See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/29/>
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<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/common//AbstractManualPanel.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/common//CheckBoxTracker.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/common//GraphConverter2.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/common//PolymorphicSlider.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/common//SliderStateTracker.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/layout/algorithm//MutablePolyEdgeGraphLayout.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/rotate//RotatePanel.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/rotate//RotatePanelAction.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/rotate//RotationLayouter.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/overview-frame.html...> Generating 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<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/align//package-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/align//package-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/dist//package-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/dist//package-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/dist//package-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/stack//package-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/stack//package-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/stack//package-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/view//package-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/view//package-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/view//package-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/layout/algorithm//package-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/layout/algorithm//package-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/layout/algorithm//package-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/rotate//package-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/rotate//package-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/rotate//package-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/scale//package-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/scale//package-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/scale//package-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/constant-values.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/serialized-form.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/dist//class-use/HDistRight.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/dist//class-use/VDistCenter.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/dist//class-use/VDistTop.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/dist//class-use/HDistLeft.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/dist//class-use/VDistBottom.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/dist//class-use/HDistCenter.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/stack//class-use/HStackCenter.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/stack//class-use/HStackTop.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/stack//class-use/VStackLeft.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/stack//class-use/VStackRight.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/stack//class-use/HStackBottom.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/stack//class-use/VStackCenter.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/align//class-use/HAlignCenter.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/align//class-use/VAlignCenter.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/align//class-use/HAlignRight.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/align//class-use/VAlignBottom.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/align//class-use/HAlignLeft.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/align//class-use/VAlignTop.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions//class-use/AbstractControlAction.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions//class-use/AbstractControlAction.XComparator.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions//class-use/AbstractControlAction.YComparator.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/view//class-use/StackPanel.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/view//class-use/AlignPanel.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/view//class-use/DistPanel.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control//class-use/ControlPanel.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control//class-use/ControlPanelAction.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/scale//class-use/ScalePanelAction.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/scale//class-use/ScalePanel.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/scale//class-use/ScaleLayouter.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/scale//class-use/ScaleLayouter.Direction.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/common//class-use/GraphConverter2.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/common//class-use/PolymorphicSlider.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/common//class-use/SliderStateTracker.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/common//class-use/AbstractManualLayoutAction.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/common//class-use/AbstractManualPanel.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/common//class-use/CheckBoxTracker.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/layout/algorithm//class-use/MutablePolyEdgeGraphLayout.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/rotate//class-use/RotatePanelAction.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/rotate//class-use/RotatePanel.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/rotate//class-use/RotationLayouter.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/common//package-use.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control//package-use.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions//package-use.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/align//package-use.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/dist//package-use.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/actions/stack//package-use.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/control/view//package-use.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/layout/algorithm//package-use.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/rotate//package-use.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/org/cytoscape/view/manual/internal/scale//package-use.html...> Building index for all the packages and classes... Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/overview-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/index-all.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/deprecated-list.html...> Building index for all classes... Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/allclasses-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/allclasses-noframe.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/index.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/overview-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/help-doc.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/apidocs/stylesheet.css...> 8 warnings [WARNING] Javadoc Warnings [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/src/main/java/org/cytoscape/view/manual/internal/common/AbstractManualLayoutAction.java>:81: warning - @param argument "title" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/src/main/java/org/cytoscape/view/manual/internal/common/AbstractManualLayoutAction.java>:137: warning - @param argument "ev" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/src/main/java/org/cytoscape/view/manual/internal/common/AbstractManualLayoutAction.java>:166: warning - @param argument "componentIndex" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/src/main/java/org/cytoscape/view/manual/internal/layout/algorithm/MutablePolyEdgeGraphLayout.java>:69: warning - Tag @see: can't find getNodePosition(int, boolean) in org.cytoscape.view.manual.internal.layout.algorithm.MutablePolyEdgeGraphLayout [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/src/main/java/org/cytoscape/view/manual/internal/layout/algorithm/MutablePolyEdgeGraphLayout.java>:60: warning - Tag @see: can't find getNodePosition(int, boolean) in org.cytoscape.view.manual.internal.layout.algorithm.MutablePolyEdgeGraphLayout [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/src/main/java/org/cytoscape/view/manual/internal/layout/algorithm/MutablePolyEdgeGraphLayout.java>:92: warning - Tag @see: can't find setNodePosition(int, double, double) in org.cytoscape.view.manual.internal.layout.algorithm.MutablePolyEdgeGraphLayout [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/src/main/java/org/cytoscape/view/manual/internal/layout/algorithm/MutablePolyEdgeGraphLayout.java>:130: warning - Tag @see: can't find getNodePosition(int, boolean) in org.cytoscape.view.manual.internal.layout.algorithm.MutablePolyEdgeGraphLayout [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/src/main/java/org/cytoscape/view/manual/internal/layout/algorithm/MutablePolyEdgeGraphLayout.java>:130: warning - Tag @see: can't find isMovableNode(int) in org.cytoscape.view.manual.internal.layout.algorithm.MutablePolyEdgeGraphLayout [INFO] Building jar: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/manual-layout-impl-1.0-SNAPSHOT-javadoc.jar> [INFO] Preparing source:jar [WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation. [INFO] No goals needed for project - skipping [INFO] [source:jar {execution: attach-sources}] [INFO] Building jar: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/manual-layout-impl-1.0-SNAPSHOT-sources.jar> [INFO] [install:install] [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/manual-layout-impl-1.0-SNAPSHOT.jar> to /home/bturner/.m2/repository/org/cytoscape/manual-layout-impl/1.0-SNAPSHOT/manual-layout-impl-1.0-SNAPSHOT.jar [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/manual-layout-impl-1.0-SNAPSHOT-javadoc.jar> to /home/bturner/.m2/repository/org/cytoscape/manual-layout-impl/1.0-SNAPSHOT/manual-layout-impl-1.0-SNAPSHOT-javadoc.jar [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/manual-layout-impl-1.0-SNAPSHOT-sources.jar> to /home/bturner/.m2/repository/org/cytoscape/manual-layout-impl/1.0-SNAPSHOT/manual-layout-impl-1.0-SNAPSHOT-sources.jar [INFO] [bundle:install] [INFO] Parsing file:/home/bturner/.m2/repository/repository.xml [Fatal Error] repository.xml:3:1: Premature end of file. org.xml.sax.SAXParseException: Premature end of file. at com.sun.org.apache.xerces.internal.parsers.DOMParser.parse(DOMParser.java:249) at com.sun.org.apache.xerces.internal.jaxp.DocumentBuilderImpl.parse(DocumentBuilderImpl.java:284) at javax.xml.parsers.DocumentBuilder.parse(DocumentBuilder.java:208) at org.apache.felix.obrplugin.ObrUpdate.parseFile(ObrUpdate.java:347) at org.apache.felix.obrplugin.ObrUpdate.parseRepositoryXml(ObrUpdate.java:324) at org.apache.felix.obrplugin.ObrInstall.execute(ObrInstall.java:140) at org.apache.maven.plugin.DefaultPluginManager.executeMojo(DefaultPluginManager.java:483) at hudson.maven.agent.PluginManagerInterceptor.executeMojo(PluginManagerInterceptor.java:182) at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoals(DefaultLifecycleExecutor.java:678) at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoalWithLifecycle(DefaultLifecycleExecutor.java:540) at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoal(DefaultLifecycleExecutor.java:519) at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoalAndHandleFailures(DefaultLifecycleExecutor.java:371) at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeTaskSegments(DefaultLifecycleExecutor.java:332) at org.apache.maven.lifecycle.DefaultLifecycleExecutor.execute(DefaultLifecycleExecutor.java:181) at org.apache.maven.lifecycle.LifecycleExecutorInterceptor.execute(LifecycleExecutorInterceptor.java:65) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:356) at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:137) at org.apache.maven.cli.MavenCli.main(MavenCli.java:356) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.codehaus.classworlds.Launcher.launchEnhanced(Launcher.java:315) at org.codehaus.classworlds.Launcher.launch(Launcher.java:255) at hudson.maven.agent.Main.launch(Main.java:165) at hudson.maven.MavenBuilder.call(MavenBuilder.java:165) at hudson.maven.MavenModuleSetBuild$Builder.call(MavenModuleSetBuild.java:750) at hudson.maven.MavenModuleSetBuild$Builder.call(MavenModuleSetBuild.java:694) at hudson.remoting.UserRequest.perform(UserRequest.java:114) at hudson.remoting.UserRequest.perform(UserRequest.java:48) at hudson.remoting.Request$2.run(Request.java:270) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) at java.util.concurrent.FutureTask.run(FutureTask.java:138) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) at java.lang.Thread.run(Thread.java:619) [INFO] Writing OBR metadata [INFO] [deploy:deploy] [INFO] Retrieving previous build number from snapshots [INFO] repository metadata for: 'snapshot org.cytoscape:manual-layout-impl:1.0-SNAPSHOT' could not be found on repository: snapshots, so will be created Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/manual-layout-impl/1.0-SNAPSHOT/manual-layout-impl-1.0-20101122.011410-1.jar [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Manual Layout Impl/modules/org.cytoscape$manual-layout-impl/builds/2010-11-21_20-13-19/archive/org.cytoscape/manual-layout-impl/1.0-SNAPSHOT/pom.xml [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/manual-layout-impl-1.0-SNAPSHOT.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Manual Layout Impl/modules/org.cytoscape$manual-layout-impl/builds/2010-11-21_20-13-19/archive/org.cytoscape/manual-layout-impl/1.0-20101122.011410-1/manual-layout-impl-1.0-SNAPSHOT.jar [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/manual-layout-impl-1.0-SNAPSHOT-javadoc.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Manual Layout Impl/modules/org.cytoscape$manual-layout-impl/builds/2010-11-21_20-13-19/archive/org.cytoscape/manual-layout-impl/1.0-20101122.011410-1/manual-layout-impl-1.0-SNAPSHOT-javadoc.jar [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/manual-layout-impl-1.0-SNAPSHOT-sources.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Manual Layout Impl/modules/org.cytoscape$manual-layout-impl/builds/2010-11-21_20-13-19/archive/org.cytoscape/manual-layout-impl/1.0-20101122.011410-1/manual-layout-impl-1.0-SNAPSHOT-sources.jar [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Error deploying artifact: Failed to transfer file: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/manual-layout-impl/1.0-SNAPSHOT/manual-layout-impl-1.0-20101122.011410-1.jar. Return code is: 500 [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 49 seconds [INFO] Finished at: Sun Nov 21 20:14:11 EST 2010 [INFO] Final Memory: 62M/726M [INFO] ------------------------------------------------------------------------ Sending e-mails to: [email protected] channel stopped [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building Manual Layout [INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar] [INFO] Sonar host: http://localhost:8021/sonar [INFO] Sonar version: 2.4 Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/parent/3.0.0-alpha4-SNAPSHOT/parent-3.0.0-alpha4-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:parent:pom:3.0.0-alpha4-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/parent/3.0.0-alpha4-SNAPSHOT/parent-3.0.0-alpha4-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:parent:pom:3.0.0-alpha4-SNAPSHOT' in repository cytoscape_biopax_snapshot (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-snapshots//org/cytoscape/parent/3.0.0-alpha4-SNAPSHOT/parent-3.0.0-alpha4-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:parent:pom:3.0.0-alpha4-SNAPSHOT' in repository spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-snapshots/) [INFO] [sonar-core:internal] [INFO] Database dialect class org.sonar.jpa.dialect.MySql [INFO] ------------- Analyzing Manual Layout [INFO] Selected quality profile : [name=Cytoscape,language=java] [INFO] Configure maven plugins... [INFO] Sensor JavaSourceImporter... [INFO] Sensor JavaSourceImporter done: 676 ms [INFO] Sensor AsynchronousMeasuresSensor... [INFO] Sensor AsynchronousMeasuresSensor done: 75 ms [INFO] Sensor SquidSensor... [INFO] Java AST scan... [INFO] Java AST scan done: 524 ms [INFO] Java bytecode scan... [INFO] Java bytecode scan done: 145 ms [INFO] Squid extraction... [INFO] Package design analysis... [INFO] Package design analysis done: 37 ms [INFO] Squid extraction done: 641 ms [INFO] Sensor SquidSensor done: 1385 ms [INFO] Sensor FindbugsSensor... [INFO] Execute Findbugs 1.3.9... [INFO] Findbugs output report: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/target/sonar/findbugs-result.xml> An irrecoverable stack overflow has occurred. # # A fatal error has been detected by the Java Runtime Environment: # # SIGSEGV (0xb) at pc=0x00007f9f75fe4deb, pid=4922, tid=140320549299984 # # JRE version: 6.0_20-b02 # Java VM: Java HotSpot(TM) 64-Bit Server VM (16.3-b01 mixed mode linux-amd64 ) # Problematic frame: # C [libc.so.6+0x86deb] memcpy+0x15b # # An error report file with more information is saved as: # <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Manual%20Layout%20Impl/ws/trunk/hs_err_pid4922.log> # # If you would like to submit a bug report, please visit: # http://java.sun.com/webapps/bugreport/crash.jsp # The crash happened outside the Java Virtual Machine in native code. # See problematic frame for where to report the bug. # -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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