See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/147/>

------------------------------------------
[...truncated 316 lines...]
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/src/main/java/org/cytoscape/plugin/internal/ui/PluginUpdateDialog.java>:89:
 warning - @param argument "Plugins" is not a parameter name.
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/src/main/java/org/cytoscape/plugin/internal/ui/PluginUpdateDialog.java>:89:
 warning - @param argument "Status" is not a parameter name.
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/src/main/java/org/cytoscape/plugin/internal/ui/TreeNode.java>:259:
 warning - @return tag has no arguments.
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/src/main/java/org/cytoscape/plugin/internal/ui/TreeNode.java>:119:
 warning - @return tag has no arguments.
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/src/main/java/org/cytoscape/plugin/internal/ui/TreeNode.java>:132:
 warning - @return tag has no arguments.
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/src/main/java/org/cytoscape/plugin/internal/util/FileUtil.java>:176:
 warning - @param argument "filters" is not a parameter name.
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/src/main/java/org/cytoscape/plugin/internal/util/URLUtil.java>:161:
 warning - @return tag has no arguments.
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/src/main/java/org/cytoscape/plugin/internal/util/URLUtil.java>:161:
 warning - @return tag cannot be used in method with void return type.
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/src/main/java/org/cytoscape/plugin/internal/util/ZipUtil.java>:72:
 warning - Tag @see: reference not found: 
cytoscape.data.writers.CytoscapeSessionWriter
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/src/main/java/org/cytoscape/plugin/internal/util/ZipUtil.java>:393:
 warning - @return tag has no arguments.
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/src/main/java/org/cytoscape/plugin/internal/util/ZipUtil.java>:430:
 warning - @param argument "is" is not a parameter name.
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/src/main/java/org/cytoscape/plugin/internal/CytoscapePlugin.java>:61:
 warning - Tag @link: can't find describe in 
org.cytoscape.plugin.internal.CytoscapePlugin
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/src/main/java/org/cytoscape/plugin/internal/DownloadableInfo.java>:490:
 warning - @return tag has no arguments.
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/src/main/java/org/cytoscape/plugin/internal/PluginFileReader.java>:114:
 warning - @return tag has no arguments.
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/src/main/java/org/cytoscape/plugin/internal/PluginFileReader.java>:127:
 warning - @return tag has no arguments.
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/src/main/java/org/cytoscape/plugin/internal/PluginInquireAction.java>:14:
 warning - Tag @link: can't find inquireThread(String, PluginInquireAction) in 
org.cytoscape.plugin.internal.PluginManager
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/src/main/java/org/cytoscape/plugin/internal/PluginInquireAction.java>:74:
 warning - @param tag has no arguments.
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/src/main/java/org/cytoscape/plugin/internal/PluginInquireAction.java>:44:
 warning - Tag @link: can't find inquireThread(String, PluginInquireAction) in 
org.cytoscape.plugin.internal.PluginManager
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/src/main/java/org/cytoscape/plugin/internal/PluginInquireAction.java>:74:
 warning - @param argument "" is not a parameter name.
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/src/main/java/org/cytoscape/plugin/internal/PluginManager.java>:328:
 warning - @return tag has no arguments.
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/src/main/java/org/cytoscape/plugin/internal/PluginManager.java>:231:
 warning - @return tag has no arguments.
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/src/main/java/org/cytoscape/plugin/internal/PluginManager.java>:355:
 warning - @param argument "JarFileName" is not a parameter name.
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/src/main/java/org/cytoscape/plugin/internal/PluginManager.java>:569:
 warning - @param argument "Current" is not a parameter name.
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/src/main/java/org/cytoscape/plugin/internal/PluginManager.java>:569:
 warning - @param argument "New" is not a parameter name.
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/src/main/java/org/cytoscape/plugin/internal/PluginManager.java>:608:
 warning - @param argument "tempDirectory" is not a parameter name.
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/src/main/java/org/cytoscape/plugin/internal/PluginManager.java>:684:
 warning - @param argument "PluginInfo" is not a parameter name.
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/src/main/java/org/cytoscape/plugin/internal/PluginProperties.java>:117:
 warning - @return tag has no arguments.
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/src/main/java/org/cytoscape/plugin/internal/PluginTracker.java>:197:
 warning - @return tag has no arguments.
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/src/main/java/org/cytoscape/plugin/internal/PluginTracker.java>:364:
 warning - @return tag has no arguments.
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/src/main/java/org/cytoscape/plugin/internal/PluginTracker.java>:364:
 warning - @param argument "Tag" is not a parameter name.
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/src/main/java/org/cytoscape/plugin/internal/PluginVersionUtils.java>:34:
 warning - @return tag has no arguments.
[WARNING] 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/src/main/java/org/cytoscape/plugin/internal/ThemeInfo.java>:64:
 warning - @param argument "UniqueID" is not a parameter name.
[INFO] Building jar: 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/target/plugin-impl-3.0.0-alpha2-SNAPSHOT-javadoc.jar>
[INFO] Preparing source:jar
[WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation.
[INFO] No goals needed for project - skipping
[INFO] [source:jar {execution: attach-sources}]
[INFO] Building jar: 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/target/plugin-impl-3.0.0-alpha2-SNAPSHOT-sources.jar>
[INFO] [install:install]
[INFO] Installing 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/target/plugin-impl-3.0.0-alpha2-SNAPSHOT.jar>
 to 
/home/bturner/.m2/repository/org/cytoscape/plugin-impl/3.0.0-alpha2-SNAPSHOT/plugin-impl-3.0.0-alpha2-SNAPSHOT.jar
[INFO] Installing 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/target/plugin-impl-3.0.0-alpha2-SNAPSHOT-javadoc.jar>
 to 
/home/bturner/.m2/repository/org/cytoscape/plugin-impl/3.0.0-alpha2-SNAPSHOT/plugin-impl-3.0.0-alpha2-SNAPSHOT-javadoc.jar
[INFO] Installing 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/target/plugin-impl-3.0.0-alpha2-SNAPSHOT-sources.jar>
 to 
/home/bturner/.m2/repository/org/cytoscape/plugin-impl/3.0.0-alpha2-SNAPSHOT/plugin-impl-3.0.0-alpha2-SNAPSHOT-sources.jar
[INFO] [bundle:install]
[INFO] Parsing file:/home/bturner/.m2/repository/repository.xml
[Fatal Error] repository.xml:3:1: Premature end of file.
org.xml.sax.SAXParseException: Premature end of file.
        at 
com.sun.org.apache.xerces.internal.parsers.DOMParser.parse(DOMParser.java:249)
        at 
com.sun.org.apache.xerces.internal.jaxp.DocumentBuilderImpl.parse(DocumentBuilderImpl.java:284)
        at javax.xml.parsers.DocumentBuilder.parse(DocumentBuilder.java:208)
        at org.apache.felix.obrplugin.ObrUpdate.parseFile(ObrUpdate.java:347)
        at 
org.apache.felix.obrplugin.ObrUpdate.parseRepositoryXml(ObrUpdate.java:324)
        at org.apache.felix.obrplugin.ObrInstall.execute(ObrInstall.java:140)
        at 
org.apache.maven.plugin.DefaultPluginManager.executeMojo(DefaultPluginManager.java:483)
        at 
hudson.maven.agent.PluginManagerInterceptor.executeMojo(PluginManagerInterceptor.java:182)
        at 
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoals(DefaultLifecycleExecutor.java:678)
        at 
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoalWithLifecycle(DefaultLifecycleExecutor.java:540)
        at 
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoal(DefaultLifecycleExecutor.java:519)
        at 
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoalAndHandleFailures(DefaultLifecycleExecutor.java:371)
        at 
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeTaskSegments(DefaultLifecycleExecutor.java:332)
        at 
org.apache.maven.lifecycle.DefaultLifecycleExecutor.execute(DefaultLifecycleExecutor.java:181)
        at 
org.apache.maven.lifecycle.LifecycleExecutorInterceptor.execute(LifecycleExecutorInterceptor.java:65)
        at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:356)
        at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:137)
        at org.apache.maven.cli.MavenCli.main(MavenCli.java:356)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at 
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
        at 
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
        at java.lang.reflect.Method.invoke(Method.java:597)
        at org.codehaus.classworlds.Launcher.launchEnhanced(Launcher.java:315)
        at org.codehaus.classworlds.Launcher.launch(Launcher.java:255)
        at hudson.maven.agent.Main.launch(Main.java:165)
        at hudson.maven.MavenBuilder.call(MavenBuilder.java:165)
        at 
hudson.maven.MavenModuleSetBuild$Builder.call(MavenModuleSetBuild.java:750)
        at 
hudson.maven.MavenModuleSetBuild$Builder.call(MavenModuleSetBuild.java:694)
        at hudson.remoting.UserRequest.perform(UserRequest.java:114)
        at hudson.remoting.UserRequest.perform(UserRequest.java:48)
        at hudson.remoting.Request$2.run(Request.java:270)
        at 
java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441)
        at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
        at java.util.concurrent.FutureTask.run(FutureTask.java:138)
        at 
java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
        at 
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
        at java.lang.Thread.run(Thread.java:619)
[INFO] Writing OBR metadata
[INFO] [deploy:deploy]
[INFO] Retrieving previous build number from snapshots
[INFO] repository metadata for: 'snapshot 
org.cytoscape:plugin-impl:3.0.0-alpha2-SNAPSHOT' could not be found on 
repository: snapshots, so will be created
Uploading: 
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/plugin-impl/3.0.0-alpha2-SNAPSHOT/plugin-impl-3.0.0-alpha2-20101125.012033-1.jar
[HUDSON] Archiving 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/pom.xml> 
to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Plugin 
impl/modules/org.cytoscape$plugin-impl/builds/2010-11-24_20-19-39/archive/org.cytoscape/plugin-impl/3.0.0-alpha2-SNAPSHOT/pom.xml
[HUDSON] Archiving 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/target/plugin-impl-3.0.0-alpha2-SNAPSHOT.jar>
 to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Plugin 
impl/modules/org.cytoscape$plugin-impl/builds/2010-11-24_20-19-39/archive/org.cytoscape/plugin-impl/3.0.0-alpha2-20101125.012033-1/plugin-impl-3.0.0-alpha2-SNAPSHOT.jar
[HUDSON] Archiving 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/target/plugin-impl-3.0.0-alpha2-SNAPSHOT-javadoc.jar>
 to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Plugin 
impl/modules/org.cytoscape$plugin-impl/builds/2010-11-24_20-19-39/archive/org.cytoscape/plugin-impl/3.0.0-alpha2-20101125.012033-1/plugin-impl-3.0.0-alpha2-SNAPSHOT-javadoc.jar
[HUDSON] Archiving 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/target/plugin-impl-3.0.0-alpha2-SNAPSHOT-sources.jar>
 to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Plugin 
impl/modules/org.cytoscape$plugin-impl/builds/2010-11-24_20-19-39/archive/org.cytoscape/plugin-impl/3.0.0-alpha2-20101125.012033-1/plugin-impl-3.0.0-alpha2-SNAPSHOT-sources.jar
[INFO] ------------------------------------------------------------------------
[ERROR] BUILD ERROR
[INFO] ------------------------------------------------------------------------
[INFO] Error deploying artifact: Failed to transfer file: 
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/plugin-impl/3.0.0-alpha2-SNAPSHOT/plugin-impl-3.0.0-alpha2-20101125.012033-1.jar.
 Return code is: 500

[INFO] ------------------------------------------------------------------------
[INFO] For more information, run Maven with the -e switch
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 52 seconds
[INFO] Finished at: Wed Nov 24 20:20:33 EST 2010
[INFO] Final Memory: 72M/725M
[INFO] ------------------------------------------------------------------------
Sending e-mails to: [email protected]
channel stopped
[trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn 
org.codehaus.sonar:sonar-maven-plugin:1.8:sonar 
-Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar 
-Dsonar.jdbc.password=deploysonar 
-Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar 
-Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true
[INFO] Scanning for projects...
WAGON_VERSION: 1.0-beta-2
[INFO] ------------------------------------------------------------------------
[INFO] Building org.cytoscape.plugin-impl
[INFO]    task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] 
(aggregator-style)
[INFO] ------------------------------------------------------------------------
[INFO] [sonar:sonar]
[INFO] Sonar host: http://localhost:8021/sonar
[INFO] Sonar version: 2.4
Downloading: 
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/parent/3.0.0-alpha4-SNAPSHOT/parent-3.0.0-alpha4-SNAPSHOT.pom
[INFO] Unable to find resource 'org.cytoscape:parent:pom:3.0.0-alpha4-SNAPSHOT' 
in repository cytoscape_snapshots 
(http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/)
Downloading: 
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/parent/3.0.0-alpha4-SNAPSHOT/parent-3.0.0-alpha4-SNAPSHOT.pom
[INFO] Unable to find resource 'org.cytoscape:parent:pom:3.0.0-alpha4-SNAPSHOT' 
in repository cytoscape_snapshots 
(http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/)
Downloading: 
http://repository.springsource.com/maven/bundles/release/org/cytoscape/parent/3.0.0-alpha4-SNAPSHOT/parent-3.0.0-alpha4-SNAPSHOT.pom
[INFO] Unable to find resource 'org.cytoscape:parent:pom:3.0.0-alpha4-SNAPSHOT' 
in repository com.springsource.repository.bundles.release 
(http://repository.springsource.com/maven/bundles/release)
Downloading: 
http://repository.springsource.com/maven/bundles/external/org/cytoscape/parent/3.0.0-alpha4-SNAPSHOT/parent-3.0.0-alpha4-SNAPSHOT.pom
[INFO] Unable to find resource 'org.cytoscape:parent:pom:3.0.0-alpha4-SNAPSHOT' 
in repository com.springsource.repository.bundles.external 
(http://repository.springsource.com/maven/bundles/external)
Downloading: 
http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/parent/3.0.0-alpha4-SNAPSHOT/parent-3.0.0-alpha4-SNAPSHOT.pom
[INFO] Unable to find resource 'org.cytoscape:parent:pom:3.0.0-alpha4-SNAPSHOT' 
in repository cytoscape_biopax_snapshot 
(http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/)
Downloading: 
http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-snapshots//org/cytoscape/parent/3.0.0-alpha4-SNAPSHOT/parent-3.0.0-alpha4-SNAPSHOT.pom
[INFO] Unable to find resource 'org.cytoscape:parent:pom:3.0.0-alpha4-SNAPSHOT' 
in repository spring-osgi-snapshots 
(http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-snapshots/)
Downloading: 
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/parent/1.0-SNAPSHOT/parent-1.0-SNAPSHOT.pom
[INFO] Unable to find resource 'org.cytoscape:parent:pom:1.0-SNAPSHOT' in 
repository cytoscape_snapshots 
(http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/)
Downloading: 
http://repository.springsource.com/maven/bundles/release/org/cytoscape/parent/1.0-SNAPSHOT/parent-1.0-SNAPSHOT.pom
[INFO] Unable to find resource 'org.cytoscape:parent:pom:1.0-SNAPSHOT' in 
repository com.springsource.repository.bundles.release 
(http://repository.springsource.com/maven/bundles/release)
Downloading: 
http://repository.springsource.com/maven/bundles/external/org/cytoscape/parent/1.0-SNAPSHOT/parent-1.0-SNAPSHOT.pom
[INFO] Unable to find resource 'org.cytoscape:parent:pom:1.0-SNAPSHOT' in 
repository com.springsource.repository.bundles.external 
(http://repository.springsource.com/maven/bundles/external)
Downloading: 
http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/parent/1.0-SNAPSHOT/parent-1.0-SNAPSHOT.pom
[INFO] Unable to find resource 'org.cytoscape:parent:pom:1.0-SNAPSHOT' in 
repository cytoscape_biopax_snapshot 
(http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/)
Downloading: 
http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-snapshots//org/cytoscape/parent/1.0-SNAPSHOT/parent-1.0-SNAPSHOT.pom
[INFO] Unable to find resource 'org.cytoscape:parent:pom:1.0-SNAPSHOT' in 
repository spring-osgi-snapshots 
(http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-snapshots/)
[INFO] [sonar-core:internal]
[INFO]  Database dialect class org.sonar.jpa.dialect.MySql
[INFO]  -------------  Analyzing org.cytoscape.plugin-impl
[INFO]  Selected quality profile : [name=Cytoscape,language=java]
[INFO]  Configure maven plugins...
[INFO]  Sensor JavaSourceImporter...
[INFO]  Sensor JavaSourceImporter done: 794 ms
[INFO]  Sensor AsynchronousMeasuresSensor...
[INFO]  Sensor AsynchronousMeasuresSensor done: 28 ms
[INFO]  Sensor SquidSensor...
[INFO]  Java AST scan...
[INFO]  Java AST scan done: 1148 ms
[INFO]  Java bytecode scan...
[INFO]  Java bytecode scan done: 739 ms
[INFO]  Squid extraction...
[INFO]  Package design analysis...
[INFO]  Package design analysis done: 88 ms
[INFO]  Squid extraction done: 1229 ms
[INFO]  Sensor SquidSensor done: 3234 ms
[INFO]  Sensor FindbugsSensor...
[INFO]  Execute Findbugs 1.3.9...
[INFO]  Findbugs output report: 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/target/sonar/findbugs-result.xml>
[INFO]  Execute Findbugs 1.3.9 done: 17189 ms
[INFO]  Sensor FindbugsSensor done: 17850 ms
[INFO]  Execute maven plugin cobertura-maven-plugin...
[INFO] ------------------------------------------------------------------------
[INFO] Building org.cytoscape.plugin-impl
[INFO]    task-segment: [org.codehaus.mojo:cobertura-maven-plugin::cobertura]
[INFO] ------------------------------------------------------------------------
[INFO] Preparing cobertura:cobertura
[INFO] [resources:resources]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 5 resources
[INFO] Copying 0 resource
[INFO] [pax:compile]
[INFO] Nothing to compile - all classes are up to date
[INFO] [cobertura:instrument]
[INFO] Cobertura 1.9.4.1 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file
Instrumenting 99 files to 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/target/generated-classes/cobertura>
Cobertura: Saved information on 99 classes.
Instrument time: 4057ms

[INFO] Instrumentation was successful.
[INFO] [resources:testResources]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/src/test/resources>
[INFO] [pax:testCompile]
[INFO] Nothing to compile - all classes are up to date
[INFO] [surefire:test]
[INFO] Surefire report directory: 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/target/surefire-reports>

-------------------------------------------------------
 T E S T S
-------------------------------------------------------
Running org.cytoscape.plugin.internal.CyPluginAdapterImplTest
Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.409 sec
Running org.cytoscape.plugin.internal.PluginLoaderTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.05 sec

Results :

Tests run: 13, Failures: 0, Errors: 0, Skipped: 0

[INFO] [cobertura:cobertura]
[INFO] Cobertura 1.9.4.1 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file
Cobertura: Loaded information on 99 classes.
Report time: 2164ms

[INFO] Cobertura Report generation was successful.
[INFO]  Execute maven plugin cobertura-maven-plugin done: 11640 ms
[INFO]  Sensor CoberturaSensor...
[INFO]  parsing 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/target/site/cobertura/coverage.xml>
[INFO]  Sensor CoberturaSensor done: 506 ms
[INFO]  Sensor CpdSensor...
[INFO]  Sensor CpdSensor done: 282 ms
[INFO]  Sensor CheckstyleSensor...
[INFO]  Execute Checkstyle 5.1...
[INFO]  Checkstyle configuration: 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/target/sonar/checkstyle.xml>
[INFO]  Execute Checkstyle 5.1 done: 2023 ms
[INFO]  Sensor CheckstyleSensor done: 2050 ms
[INFO]  Sensor PmdSensor...
[INFO]  Execute PMD 4.2.5...
[INFO]  Java version: 1.6
[INFO]  PMD configuration: 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/target/sonar/pmd.xml>
[INFO]  PMD output report: 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/target/sonar/pmd-result.xml>
[INFO]  Execute PMD 4.2.5 done: 4875 ms
[INFO]  Sensor PmdSensor done: 4997 ms
[INFO]  Sensor ProfileSensor...
[INFO]  Sensor ProfileSensor done: 25 ms
[INFO]  Sensor ProjectLinksSensor...
[INFO]  Sensor ProjectLinksSensor done: 5 ms
[INFO]  Sensor VersionEventsSensor...
[INFO]  Sensor VersionEventsSensor done: 45 ms
[INFO]  Sensor Maven dependencies...
[INFO]  Sensor Maven dependencies done: 133 ms
[INFO]  Sensor SurefireSensor...
[INFO]  parsing 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Plugin%20impl/ws/trunk/target/surefire-reports>
[INFO]  Sensor SurefireSensor done: 41 ms
[INFO]  Execute decorators...
[INFO]  ANALYSIS SUCCESSFUL, you can browse http://localhost:8021/sonar
[INFO]  Database optimization...
[INFO]  Deleting files data before Wed Nov 24 08:21:42 EST 2010
[INFO]  Deleting unprocessed data before Wed Nov 24 08:21:43 EST 2010
[INFO]  Database optimization done: 642 ms
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESSFUL
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 58 seconds
[INFO] Finished at: Wed Nov 24 20:21:43 EST 2010
[INFO] Final Memory: 94M/799M
[INFO] ------------------------------------------------------------------------

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