpected type
(position:END_DOCUMENT n...@3:1 in java.io.inputstreamrea...@7b4286da)
at org.kxml2.io.KXmlParser.exception(Unknown Source)
at org.kxml2.io.KXmlParser.nextTag(Unknown Source)
at
org.apache.felix.bundlerepository.impl.PullParser.parseRepository(PullParser.java:43)
at
org.apache.felix.bundlerepository.impl.DataModelHelperImpl.repository(DataModelHelperImpl.java:147)
at
org.apache.felix.bundlerepository.impl.DataModelHelperImpl.repository(DataModelHelperImpl.java:118)
at
org.apache.felix.obrplugin.ObrUpdate.parseRepositoryXml(ObrUpdate.java:291)
... 32 more
[INFO] [deploy:deploy]
[INFO] Retrieving previous build number from snapshots
[INFO] repository metadata for: 'snapshot
org.cytoscape:core-task-impl:1.0-SNAPSHOT' could not be found on repository:
snapshots, so will be created
Uploading:
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/core-task-impl/1.0-SNAPSHOT/core-task-impl-1.0-20101122.010334-1.jar
[HUDSON] Archiving
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/pom.xml>
to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Core Task
Implementation/modules/org.cytoscape$core-task-impl/builds/2010-11-21_20-02-46/archive/org.cytoscape/core-task-impl/1.0-SNAPSHOT/pom.xml
[HUDSON] Archiving
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/target/core-task-impl-1.0-SNAPSHOT.jar>
to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Core Task
Implementation/modules/org.cytoscape$core-task-impl/builds/2010-11-21_20-02-46/archive/org.cytoscape/core-task-impl/1.0-20101122.010334-1/core-task-impl-1.0-SNAPSHOT.jar
[HUDSON] Archiving
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/target/core-task-impl-1.0-SNAPSHOT-javadoc.jar>
to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Core Task
Implementation/modules/org.cytoscape$core-task-impl/builds/2010-11-21_20-02-46/archive/org.cytoscape/core-task-impl/1.0-20101122.010334-1/core-task-impl-1.0-SNAPSHOT-javadoc.jar
[HUDSON] Archiving
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/target/core-task-impl-1.0-SNAPSHOT-sources.jar>
to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Core Task
Implementation/modules/org.cytoscape$core-task-impl/builds/2010-11-21_20-02-46/archive/org.cytoscape/core-task-impl/1.0-20101122.010334-1/core-task-impl-1.0-SNAPSHOT-sources.jar
[INFO] ------------------------------------------------------------------------
[ERROR] BUILD ERROR
[INFO] ------------------------------------------------------------------------
[INFO] Error deploying artifact: Failed to transfer file:
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/core-task-impl/1.0-SNAPSHOT/core-task-impl-1.0-20101122.010334-1.jar.
Return code is: 500
[INFO] ------------------------------------------------------------------------
[INFO] For more information, run Maven with the -e switch
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 46 seconds
[INFO] Finished at: Sun Nov 21 20:03:35 EST 2010
[INFO] Final Memory: 68M/725M
[INFO] ------------------------------------------------------------------------
Sending e-mails to: [email protected]
channel stopped
[trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn
org.codehaus.sonar:sonar-maven-plugin:1.8:sonar
-Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar
-Dsonar.jdbc.password=deploysonar
-Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar
-Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true
[INFO] Scanning for projects...
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/parent/1.0-SNAPSHOT/parent-1.0-SNAPSHOT.pom
[INFO] Unable to find resource 'org.cytoscape:parent:pom:1.0-SNAPSHOT' in
repository cytoscape_snapshots
(http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/)
WAGON_VERSION: 1.0-beta-2
[INFO] ------------------------------------------------------------------------
[INFO] Building org.cytoscape.core-task-impl
[INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar]
(aggregator-style)
[INFO] ------------------------------------------------------------------------
[INFO] [sonar:sonar]
[INFO] Sonar host: http://localhost:8021/sonar
[INFO] Sonar version: 2.4
[INFO] [sonar-core:internal]
[INFO] Database dialect class org.sonar.jpa.dialect.MySql
[INFO] ------------- Analyzing org.cytoscape.core-task-impl
[INFO] Selected quality profile : [name=Cytoscape,language=java]
[INFO] Configure maven plugins...
[INFO] Sensor JavaSourceImporter...
[INFO] Sensor JavaSourceImporter done: 710 ms
[INFO] Sensor AsynchronousMeasuresSensor...
[INFO] Sensor AsynchronousMeasuresSensor done: 27 ms
[INFO] Sensor SquidSensor...
[INFO] Java AST scan...
[INFO] Java AST scan done: 574 ms
[INFO] Java bytecode scan...
[INFO] Java bytecode scan done: 155 ms
[INFO] Squid extraction...
[INFO] Package design analysis...
[INFO] Package design analysis done: 12 ms
[INFO] Squid extraction done: 1608 ms
[INFO] Sensor SquidSensor done: 2478 ms
[INFO] Sensor FindbugsSensor...
[INFO] Execute Findbugs 1.3.9...
[INFO] Findbugs output report:
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/target/sonar/findbugs-result.xml>
[INFO] Execute Findbugs 1.3.9 done: 7480 ms
[INFO] Sensor FindbugsSensor done: 7637 ms
[INFO] Execute maven plugin cobertura-maven-plugin...
[INFO] ------------------------------------------------------------------------
[INFO] Building org.cytoscape.core-task-impl
[INFO] task-segment: [org.codehaus.mojo:cobertura-maven-plugin::cobertura]
[INFO] ------------------------------------------------------------------------
[INFO] Preparing cobertura:cobertura
[INFO] [resources:resources]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 2 resources
[INFO] Copying 0 resource
[INFO] [pax:compile]
[INFO] Nothing to compile - all classes are up to date
[INFO] [cobertura:instrument]
[INFO] Cobertura 1.9.4.1 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file
Instrumenting 105 files to
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/target/generated-classes/cobertura>
Cobertura: Saved information on 105 classes.
Instrument time: 3803ms
[INFO] Instrumentation was successful.
[INFO] [resources:testResources]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 3 resources
[INFO] [pax:testCompile]
[INFO] Nothing to compile - all classes are up to date
[INFO] [surefire:test]
[INFO] Surefire report directory:
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/target/surefire-reports>
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Running org.cytoscape.task.internal.session.SaveSessionAsTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.179 sec
Running org.cytoscape.task.internal.zoom.ZoomOutTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.734 sec
Running org.cytoscape.task.internal.zoom.FitSelectedTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.341 sec
Running org.cytoscape.task.internal.zoom.ZoomOutTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.11 sec
Running org.cytoscape.task.internal.select.AllFactoryTest
Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.217 sec
Running org.cytoscape.task.internal.zoom.ZoomInTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.083 sec
Running org.cytoscape.task.internal.setcurren.SetCurrentNetworkTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.091 sec
Running org.cytoscape.task.internal.select.InvertSelectedNodesTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.108 sec
Running org.cytoscape.task.internal.proxysettings.ProxySettingsTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.083 sec
Running org.cytoscape.task.internal.select.SelectAdjacentEdgesTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.1 sec
Running org.cytoscape.task.internal.select.DeselectAllEdgesTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.1 sec
Running org.cytoscape.task.internal.session.NewSessionTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.092 sec
Running org.cytoscape.task.internal.select.SelectAllTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.092 sec
Running org.cytoscape.task.internal.hide.HideSelectedNodesTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.092 sec
Running org.cytoscape.task.internal.select.DeselectAllTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.1 sec
Running org.cytoscape.task.internal.zoom.FitSelectedTaskTest
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.1 sec
Running org.cytoscape.task.internal.session.SaveSessionTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.1 sec
Running org.cytoscape.task.internal.title.EditNetworkTitleTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.101 sec
Running org.cytoscape.task.internal.select.SelectConnectedNodesTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.108 sec
Running
org.cytoscape.task.internal.loaddatatable.LoadDataTableTaskFactoryImplTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.107 sec
Running org.cytoscape.task.internal.select.InvertSelectedEdgesTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.093 sec
Running org.cytoscape.task.internal.loadnetwork.LoadNetworkURLTaskTest
Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 5.117 sec
Running org.cytoscape.task.internal.session.NewSessionTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.098 sec
Running org.cytoscape.task.internal.zoom.FitContentTaskTest
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.1 sec
Running org.cytoscape.task.internal.select.SelectFromFileListTaskTest
Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.102 sec
Running org.cytoscape.task.internal.select.SelectFirstNeighborsNodeViewTaskTest
Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.083 sec
Running org.cytoscape.task.internal.hide.HideSelectedEdgesTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.084 sec
Running org.cytoscape.task.internal.zoom.FitContentTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.081 sec
Running org.cytoscape.task.internal.select.SelectFirstNeighborsTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.086 sec
Running
org.cytoscape.task.internal.setcurren.SetCurrentNetworkTaskFactoryImplTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.083 sec
Running org.cytoscape.task.internal.zoom.ZoomInTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.081 sec
Running org.cytoscape.task.internal.hide.UnHideAllNodesTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.086 sec
Running org.cytoscape.task.internal.select.DeselectAllNodesTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.083 sec
Running org.cytoscape.task.internal.select.SelectAllEdgesTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.091 sec
Running org.cytoscape.task.internal.loadnetwork.LoadNetworkFileTaskTest
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.147 sec
Running org.cytoscape.task.internal.title.EditNetworkTitleTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.086 sec
Running org.cytoscape.task.internal.hide.UnHideAllTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.101 sec
Running org.cytoscape.task.internal.session.OpenSessionTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.115 sec
Running org.cytoscape.task.internal.select.SelectAllNodesTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.11 sec
Running org.cytoscape.task.internal.hide.HideSelectedTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.109 sec
Running org.cytoscape.task.internal.hide.UnHideAllEdgesTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.1 sec
Results :
Tests run: 63, Failures: 0, Errors: 0, Skipped: 0
[INFO] [cobertura:cobertura]
[INFO] Cobertura 1.9.4.1 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file
Cobertura: Loaded information on 105 classes.
Report time: 594ms
[INFO] Cobertura Report generation was successful.
[INFO] Execute maven plugin cobertura-maven-plugin done: 22028 ms
[INFO] Sensor CoberturaSensor...
[INFO] parsing
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/target/site/cobertura/coverage.xml>
[INFO] Sensor CoberturaSensor done: 385 ms
[INFO] Sensor CpdSensor...
[INFO] Sensor CpdSensor done: 251 ms
[INFO] Sensor CheckstyleSensor...
[INFO] Execute Checkstyle 5.1...
[INFO] Checkstyle configuration:
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/target/sonar/checkstyle.xml>
[INFO] Execute Checkstyle 5.1 done: 1180 ms
[INFO] Sensor CheckstyleSensor done: 1210 ms
[INFO] Sensor PmdSensor...
[INFO] Execute PMD 4.2.5...
[INFO] Java version: 1.6
[INFO] PMD configuration:
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/target/sonar/pmd.xml>
[INFO] PMD output report:
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/target/sonar/pmd-result.xml>
[INFO] Execute PMD 4.2.5 done: 3877 ms
[INFO] Sensor PmdSensor done: 3968 ms
[INFO] Sensor ProfileSensor...
[INFO] Sensor ProfileSensor done: 25 ms
[INFO] Sensor ProjectLinksSensor...
[INFO] Sensor ProjectLinksSensor done: 5 ms
[INFO] Sensor VersionEventsSensor...
[INFO] Sensor VersionEventsSensor done: 37 ms
[INFO] Sensor Maven dependencies...
[INFO] Sensor Maven dependencies done: 124 ms
[INFO] Sensor SurefireSensor...
[INFO] parsing
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/target/surefire-reports>
[INFO] Sensor SurefireSensor done: 141 ms
[INFO] Execute decorators...
[INFO] ANALYSIS SUCCESSFUL, you can browse http://localhost:8021/sonar
[INFO] Database optimization...
[INFO] Deleting files data before Sun Nov 21 08:04:36 EST 2010
[INFO] Deleting unprocessed data before Sun Nov 21 08:04:37 EST 2010
[INFO] Database optimization done: 813 ms
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESSFUL
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 50 seconds
[INFO] Finished at: Sun Nov 21 20:04:37 EST 2010
[INFO] Final Memory: 72M/709M
[INFO] ------------------------------------------------------------------------
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