See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/271/>
------------------------------------------ [...truncated 23 lines...] A src/main/resources/META-INF/spring/bundle-context.xml A pom.xml U . At revision 23018 no change for http://chianti.ucsd.edu/svn/core3/session-impl/trunk since the previous build No emails were triggered. Parsing POMs [trunk] $ java -cp /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-agent-1.385.jar:/R1/tools/maven/apache-maven-2.1.0/boot/classworlds-1.1.jar hudson.maven.agent.Main /R1/tools/maven/apache-maven-2.1.0 /R1/resources/webservers/tomcat_2/webapps/hudson/WEB-INF/lib/remoting-1.385.jar /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-interceptor-1.385.jar 46244 /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven2.1-interceptor-1.2.jar <===[HUDSON REMOTING CAPACITY]===> channel started Executing Maven: -B -f <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/pom.xml> deploy [INFO] Scanning for projects... Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/parent/3.0.0-alpha4-SNAPSHOT/parent-3.0.0-alpha4-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:parent:pom:3.0.0-alpha4-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.session-impl [INFO] task-segment: [deploy] [INFO] ------------------------------------------------------------------------ [INFO] [resources:resources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] [pax:compile] [INFO] Compiling 3 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/classes> [INFO] [resources:testResources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/src/test/resources> [INFO] [pax:testCompile] [INFO] Nothing to compile - all classes are up to date [INFO] [surefire:test] [INFO] No tests to run. [HUDSON] Recording test results [INFO] [bundle:bundle] [WARNING] Warning building bundle org.cytoscape:session-impl:bundle:3.0.0-alpha2-SNAPSHOT : Instructions for Private-Package that are never used: org\.cytoscape\.session\.internal\..*|org\.cytoscape\.session\.internal [INFO] [javadoc:jar {execution: attach-javadocs}] [ERROR] Error fetching link: http://cytoscape.wodaklab.org/javadoc/package-list. Ignored it. Loading source files for package org.cytoscape.session.internal... Constructing Javadoc information... Registered Taglet org.cytoscape.taglets.compatibility.StaticClassTaglet ... Registered Taglet org.cytoscape.taglets.compatibility.ApiInterfaceTaglet ... Registered Taglet org.cytoscape.taglets.compatibility.AbstractClassTaglet ... Registered Taglet org.cytoscape.taglets.compatibility.EnumClassTaglet ... Registered Taglet org.cytoscape.taglets.compatibility.FinalClassTaglet ... Registered Taglet org.cytoscape.taglets.compatibility.SpiInterfaceTaglet ... Standard Doclet version 1.6.0_20 Building tree for all the packages and classes... Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/apidocs/org/cytoscape/session/internal//CyApplicationManagerImpl.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/apidocs/org/cytoscape/session/internal//CyNetworkNamingImpl.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/apidocs/org/cytoscape/session/internal//CySessionManagerImpl.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/apidocs/org/cytoscape/session/internal//package-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/apidocs/org/cytoscape/session/internal//package-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/apidocs/org/cytoscape/session/internal//package-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/apidocs/constant-values.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/apidocs/org/cytoscape/session/internal//class-use/CyNetworkNamingImpl.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/apidocs/org/cytoscape/session/internal//class-use/CySessionManagerImpl.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/apidocs/org/cytoscape/session/internal//class-use/CyApplicationManagerImpl.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/apidocs/org/cytoscape/session/internal//package-use.html...> Building index for all the packages and classes... Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/apidocs/overview-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/apidocs/index-all.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/apidocs/deprecated-list.html...> Building index for all classes... Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/apidocs/allclasses-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/apidocs/allclasses-noframe.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/apidocs/index.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/apidocs/help-doc.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/apidocs/stylesheet.css...> [INFO] Building jar: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/session-impl-3.0.0-alpha2-SNAPSHOT-javadoc.jar> [INFO] Preparing source:jar [WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation. [INFO] No goals needed for project - skipping [INFO] [source:jar {execution: attach-sources}] [INFO] Building jar: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/session-impl-3.0.0-alpha2-SNAPSHOT-sources.jar> [INFO] [install:install] [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/session-impl-3.0.0-alpha2-SNAPSHOT.jar> to /home/bturner/.m2/repository/org/cytoscape/session-impl/3.0.0-alpha2-SNAPSHOT/session-impl-3.0.0-alpha2-SNAPSHOT.jar [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/session-impl-3.0.0-alpha2-SNAPSHOT-javadoc.jar> to /home/bturner/.m2/repository/org/cytoscape/session-impl/3.0.0-alpha2-SNAPSHOT/session-impl-3.0.0-alpha2-SNAPSHOT-javadoc.jar [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/session-impl-3.0.0-alpha2-SNAPSHOT-sources.jar> to /home/bturner/.m2/repository/org/cytoscape/session-impl/3.0.0-alpha2-SNAPSHOT/session-impl-3.0.0-alpha2-SNAPSHOT-sources.jar [INFO] [bundle:install] [INFO] Parsing file:/home/bturner/.m2/repository/repository.xml [Fatal Error] repository.xml:3:1: Premature end of file. org.xml.sax.SAXParseException: Premature end of file. at com.sun.org.apache.xerces.internal.parsers.DOMParser.parse(DOMParser.java:249) at com.sun.org.apache.xerces.internal.jaxp.DocumentBuilderImpl.parse(DocumentBuilderImpl.java:284) at javax.xml.parsers.DocumentBuilder.parse(DocumentBuilder.java:208) at org.apache.felix.obrplugin.ObrUpdate.parseFile(ObrUpdate.java:347) at org.apache.felix.obrplugin.ObrUpdate.parseRepositoryXml(ObrUpdate.java:324) at org.apache.felix.obrplugin.ObrInstall.execute(ObrInstall.java:140) at org.apache.maven.plugin.DefaultPluginManager.executeMojo(DefaultPluginManager.java:483) at hudson.maven.agent.PluginManagerInterceptor.executeMojo(PluginManagerInterceptor.java:182) at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoals(DefaultLifecycleExecutor.java:678) at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoalWithLifecycle(DefaultLifecycleExecutor.java:540) at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoal(DefaultLifecycleExecutor.java:519) at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoalAndHandleFailures(DefaultLifecycleExecutor.java:371) at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeTaskSegments(DefaultLifecycleExecutor.java:332) at org.apache.maven.lifecycle.DefaultLifecycleExecutor.execute(DefaultLifecycleExecutor.java:181) at org.apache.maven.lifecycle.LifecycleExecutorInterceptor.execute(LifecycleExecutorInterceptor.java:65) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:356) at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:137) at org.apache.maven.cli.MavenCli.main(MavenCli.java:356) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.codehaus.classworlds.Launcher.launchEnhanced(Launcher.java:315) at org.codehaus.classworlds.Launcher.launch(Launcher.java:255) at hudson.maven.agent.Main.launch(Main.java:165) at hudson.maven.MavenBuilder.call(MavenBuilder.java:165) at hudson.maven.MavenModuleSetBuild$Builder.call(MavenModuleSetBuild.java:750) at hudson.maven.MavenModuleSetBuild$Builder.call(MavenModuleSetBuild.java:694) at hudson.remoting.UserRequest.perform(UserRequest.java:114) at hudson.remoting.UserRequest.perform(UserRequest.java:48) at hudson.remoting.Request$2.run(Request.java:270) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) at java.util.concurrent.FutureTask.run(FutureTask.java:138) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) at java.lang.Thread.run(Thread.java:619) [INFO] Writing OBR metadata [INFO] [deploy:deploy] [INFO] Retrieving previous build number from snapshots [INFO] repository metadata for: 'snapshot org.cytoscape:session-impl:3.0.0-alpha2-SNAPSHOT' could not be found on repository: snapshots, so will be created Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/session-impl/3.0.0-alpha2-SNAPSHOT/session-impl-3.0.0-alpha2-20101125.012744-1.jar [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Session Impl/modules/org.cytoscape$session-impl/builds/2010-11-24_20-27-21/archive/org.cytoscape/session-impl/3.0.0-alpha2-SNAPSHOT/pom.xml [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/session-impl-3.0.0-alpha2-SNAPSHOT.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Session Impl/modules/org.cytoscape$session-impl/builds/2010-11-24_20-27-21/archive/org.cytoscape/session-impl/3.0.0-alpha2-20101125.012744-1/session-impl-3.0.0-alpha2-SNAPSHOT.jar [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/session-impl-3.0.0-alpha2-SNAPSHOT-javadoc.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Session Impl/modules/org.cytoscape$session-impl/builds/2010-11-24_20-27-21/archive/org.cytoscape/session-impl/3.0.0-alpha2-20101125.012744-1/session-impl-3.0.0-alpha2-SNAPSHOT-javadoc.jar [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/session-impl-3.0.0-alpha2-SNAPSHOT-sources.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Session Impl/modules/org.cytoscape$session-impl/builds/2010-11-24_20-27-21/archive/org.cytoscape/session-impl/3.0.0-alpha2-20101125.012744-1/session-impl-3.0.0-alpha2-SNAPSHOT-sources.jar [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Error deploying artifact: Failed to transfer file: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/session-impl/3.0.0-alpha2-SNAPSHOT/session-impl-3.0.0-alpha2-20101125.012744-1.jar. Return code is: 500 [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 20 seconds [INFO] Finished at: Wed Nov 24 20:27:44 EST 2010 [INFO] Final Memory: 62M/725M [INFO] ------------------------------------------------------------------------ Sending e-mails to: [email protected] channel stopped [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/parent/3.0.0-alpha4-SNAPSHOT/parent-3.0.0-alpha4-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:parent:pom:3.0.0-alpha4-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.session-impl [INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar] [INFO] Sonar host: http://localhost:8021/sonar [INFO] Sonar version: 2.4 [INFO] [sonar-core:internal] [INFO] Database dialect class org.sonar.jpa.dialect.MySql [INFO] ------------- Analyzing org.cytoscape.session-impl [INFO] Selected quality profile : [name=Cytoscape,language=java] [INFO] Configure maven plugins... [INFO] Sensor JavaSourceImporter... [INFO] Sensor JavaSourceImporter done: 372 ms [INFO] Sensor AsynchronousMeasuresSensor... [INFO] Sensor AsynchronousMeasuresSensor done: 132 ms [INFO] Sensor SquidSensor... [INFO] Java AST scan... [INFO] Java AST scan done: 302 ms [INFO] Java bytecode scan... [INFO] Java bytecode scan done: 92 ms [INFO] Squid extraction... [INFO] Package design analysis... [INFO] Package design analysis done: 7 ms [INFO] Squid extraction done: 270 ms [INFO] Sensor SquidSensor done: 706 ms [INFO] Sensor FindbugsSensor... [INFO] Execute Findbugs 1.3.9... [INFO] Findbugs output report: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/sonar/findbugs-result.xml> [INFO] Execute Findbugs 1.3.9 done: 4377 ms [INFO] Sensor FindbugsSensor done: 4581 ms [INFO] Execute maven plugin cobertura-maven-plugin... [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.session-impl [INFO] task-segment: [org.codehaus.mojo:cobertura-maven-plugin::cobertura] [INFO] ------------------------------------------------------------------------ [INFO] Preparing cobertura:cobertura [INFO] [resources:resources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] [pax:compile] [INFO] Nothing to compile - all classes are up to date [INFO] [cobertura:instrument] [INFO] Cobertura 1.9.4.1 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file Instrumenting 3 files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/generated-classes/cobertura> Cobertura: Saved information on 3 classes. Instrument time: 237ms [INFO] Instrumentation was successful. [INFO] [resources:testResources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/src/test/resources> [INFO] [pax:testCompile] [INFO] Nothing to compile - all classes are up to date [INFO] [surefire:test] [INFO] No tests to run. [INFO] [cobertura:cobertura] [INFO] Cobertura 1.9.4.1 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file Cobertura: Loaded information on 3 classes. Report time: 309ms [INFO] Cobertura Report generation was successful. [INFO] Execute maven plugin cobertura-maven-plugin done: 5081 ms [INFO] Sensor CoberturaSensor... [INFO] parsing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/site/cobertura/coverage.xml> [INFO] Sensor CoberturaSensor done: 101 ms [INFO] Sensor CpdSensor... [INFO] Sensor CpdSensor done: 76 ms [INFO] Sensor CheckstyleSensor... [INFO] Execute Checkstyle 5.1... [INFO] Checkstyle configuration: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/sonar/checkstyle.xml> [INFO] Execute Checkstyle 5.1 done: 627 ms [INFO] Sensor CheckstyleSensor done: 647 ms [INFO] Sensor PmdSensor... [INFO] Execute PMD 4.2.5... [INFO] Java version: 1.6 [INFO] PMD configuration: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/sonar/pmd.xml> [INFO] PMD output report: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/sonar/pmd-result.xml> [INFO] Execute PMD 4.2.5 done: 2677 ms [INFO] Sensor PmdSensor done: 2756 ms [INFO] Sensor ProfileSensor... [INFO] Sensor ProfileSensor done: 25 ms [INFO] Sensor ProjectLinksSensor... [INFO] Sensor ProjectLinksSensor done: 20 ms [INFO] Sensor VersionEventsSensor... [INFO] Sensor VersionEventsSensor done: 46 ms [INFO] Sensor Maven dependencies... [INFO] Sensor Maven dependencies done: 208 ms [INFO] Sensor SurefireSensor... [INFO] parsing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/surefire-reports> [INFO] Sensor SurefireSensor done: 33 ms [INFO] Execute decorators... [INFO] ANALYSIS SUCCESSFUL, you can browse http://localhost:8021/sonar [INFO] Database optimization... [INFO] Deleting files data before Wed Nov 24 08:28:18 EST 2010 [INFO] Deleting unprocessed data before Wed Nov 24 08:28:18 EST 2010 [INFO] Database optimization done: 755 ms [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESSFUL [INFO] ------------------------------------------------------------------------ [INFO] Total time: 23 seconds [INFO] Finished at: Wed Nov 24 20:28:19 EST 2010 [INFO] Final Memory: 69M/736M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To post to this group, send email to [email protected]. 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