See <http://cytoscape.wodaklab.org/hudson/job/Util-Intr/598/>
------------------------------------------
[...truncated 80 lines...]
[WARNING] Warning building bundle org.cytoscape:util-intr:bundle:1.0-SNAPSHOT :
Instructions for Export-Package that are never used:
org\.cytoscape\.util\.intr\.internal\..*|org\.cytoscape\.util\.intr\.internal
[WARNING] Warning building bundle org.cytoscape:util-intr:bundle:1.0-SNAPSHOT :
Instructions for Private-Package that are never used:
org\.cytoscape\.util\.intr\.internal\..*|org\.cytoscape\.util\.intr\.internal
[INFO] [javadoc:jar {execution: attach-javadocs}]
[ERROR] Error fetching link:
http://cytoscape.wodaklab.org/javadoc/package-list. Ignored it.
Loading source files for package org.cytoscape.util.intr...
Constructing Javadoc information...
Standard Doclet version 1.6.0_20
Building tree for all the packages and classes...
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Building index for all the packages and classes...
Generating
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Building index for all classes...
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[INFO] Building jar:
<http://cytoscape.wodaklab.org/hudson/job/Util-Intr/ws/trunk/target/util-intr-1.0-SNAPSHOT-javadoc.jar>
[INFO] Preparing source:jar
[WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation.
[INFO] No goals needed for project - skipping
[INFO] [source:jar {execution: attach-sources}]
[INFO] Building jar:
<http://cytoscape.wodaklab.org/hudson/job/Util-Intr/ws/trunk/target/util-intr-1.0-SNAPSHOT-sources.jar>
[INFO] [install:install]
[INFO] Installing
<http://cytoscape.wodaklab.org/hudson/job/Util-Intr/ws/trunk/target/util-intr-1.0-SNAPSHOT.jar>
to
/home/bturner/.m2/repository/org/cytoscape/util-intr/1.0-SNAPSHOT/util-intr-1.0-SNAPSHOT.jar
[INFO] Installing
<http://cytoscape.wodaklab.org/hudson/job/Util-Intr/ws/trunk/target/util-intr-1.0-SNAPSHOT-javadoc.jar>
to
/home/bturner/.m2/repository/org/cytoscape/util-intr/1.0-SNAPSHOT/util-intr-1.0-SNAPSHOT-javadoc.jar
[INFO] Installing
<http://cytoscape.wodaklab.org/hudson/job/Util-Intr/ws/trunk/target/util-intr-1.0-SNAPSHOT-sources.jar>
to
/home/bturner/.m2/repository/org/cytoscape/util-intr/1.0-SNAPSHOT/util-intr-1.0-SNAPSHOT-sources.jar
[INFO] [bundle:install]
[INFO] Parsing file:/home/bturner/.m2/repository/repository.xml
[Fatal Error] repository.xml:3:1: Premature end of file.
org.xml.sax.SAXParseException: Premature end of file.
at
com.sun.org.apache.xerces.internal.parsers.DOMParser.parse(DOMParser.java:249)
at
com.sun.org.apache.xerces.internal.jaxp.DocumentBuilderImpl.parse(DocumentBuilderImpl.java:284)
at javax.xml.parsers.DocumentBuilder.parse(DocumentBuilder.java:208)
at org.apache.felix.obrplugin.ObrUpdate.parseFile(ObrUpdate.java:347)
at
org.apache.felix.obrplugin.ObrUpdate.parseRepositoryXml(ObrUpdate.java:324)
at org.apache.felix.obrplugin.ObrInstall.execute(ObrInstall.java:140)
at
org.apache.maven.plugin.DefaultPluginManager.executeMojo(DefaultPluginManager.java:483)
at
hudson.maven.agent.PluginManagerInterceptor.executeMojo(PluginManagerInterceptor.java:182)
at
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoals(DefaultLifecycleExecutor.java:678)
at
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoalWithLifecycle(DefaultLifecycleExecutor.java:540)
at
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoal(DefaultLifecycleExecutor.java:519)
at
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoalAndHandleFailures(DefaultLifecycleExecutor.java:371)
at
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeTaskSegments(DefaultLifecycleExecutor.java:332)
at
org.apache.maven.lifecycle.DefaultLifecycleExecutor.execute(DefaultLifecycleExecutor.java:181)
at
org.apache.maven.lifecycle.LifecycleExecutorInterceptor.execute(LifecycleExecutorInterceptor.java:65)
at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:356)
at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:137)
at org.apache.maven.cli.MavenCli.main(MavenCli.java:356)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.codehaus.classworlds.Launcher.launchEnhanced(Launcher.java:315)
at org.codehaus.classworlds.Launcher.launch(Launcher.java:255)
at hudson.maven.agent.Main.launch(Main.java:165)
at hudson.maven.MavenBuilder.call(MavenBuilder.java:165)
at
hudson.maven.MavenModuleSetBuild$Builder.call(MavenModuleSetBuild.java:750)
at
hudson.maven.MavenModuleSetBuild$Builder.call(MavenModuleSetBuild.java:694)
at hudson.remoting.UserRequest.perform(UserRequest.java:114)
at hudson.remoting.UserRequest.perform(UserRequest.java:48)
at hudson.remoting.Request$2.run(Request.java:270)
at
java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
at java.util.concurrent.FutureTask.run(FutureTask.java:138)
at
java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
at java.lang.Thread.run(Thread.java:619)
[INFO] Writing OBR metadata
[INFO] [deploy:deploy]
[INFO] Retrieving previous build number from snapshots
[INFO] repository metadata for: 'snapshot org.cytoscape:util-intr:1.0-SNAPSHOT'
could not be found on repository: snapshots, so will be created
Uploading:
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/util-intr/1.0-SNAPSHOT/util-intr-1.0-20101122.015137-1.jar
[HUDSON] Archiving
<http://cytoscape.wodaklab.org/hudson/job/Util-Intr/ws/trunk/pom.xml> to
/R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Util-Intr/modules/org.cytoscape$util-intr/builds/2010-11-21_20-51-04/archive/org.cytoscape/util-intr/1.0-SNAPSHOT/pom.xml
[HUDSON] Archiving
<http://cytoscape.wodaklab.org/hudson/job/Util-Intr/ws/trunk/target/util-intr-1.0-SNAPSHOT.jar>
to
/R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Util-Intr/modules/org.cytoscape$util-intr/builds/2010-11-21_20-51-04/archive/org.cytoscape/util-intr/1.0-20101122.015137-1/util-intr-1.0-SNAPSHOT.jar
[HUDSON] Archiving
<http://cytoscape.wodaklab.org/hudson/job/Util-Intr/ws/trunk/target/util-intr-1.0-SNAPSHOT-javadoc.jar>
to
/R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Util-Intr/modules/org.cytoscape$util-intr/builds/2010-11-21_20-51-04/archive/org.cytoscape/util-intr/1.0-20101122.015137-1/util-intr-1.0-SNAPSHOT-javadoc.jar
[HUDSON] Archiving
<http://cytoscape.wodaklab.org/hudson/job/Util-Intr/ws/trunk/target/util-intr-1.0-SNAPSHOT-sources.jar>
to
/R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Util-Intr/modules/org.cytoscape$util-intr/builds/2010-11-21_20-51-04/archive/org.cytoscape/util-intr/1.0-20101122.015137-1/util-intr-1.0-SNAPSHOT-sources.jar
[INFO] ------------------------------------------------------------------------
[ERROR] BUILD ERROR
[INFO] ------------------------------------------------------------------------
[INFO] Error deploying artifact: Failed to transfer file:
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/util-intr/1.0-SNAPSHOT/util-intr-1.0-20101122.015137-1.jar.
Return code is: 500
[INFO] ------------------------------------------------------------------------
[INFO] For more information, run Maven with the -e switch
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 32 seconds
[INFO] Finished at: Sun Nov 21 20:51:38 EST 2010
[INFO] Final Memory: 64M/725M
[INFO] ------------------------------------------------------------------------
Sending e-mails to: [email protected]
channel stopped
[trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn
org.codehaus.sonar:sonar-maven-plugin:1.8:sonar
-Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar
-Dsonar.jdbc.password=deploysonar
-Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar
-Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true
[INFO] Scanning for projects...
Downloading:
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/parent/1.0-SNAPSHOT/parent-1.0-SNAPSHOT.pom
[INFO] Unable to find resource 'org.cytoscape:parent:pom:1.0-SNAPSHOT' in
repository cytoscape_snapshots
(http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/)
WAGON_VERSION: 1.0-beta-2
[INFO] ------------------------------------------------------------------------
[INFO] Building org.cytoscape.util-intr
[INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar]
(aggregator-style)
[INFO] ------------------------------------------------------------------------
[INFO] [sonar:sonar]
[INFO] Sonar host: http://localhost:8021/sonar
[INFO] Sonar version: 2.4
[INFO] [sonar-core:internal]
[INFO] Database dialect class org.sonar.jpa.dialect.MySql
[INFO] ------------- Analyzing org.cytoscape.util-intr
[INFO] Selected quality profile : [name=Cytoscape,language=java]
[INFO] Configure maven plugins...
[INFO] Sensor JavaSourceImporter...
[INFO] Sensor JavaSourceImporter done: 487 ms
[INFO] Sensor AsynchronousMeasuresSensor...
[INFO] Sensor AsynchronousMeasuresSensor done: 29 ms
[INFO] Sensor SquidSensor...
[INFO] Java AST scan...
[INFO] Java AST scan done: 655 ms
[INFO] Java bytecode scan...
[INFO] Java bytecode scan done: 93 ms
[INFO] Squid extraction...
[INFO] Package design analysis...
[INFO] Package design analysis done: 7 ms
[INFO] Squid extraction done: 291 ms
[INFO] Sensor SquidSensor done: 1107 ms
[INFO] Sensor FindbugsSensor...
[INFO] Execute Findbugs 1.3.9...
[INFO] Findbugs output report:
<http://cytoscape.wodaklab.org/hudson/job/Util-Intr/ws/trunk/target/sonar/findbugs-result.xml>
[INFO] Execute Findbugs 1.3.9 done: 7572 ms
[INFO] Sensor FindbugsSensor done: 7753 ms
[INFO] Execute maven plugin cobertura-maven-plugin...
[INFO] ------------------------------------------------------------------------
[INFO] Building org.cytoscape.util-intr
[INFO] task-segment: [org.codehaus.mojo:cobertura-maven-plugin::cobertura]
[INFO] ------------------------------------------------------------------------
[INFO] Preparing cobertura:cobertura
[INFO] [resources:resources]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory
<http://cytoscape.wodaklab.org/hudson/job/Util-Intr/ws/trunk/src/main/resources>
[INFO] Copying 0 resource
[INFO] [pax:compile]
[INFO] Nothing to compile - all classes are up to date
[INFO] [cobertura:instrument]
[INFO] Cobertura 1.9.4.1 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file
Instrumenting 33 files to
<http://cytoscape.wodaklab.org/hudson/job/Util-Intr/ws/trunk/target/generated-classes/cobertura>
[cobertura] WARN [main] net.sourceforge.cobertura.instrument.ClassInstrumenter
- No line number information found for class
org.cytoscape.util.intr.IntBTree$1. Perhaps you need to compile with
debug=true?
Cobertura: Saved information on 33 classes.
Instrument time: 1097ms
[INFO] Instrumentation was successful.
[INFO] [resources:testResources]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory
<http://cytoscape.wodaklab.org/hudson/job/Util-Intr/ws/trunk/src/test/resources>
[INFO] [pax:testCompile]
[INFO] Nothing to compile - all classes are up to date
[INFO] [surefire:test]
[INFO] Surefire report directory:
<http://cytoscape.wodaklab.org/hudson/job/Util-Intr/ws/trunk/target/surefire-reports>
-------------------------------------------------------
T E S T S
-------------------------------------------------------
There are no tests to run.
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[INFO] [cobertura:cobertura]
[INFO] Cobertura 1.9.4.1 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file
Cobertura: Loaded information on 33 classes.
Report time: 708ms
[INFO] Cobertura Report generation was successful.
[INFO] Execute maven plugin cobertura-maven-plugin done: 6553 ms
[INFO] Sensor CoberturaSensor...
[INFO] parsing
<http://cytoscape.wodaklab.org/hudson/job/Util-Intr/ws/trunk/target/site/cobertura/coverage.xml>
[INFO] Sensor CoberturaSensor done: 237 ms
[INFO] Sensor CpdSensor...
[INFO] Sensor CpdSensor done: 207 ms
[INFO] Sensor CheckstyleSensor...
[INFO] Execute Checkstyle 5.1...
[INFO] Checkstyle configuration:
<http://cytoscape.wodaklab.org/hudson/job/Util-Intr/ws/trunk/target/sonar/checkstyle.xml>
[INFO] Execute Checkstyle 5.1 done: 1104 ms
[INFO] Sensor CheckstyleSensor done: 1129 ms
[INFO] Sensor PmdSensor...
[INFO] Execute PMD 4.2.5...
[INFO] Java version: 1.6
[INFO] PMD configuration:
<http://cytoscape.wodaklab.org/hudson/job/Util-Intr/ws/trunk/target/sonar/pmd.xml>
[INFO] PMD output report:
<http://cytoscape.wodaklab.org/hudson/job/Util-Intr/ws/trunk/target/sonar/pmd-result.xml>
[INFO] Execute PMD 4.2.5 done: 2720 ms
[INFO] Sensor PmdSensor done: 2806 ms
[INFO] Sensor ProfileSensor...
[INFO] Sensor ProfileSensor done: 25 ms
[INFO] Sensor ProjectLinksSensor...
[INFO] Sensor ProjectLinksSensor done: 5 ms
[INFO] Sensor VersionEventsSensor...
[INFO] Sensor VersionEventsSensor done: 37 ms
[INFO] Sensor Maven dependencies...
[INFO] Sensor Maven dependencies done: 49 ms
[INFO] Sensor SurefireSensor...
[INFO] parsing
<http://cytoscape.wodaklab.org/hudson/job/Util-Intr/ws/trunk/target/surefire-reports>
[INFO] Sensor SurefireSensor done: 34 ms
[INFO] Execute decorators...
[INFO] ANALYSIS SUCCESSFUL, you can browse http://localhost:8021/sonar
[INFO] Database optimization...
[INFO] Deleting files data before Sun Nov 21 08:52:17 EST 2010
[INFO] Deleting unprocessed data before Sun Nov 21 08:52:17 EST 2010
[INFO] Database optimization done: 523 ms
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESSFUL
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 28 seconds
[INFO] Finished at: Sun Nov 21 20:52:17 EST 2010
[INFO] Final Memory: 63M/723M
[INFO] ------------------------------------------------------------------------
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