See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/1742/>
------------------------------------------ [...truncated 1431 lines...] Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/event-api/1.0-SNAPSHOT/event-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:event-api:jar:1.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/event-api/1.0-SNAPSHOT/event-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:event-api:jar:1.0-SNAPSHOT' in repository cytoscape_biopax_snapshot (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi//org/cytoscape/event-api/1.0-SNAPSHOT/event-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:event-api:jar:1.0-SNAPSHOT' in repository spring-osgi (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external//org/cytoscape/event-api/1.0-SNAPSHOT/event-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:event-api:jar:1.0-SNAPSHOT' in repository spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/model-api/1.0-SNAPSHOT/model-api-1.0-SNAPSHOT-tests.jar [INFO] Unable to find resource 'org.cytoscape:model-api:test-jar:tests:1.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/model-api/1.0-SNAPSHOT/model-api-1.0-SNAPSHOT-tests.jar [INFO] Unable to find resource 'org.cytoscape:model-api:test-jar:tests:1.0-SNAPSHOT' in repository cytoscape_biopax_snapshot (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi//org/cytoscape/model-api/1.0-SNAPSHOT/model-api-1.0-SNAPSHOT-tests.jar [INFO] Unable to find resource 'org.cytoscape:model-api:test-jar:tests:1.0-SNAPSHOT' in repository spring-osgi (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external//org/cytoscape/model-api/1.0-SNAPSHOT/model-api-1.0-SNAPSHOT-tests.jar [INFO] Unable to find resource 'org.cytoscape:model-api:test-jar:tests:1.0-SNAPSHOT' in repository spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/event-api/1.0-SNAPSHOT/event-api-1.0-SNAPSHOT-tests.jar [INFO] Unable to find resource 'org.cytoscape:event-api:test-jar:tests:1.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/event-api/1.0-SNAPSHOT/event-api-1.0-SNAPSHOT-tests.jar [INFO] Unable to find resource 'org.cytoscape:event-api:test-jar:tests:1.0-SNAPSHOT' in repository cytoscape_biopax_snapshot (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi//org/cytoscape/event-api/1.0-SNAPSHOT/event-api-1.0-SNAPSHOT-tests.jar [INFO] Unable to find resource 'org.cytoscape:event-api:test-jar:tests:1.0-SNAPSHOT' in repository spring-osgi (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external//org/cytoscape/event-api/1.0-SNAPSHOT/event-api-1.0-SNAPSHOT-tests.jar [INFO] Unable to find resource 'org.cytoscape:event-api:test-jar:tests:1.0-SNAPSHOT' in repository spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/service-util/1.0-SNAPSHOT/service-util-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:service-util:jar:1.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/service-util/1.0-SNAPSHOT/service-util-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:service-util:jar:1.0-SNAPSHOT' in repository cytoscape_biopax_snapshot (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi//org/cytoscape/service-util/1.0-SNAPSHOT/service-util-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:service-util:jar:1.0-SNAPSHOT' in repository spring-osgi (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external//org/cytoscape/service-util/1.0-SNAPSHOT/service-util-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:service-util:jar:1.0-SNAPSHOT' in repository spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/model-impl/1.0-SNAPSHOT/model-impl-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:model-impl:jar:1.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/model-impl/1.0-SNAPSHOT/model-impl-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:model-impl:jar:1.0-SNAPSHOT' in repository cytoscape_biopax_snapshot (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi//org/cytoscape/model-impl/1.0-SNAPSHOT/model-impl-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:model-impl:jar:1.0-SNAPSHOT' in repository spring-osgi (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external//org/cytoscape/model-impl/1.0-SNAPSHOT/model-impl-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:model-impl:jar:1.0-SNAPSHOT' in repository spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/viewmodel-impl/1.0-SNAPSHOT/viewmodel-impl-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:viewmodel-impl:jar:1.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/viewmodel-impl/1.0-SNAPSHOT/viewmodel-impl-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:viewmodel-impl:jar:1.0-SNAPSHOT' in repository cytoscape_biopax_snapshot (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi//org/cytoscape/viewmodel-impl/1.0-SNAPSHOT/viewmodel-impl-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:viewmodel-impl:jar:1.0-SNAPSHOT' in repository spring-osgi (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external//org/cytoscape/viewmodel-impl/1.0-SNAPSHOT/viewmodel-impl-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:viewmodel-impl:jar:1.0-SNAPSHOT' in repository spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/model-api/1.0-SNAPSHOT/model-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:model-api:jar:1.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/model-api/1.0-SNAPSHOT/model-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:model-api:jar:1.0-SNAPSHOT' in repository cytoscape_biopax_snapshot (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi//org/cytoscape/model-api/1.0-SNAPSHOT/model-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:model-api:jar:1.0-SNAPSHOT' in repository spring-osgi (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external//org/cytoscape/model-api/1.0-SNAPSHOT/model-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:model-api:jar:1.0-SNAPSHOT' in repository spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/event-api/1.0-SNAPSHOT/event-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:event-api:jar:1.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/event-api/1.0-SNAPSHOT/event-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:event-api:jar:1.0-SNAPSHOT' in repository cytoscape_biopax_snapshot (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi//org/cytoscape/event-api/1.0-SNAPSHOT/event-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:event-api:jar:1.0-SNAPSHOT' in repository spring-osgi (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external//org/cytoscape/event-api/1.0-SNAPSHOT/event-api-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:event-api:jar:1.0-SNAPSHOT' in repository spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/model-api/1.0-SNAPSHOT/model-api-1.0-SNAPSHOT-tests.jar [INFO] Unable to find resource 'org.cytoscape:model-api:test-jar:tests:1.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/model-api/1.0-SNAPSHOT/model-api-1.0-SNAPSHOT-tests.jar [INFO] Unable to find resource 'org.cytoscape:model-api:test-jar:tests:1.0-SNAPSHOT' in repository cytoscape_biopax_snapshot (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi//org/cytoscape/model-api/1.0-SNAPSHOT/model-api-1.0-SNAPSHOT-tests.jar [INFO] Unable to find resource 'org.cytoscape:model-api:test-jar:tests:1.0-SNAPSHOT' in repository spring-osgi (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external//org/cytoscape/model-api/1.0-SNAPSHOT/model-api-1.0-SNAPSHOT-tests.jar [INFO] Unable to find resource 'org.cytoscape:model-api:test-jar:tests:1.0-SNAPSHOT' in repository spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/event-api/1.0-SNAPSHOT/event-api-1.0-SNAPSHOT-tests.jar [INFO] Unable to find resource 'org.cytoscape:event-api:test-jar:tests:1.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/event-api/1.0-SNAPSHOT/event-api-1.0-SNAPSHOT-tests.jar [INFO] Unable to find resource 'org.cytoscape:event-api:test-jar:tests:1.0-SNAPSHOT' in repository cytoscape_biopax_snapshot (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi//org/cytoscape/event-api/1.0-SNAPSHOT/event-api-1.0-SNAPSHOT-tests.jar [INFO] Unable to find resource 'org.cytoscape:event-api:test-jar:tests:1.0-SNAPSHOT' in repository spring-osgi (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external//org/cytoscape/event-api/1.0-SNAPSHOT/event-api-1.0-SNAPSHOT-tests.jar [INFO] Unable to find resource 'org.cytoscape:event-api:test-jar:tests:1.0-SNAPSHOT' in repository spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/service-util/1.0-SNAPSHOT/service-util-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:service-util:jar:1.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/service-util/1.0-SNAPSHOT/service-util-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:service-util:jar:1.0-SNAPSHOT' in repository cytoscape_biopax_snapshot (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi//org/cytoscape/service-util/1.0-SNAPSHOT/service-util-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:service-util:jar:1.0-SNAPSHOT' in repository spring-osgi (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external//org/cytoscape/service-util/1.0-SNAPSHOT/service-util-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:service-util:jar:1.0-SNAPSHOT' in repository spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/model-impl/1.0-SNAPSHOT/model-impl-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:model-impl:jar:1.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/model-impl/1.0-SNAPSHOT/model-impl-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:model-impl:jar:1.0-SNAPSHOT' in repository cytoscape_biopax_snapshot (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi//org/cytoscape/model-impl/1.0-SNAPSHOT/model-impl-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:model-impl:jar:1.0-SNAPSHOT' in repository spring-osgi (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external//org/cytoscape/model-impl/1.0-SNAPSHOT/model-impl-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:model-impl:jar:1.0-SNAPSHOT' in repository spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/viewmodel-impl/1.0-SNAPSHOT/viewmodel-impl-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:viewmodel-impl:jar:1.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/viewmodel-impl/1.0-SNAPSHOT/viewmodel-impl-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:viewmodel-impl:jar:1.0-SNAPSHOT' in repository cytoscape_biopax_snapshot (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi//org/cytoscape/viewmodel-impl/1.0-SNAPSHOT/viewmodel-impl-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:viewmodel-impl:jar:1.0-SNAPSHOT' in repository spring-osgi (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external//org/cytoscape/viewmodel-impl/1.0-SNAPSHOT/viewmodel-impl-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:viewmodel-impl:jar:1.0-SNAPSHOT' in repository spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external/) [INFO] [surefire:test] [INFO] Surefire report directory: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/target/surefire-reports> ------------------------------------------------------- T E S T S ------------------------------------------------------- Running org.cytoscape.io.internal.read.gml.GMLNetworkViewReaderTest Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.44 sec Running org.cytoscape.io.internal.read.sif.SIFNetworkViewReaderTest Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.15 sec Running org.cytoscape.io.internal.read.gml.GMLFileFilterTest Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.101 sec Running org.cytoscape.io.internal.read.xgmml.XGMMLNetworkViewReaderTest Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.883 sec Running org.cytoscape.io.internal.read.sif.InteractionTest Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.052 sec Running org.cytoscape.io.internal.read.datatable.TextDataTableReaderTest Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.157 sec Results : Tests run: 18, Failures: 0, Errors: 0, Skipped: 0 [INFO] [cobertura:cobertura] [INFO] Cobertura 1.9.4.1 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file Cobertura: Loaded information on 119 classes. Report time: 2035ms [INFO] Cobertura Report generation was successful. [INFO] Execute maven plugin cobertura-maven-plugin done: 20622 ms [INFO] Sensor CoberturaSensor... [INFO] parsing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/target/site/cobertura/coverage.xml> [INFO] Sensor CoberturaSensor done: 634 ms [INFO] Sensor CpdSensor... [INFO] Sensor CpdSensor done: 261 ms [INFO] Sensor CheckstyleSensor... [INFO] Execute Checkstyle 5.1... [INFO] Checkstyle configuration: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/target/sonar/checkstyle.xml> [INFO] Execute Checkstyle 5.1 done: 1965 ms [INFO] Sensor CheckstyleSensor done: 1988 ms [INFO] Sensor PmdSensor... [INFO] Execute PMD 4.2.5... [INFO] Java version: 1.6 [INFO] PMD configuration: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/target/sonar/pmd.xml> [ERROR] Fail to execute PMD. Following file is ignored: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/src/main/java/org/cytoscape/io/internal/read/gml/GMLNetworkViewReader.java> java.lang.ClassCastException: net.sourceforge.pmd.ast.ASTReferenceType cannot be cast to net.sourceforge.pmd.ast.ASTVariableDeclaratorId at net.sourceforge.pmd.rules.UselessOperationOnImmutable.getDeclaration(UselessOperationOnImmutable.java:89) [pmd-4.2.5.jar:na] at net.sourceforge.pmd.rules.UselessOperationOnImmutable.visit(UselessOperationOnImmutable.java:54) [pmd-4.2.5.jar:na] at net.sourceforge.pmd.ast.ASTLocalVariableDeclaration.jjtAccept(ASTLocalVariableDeclaration.java:21) [pmd-4.2.5.jar:na] at net.sourceforge.pmd.ast.SimpleJavaNode.childrenAccept(SimpleJavaNode.java:44) [pmd-4.2.5.jar:na] at net.sourceforge.pmd.AbstractJavaRule.visit(AbstractJavaRule.java:135) [pmd-4.2.5.jar:na] at net.sourceforge.pmd.AbstractJavaRule.visit(AbstractJavaRule.java:488) [pmd-4.2.5.jar:na] at net.sourceforge.pmd.ast.ASTBlockStatement.jjtAccept(ASTBlockStatement.java:19) [pmd-4.2.5.jar:na] at net.sourceforge.pmd.ast.SimpleJavaNode.childrenAccept(SimpleJavaNode.java:44) [pmd-4.2.5.jar:na] at net.sourceforge.pmd.AbstractJavaRule.visit(AbstractJavaRule.java:135) [pmd-4.2.5.jar:na] at net.sourceforge.pmd.AbstractJavaRule.visit(AbstractJavaRule.java:484) [pmd-4.2.5.jar:na] at net.sourceforge.pmd.ast.ASTBlock.jjtAccept(ASTBlock.java:19) [pmd-4.2.5.jar:na] at net.sourceforge.pmd.ast.SimpleJavaNode.childrenAccept(SimpleJavaNode.java:44) [pmd-4.2.5.jar:na] at net.sourceforge.pmd.AbstractJavaRule.visit(AbstractJavaRule.java:135) [pmd-4.2.5.jar:na] at net.sourceforge.pmd.AbstractJavaRule.visit(AbstractJavaRule.java:308) [pmd-4.2.5.jar:na] at net.sourceforge.pmd.ast.ASTMethodDeclaration.jjtAccept(ASTMethodDeclaration.java:18) [pmd-4.2.5.jar:na] at net.sourceforge.pmd.ast.SimpleJavaNode.childrenAccept(SimpleJavaNode.java:44) [pmd-4.2.5.jar:na] at net.sourceforge.pmd.AbstractJavaRule.visit(AbstractJavaRule.java:135) [pmd-4.2.5.jar:na] at net.sourceforge.pmd.AbstractJavaRule.visit(AbstractJavaRule.java:172) [pmd-4.2.5.jar:na] at net.sourceforge.pmd.ast.ASTClassOrInterfaceBodyDeclaration.jjtAccept(ASTClassOrInterfaceBodyDeclaration.java:34) [pmd-4.2.5.jar:na] at net.sourceforge.pmd.ast.SimpleJavaNode.childrenAccept(SimpleJavaNode.java:44) [pmd-4.2.5.jar:na] at net.sourceforge.pmd.AbstractJavaRule.visit(AbstractJavaRule.java:135) [pmd-4.2.5.jar:na] at net.sourceforge.pmd.AbstractJavaRule.visit(AbstractJavaRule.java:168) [pmd-4.2.5.jar:na] at net.sourceforge.pmd.ast.ASTClassOrInterfaceBody.jjtAccept(ASTClassOrInterfaceBody.java:19) [pmd-4.2.5.jar:na] at net.sourceforge.pmd.ast.SimpleJavaNode.childrenAccept(SimpleJavaNode.java:44) [pmd-4.2.5.jar:na] at net.sourceforge.pmd.AbstractJavaRule.visit(AbstractJavaRule.java:135) [pmd-4.2.5.jar:na] at net.sourceforge.pmd.AbstractJavaRule.visit(AbstractJavaRule.java:144) [pmd-4.2.5.jar:na] at net.sourceforge.pmd.ast.ASTClassOrInterfaceDeclaration.jjtAccept(ASTClassOrInterfaceDeclaration.java:18) [pmd-4.2.5.jar:na] at net.sourceforge.pmd.ast.SimpleJavaNode.childrenAccept(SimpleJavaNode.java:44) [pmd-4.2.5.jar:na] at net.sourceforge.pmd.AbstractJavaRule.visit(AbstractJavaRule.java:135) [pmd-4.2.5.jar:na] at net.sourceforge.pmd.AbstractJavaRule.visit(AbstractJavaRule.java:284) [pmd-4.2.5.jar:na] at net.sourceforge.pmd.ast.ASTTypeDeclaration.jjtAccept(ASTTypeDeclaration.java:33) [pmd-4.2.5.jar:na] at net.sourceforge.pmd.ast.SimpleJavaNode.childrenAccept(SimpleJavaNode.java:44) [pmd-4.2.5.jar:na] at net.sourceforge.pmd.AbstractJavaRule.visit(AbstractJavaRule.java:135) [pmd-4.2.5.jar:na] at net.sourceforge.pmd.AbstractJavaRule.visit(AbstractJavaRule.java:264) [pmd-4.2.5.jar:na] at net.sourceforge.pmd.AbstractJavaRule.visitAll(AbstractJavaRule.java:93) [pmd-4.2.5.jar:na] at net.sourceforge.pmd.AbstractJavaRule.apply(AbstractJavaRule.java:87) [pmd-4.2.5.jar:na] at net.sourceforge.pmd.AbstractDelegateRule.apply(AbstractDelegateRule.java:180) [pmd-4.2.5.jar:na] at net.sourceforge.pmd.RuleSet.apply(RuleSet.java:179) [pmd-4.2.5.jar:na] at net.sourceforge.pmd.RuleSets.apply(RuleSets.java:138) [pmd-4.2.5.jar:na] at net.sourceforge.pmd.PMD.processFile(PMD.java:126) [pmd-4.2.5.jar:na] at net.sourceforge.pmd.PMD.processFile(PMD.java:75) [pmd-4.2.5.jar:na] at org.sonar.plugins.pmd.PmdExecutor.execute(PmdExecutor.java:68) [sonar-pmd-plugin-2.4.jar:na] at org.sonar.plugins.pmd.PmdSensor.analyse(PmdSensor.java:47) [sonar-pmd-plugin-2.4.jar:na] at org.sonar.batch.SensorsExecutor.execute(SensorsExecutor.java:58) [sonar-batch-2.4.jar:na] at org.sonar.batch.ProjectBatch.execute(ProjectBatch.java:59) [sonar-batch-2.4.jar:na] at org.sonar.batch.Batch.analyzeProject(Batch.java:120) [sonar-batch-2.4.jar:na] at org.sonar.batch.Batch.analyzeProjects(Batch.java:83) [sonar-batch-2.4.jar:na] at org.sonar.batch.Batch.execute(Batch.java:58) [sonar-batch-2.4.jar:na] at org.sonar.maven2.BatchMojo.executeBatch(BatchMojo.java:142) [sonar-core-maven-plugin-20101124094751.jar:na] at org.sonar.maven2.BatchMojo.execute(BatchMojo.java:133) [sonar-core-maven-plugin-20101124094751.jar:na] at org.apache.maven.plugin.DefaultPluginManager.executeMojo(DefaultPluginManager.java:483) [maven-2.1.0-uber.jar:2.1.0] at org.sonar.mojo.bootstrap.Bootstraper.executeMojo(Bootstraper.java:76) [sonar-maven-plugin-1.8.jar:na] at org.sonar.mojo.bootstrap.Bootstraper.start(Bootstraper.java:62) [sonar-maven-plugin-1.8.jar:na] at org.sonar.mojo.bootstrap.SonarMojo.execute(SonarMojo.java:112) [sonar-maven-plugin-1.8.jar:na] at org.apache.maven.plugin.DefaultPluginManager.executeMojo(DefaultPluginManager.java:483) [maven-2.1.0-uber.jar:2.1.0] at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoals(DefaultLifecycleExecutor.java:678) [maven-2.1.0-uber.jar:2.1.0] at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeStandaloneGoal(DefaultLifecycleExecutor.java:553) [maven-2.1.0-uber.jar:2.1.0] at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoal(DefaultLifecycleExecutor.java:523) [maven-2.1.0-uber.jar:2.1.0] at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoalAndHandleFailures(DefaultLifecycleExecutor.java:371) [maven-2.1.0-uber.jar:2.1.0] at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeTaskSegments(DefaultLifecycleExecutor.java:268) [maven-2.1.0-uber.jar:2.1.0] at org.apache.maven.lifecycle.DefaultLifecycleExecutor.execute(DefaultLifecycleExecutor.java:181) [maven-2.1.0-uber.jar:2.1.0] at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:356) [maven-2.1.0-uber.jar:2.1.0] at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:137) [maven-2.1.0-uber.jar:2.1.0] at org.apache.maven.cli.MavenCli.main(MavenCli.java:356) [maven-2.1.0-uber.jar:2.1.0] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [na:1.6.0_20] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) [na:1.6.0_20] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) [na:1.6.0_20] at java.lang.reflect.Method.invoke(Method.java:597) [na:1.6.0_20] at org.codehaus.classworlds.Launcher.launchEnhanced(Launcher.java:315) [classworlds-1.1.jar:1.1] at org.codehaus.classworlds.Launcher.launch(Launcher.java:255) [classworlds-1.1.jar:1.1] at org.codehaus.classworlds.Launcher.mainWithExitCode(Launcher.java:430) [classworlds-1.1.jar:1.1] at org.codehaus.classworlds.Launcher.main(Launcher.java:375) [classworlds-1.1.jar:1.1] [INFO] PMD output report: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/target/sonar/pmd-result.xml> [INFO] Execute PMD 4.2.5 done: 6087 ms [INFO] Sensor PmdSensor done: 6292 ms [INFO] Sensor ProfileSensor... [INFO] Sensor ProfileSensor done: 26 ms [INFO] Sensor ProjectLinksSensor... [INFO] Sensor ProjectLinksSensor done: 4 ms [INFO] Sensor VersionEventsSensor... [INFO] Sensor VersionEventsSensor done: 37 ms [INFO] Sensor Maven dependencies... [INFO] Sensor Maven dependencies done: 174 ms [INFO] Sensor SurefireSensor... [INFO] parsing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/target/surefire-reports> [INFO] Sensor SurefireSensor done: 50 ms [INFO] Execute decorators... [INFO] ANALYSIS SUCCESSFUL, you can browse http://localhost:8021/sonar [INFO] Database optimization... [INFO] Deleting files data before Wed Nov 24 08:11:43 EST 2010 [INFO] Deleting unprocessed data before Wed Nov 24 08:11:44 EST 2010 [INFO] Database optimization done: 1195 ms [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESSFUL [INFO] ------------------------------------------------------------------------ [INFO] Total time: 1 minute 4 seconds [INFO] Finished at: Wed Nov 24 20:11:45 EST 2010 [INFO] Final Memory: 78M/756M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/cytoscape-cvs?hl=en.
