See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Commons%20CLI/629/>

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A         src/main/java/org/apache/commons/cli/package.html
A         src/main/java/org/apache/commons/cli/OptionBuilder.java
A         src/main/java/org/apache/commons/cli/PosixParser.java
A         src/main/java/org/apache/commons/cli/TypeHandler.java
A         src/main/java/org/apache/commons/cli/MissingOptionException.java
A         src/main/java/org/apache/commons/cli/OptionGroup.java
A         src/main/java/org/apache/commons/cli/CommandLine.java
A         src/main/java/org/apache/commons/cli/ParseException.java
A         src/main/java/org/apache/commons/cli/overview.html
A         src/main/java/org/apache/commons/cli/Options.java
A         src/main/java/org/apache/commons/cli/MissingArgumentException.java
A         src/main/java/org/apache/commons/cli/Parser.java
A         src/main/java/org/apache/commons/cli/BasicParser.java
A         pom.xml
 U        .
At revision 23020
no change for http://chianti.ucsd.edu/svn/core3/cy-commons-cli/trunk since the 
previous build
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Parsing POMs
[trunk] $ java -cp 
/R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-agent-1.385.jar:/R1/tools/maven/apache-maven-2.1.0/boot/classworlds-1.1.jar
 hudson.maven.agent.Main /R1/tools/maven/apache-maven-2.1.0 
/R1/resources/webservers/tomcat_2/webapps/hudson/WEB-INF/lib/remoting-1.385.jar 
/R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-interceptor-1.385.jar
 59424 
/R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven2.1-interceptor-1.2.jar
<===[HUDSON REMOTING CAPACITY]===>   channel started
Executing Maven:  -B -f 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Commons%20CLI/ws/trunk/pom.xml> 
deploy
[INFO] Scanning for projects...
WAGON_VERSION: 1.0-beta-2
[INFO] ------------------------------------------------------------------------
[INFO] Building org.cytoscape.cy-commons-cli
[INFO]    task-segment: [deploy]
[INFO] ------------------------------------------------------------------------
[INFO] [resources:resources]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Commons%20CLI/ws/trunk/src/main/resources>
[INFO] [pax:compile]
[INFO] Compiling 20 source files to 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Commons%20CLI/ws/trunk/target/classes>
[INFO] [resources:testResources]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory 
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[INFO] [pax:testCompile]
[INFO] Compiling 15 source files to 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Commons%20CLI/ws/trunk/target/test-classes>
[INFO] [surefire:test]
[INFO] Surefire report directory: 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Commons%20CLI/ws/trunk/target/surefire-reports>

-------------------------------------------------------
 T E S T S
-------------------------------------------------------
Running org.apache.commons.cli.OptionGroupTest
Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.04 sec
Running org.apache.commons.cli.TestHelpFormatter
Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 sec
Running org.apache.commons.cli.ValuesTest
Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.013 sec
Running org.apache.commons.cli.OptionsTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 sec
Running org.apache.commons.cli.ValueTest
Tests run: 16, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.016 sec
Running org.apache.commons.cli.PatternOptionBuilderTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 5.183 sec
Running org.apache.commons.cli.OptionBuilderTest
Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 sec
Running org.apache.commons.cli.ParseTest
Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.013 sec
Running org.apache.commons.cli.ArgumentIsOptionTest
Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 sec
Running org.apache.commons.cli.BuildTest
Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.013 sec
Running org.apache.commons.cli.ApplicationTest
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.014 sec
Running org.apache.commons.cli.GnuParseTest
Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.011 sec
Running org.apache.commons.cli.ParseRequiredTest
Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec

Results :

Tests run: 77, Failures: 0, Errors: 0, Skipped: 0

[HUDSON] Recording test results
[INFO] [bundle:bundle]
[WARNING] Warning building bundle 
org.cytoscape:cy-commons-cli:bundle:1.0-SNAPSHOT : Instructions for 
Private-Package that are never used: 
org\.apache\.internal\..*|org\.apache\.internal
[INFO] [javadoc:jar {execution: attach-javadocs}]
[ERROR] Error fetching link: 
http://cytoscape.wodaklab.org/javadoc/package-list. Ignored it.
[INFO] snapshot org.cytoscape:taglets:1.0-SNAPSHOT: checking for updates from 
cytoscape_snapshots
[INFO] snapshot org.cytoscape:taglets:1.0-SNAPSHOT: checking for updates from 
cytoscape_biopax_snapshot
[INFO] snapshot org.cytoscape:taglets:1.0-SNAPSHOT: checking for updates from 
spring-osgi
[INFO] snapshot org.cytoscape:taglets:1.0-SNAPSHOT: checking for updates from 
spring-osgi-snapshots
Loading source files for package org.apache.commons.cli...
Constructing Javadoc information...
Registered Taglet org.cytoscape.taglets.compatibility.StaticClassTaglet ...
Registered Taglet org.cytoscape.taglets.compatibility.ApiInterfaceTaglet ...
Registered Taglet org.cytoscape.taglets.compatibility.AbstractClassTaglet ...
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Registered Taglet org.cytoscape.taglets.compatibility.FinalClassTaglet ...
Registered Taglet org.cytoscape.taglets.compatibility.SpiInterfaceTaglet ...
Standard Doclet version 1.6.0_20
Building tree for all the packages and classes...
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[INFO] Building jar: 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Commons%20CLI/ws/trunk/target/cy-commons-cli-1.0-SNAPSHOT-javadoc.jar>
[INFO] Preparing source:jar
[WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation.
[INFO] No goals needed for project - skipping
[INFO] [source:jar {execution: attach-sources}]
[INFO] Building jar: 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Commons%20CLI/ws/trunk/target/cy-commons-cli-1.0-SNAPSHOT-sources.jar>
[INFO] [install:install]
[INFO] Installing 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Commons%20CLI/ws/trunk/target/cy-commons-cli-1.0-SNAPSHOT.jar>
 to 
/home/bturner/.m2/repository/org/cytoscape/cy-commons-cli/1.0-SNAPSHOT/cy-commons-cli-1.0-SNAPSHOT.jar
[INFO] Installing 
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[INFO] Installing 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Commons%20CLI/ws/trunk/target/cy-commons-cli-1.0-SNAPSHOT-sources.jar>
 to 
/home/bturner/.m2/repository/org/cytoscape/cy-commons-cli/1.0-SNAPSHOT/cy-commons-cli-1.0-SNAPSHOT-sources.jar
[INFO] [bundle:install]
[INFO] Parsing file:/home/bturner/.m2/repository/repository.xml
[Fatal Error] repository.xml:3:1: Premature end of file.
org.xml.sax.SAXParseException: Premature end of file.
        at 
com.sun.org.apache.xerces.internal.parsers.DOMParser.parse(DOMParser.java:249)
        at 
com.sun.org.apache.xerces.internal.jaxp.DocumentBuilderImpl.parse(DocumentBuilderImpl.java:284)
        at javax.xml.parsers.DocumentBuilder.parse(DocumentBuilder.java:208)
        at org.apache.felix.obrplugin.ObrUpdate.parseFile(ObrUpdate.java:347)
        at 
org.apache.felix.obrplugin.ObrUpdate.parseRepositoryXml(ObrUpdate.java:324)
        at org.apache.felix.obrplugin.ObrInstall.execute(ObrInstall.java:140)
        at 
org.apache.maven.plugin.DefaultPluginManager.executeMojo(DefaultPluginManager.java:483)
        at 
hudson.maven.agent.PluginManagerInterceptor.executeMojo(PluginManagerInterceptor.java:182)
        at 
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoals(DefaultLifecycleExecutor.java:678)
        at 
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoalWithLifecycle(DefaultLifecycleExecutor.java:540)
        at 
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoal(DefaultLifecycleExecutor.java:519)
        at 
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoalAndHandleFailures(DefaultLifecycleExecutor.java:371)
        at 
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeTaskSegments(DefaultLifecycleExecutor.java:332)
        at 
org.apache.maven.lifecycle.DefaultLifecycleExecutor.execute(DefaultLifecycleExecutor.java:181)
        at 
org.apache.maven.lifecycle.LifecycleExecutorInterceptor.execute(LifecycleExecutorInterceptor.java:65)
        at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:356)
        at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:137)
        at org.apache.maven.cli.MavenCli.main(MavenCli.java:356)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at 
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
        at 
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
        at java.lang.reflect.Method.invoke(Method.java:597)
        at org.codehaus.classworlds.Launcher.launchEnhanced(Launcher.java:315)
        at org.codehaus.classworlds.Launcher.launch(Launcher.java:255)
        at hudson.maven.agent.Main.launch(Main.java:165)
        at hudson.maven.MavenBuilder.call(MavenBuilder.java:165)
        at 
hudson.maven.MavenModuleSetBuild$Builder.call(MavenModuleSetBuild.java:750)
        at 
hudson.maven.MavenModuleSetBuild$Builder.call(MavenModuleSetBuild.java:694)
        at hudson.remoting.UserRequest.perform(UserRequest.java:114)
        at hudson.remoting.UserRequest.perform(UserRequest.java:48)
        at hudson.remoting.Request$2.run(Request.java:270)
        at 
java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441)
        at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
        at java.util.concurrent.FutureTask.run(FutureTask.java:138)
        at 
java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
        at 
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
        at java.lang.Thread.run(Thread.java:619)
[INFO] Writing OBR metadata
[INFO] [deploy:deploy]
[INFO] Retrieving previous build number from snapshots
Uploading: 
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/cy-commons-cli/1.0-SNAPSHOT/cy-commons-cli-1.0-20101129.010240-581.jar
32K uploaded  (cy-commons-cli-1.0-20101129.010240-581.jar)
[INFO] Retrieving previous metadata from snapshots
[INFO] Uploading repository metadata for: 'snapshot 
org.cytoscape:cy-commons-cli:1.0-SNAPSHOT'
[INFO] Retrieving previous metadata from snapshots
[INFO] Uploading repository metadata for: 'artifact 
org.cytoscape:cy-commons-cli'
[INFO] Uploading project information for cy-commons-cli 1.0-20101129.010240-581
[INFO] Retrieving previous build number from snapshots
Uploading: 
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/cy-commons-cli/1.0-SNAPSHOT/cy-commons-cli-1.0-20101129.010240-581-javadoc.jar
126K uploaded  (cy-commons-cli-1.0-20101129.010240-581-javadoc.jar)
[INFO] Retrieving previous build number from snapshots
Uploading: 
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/cy-commons-cli/1.0-SNAPSHOT/cy-commons-cli-1.0-20101129.010240-581-sources.jar
36K uploaded  (cy-commons-cli-1.0-20101129.010240-581-sources.jar)
[INFO] [bundle:deploy]
[INFO] Remote OBR update disabled (enable with -DremoteOBR)
[HUDSON] Archiving 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Commons%20CLI/ws/trunk/pom.xml> 
to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Commons 
CLI/modules/org.cytoscape$cy-commons-cli/builds/2010-11-28_20-02-00/archive/org.cytoscape/cy-commons-cli/1.0-SNAPSHOT/pom.xml
[HUDSON] Archiving 
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 to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Commons 
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[HUDSON] Archiving 
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 to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Commons 
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[HUDSON] Archiving 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Commons%20CLI/ws/trunk/target/cy-commons-cli-1.0-SNAPSHOT-sources.jar>
 to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Commons 
CLI/modules/org.cytoscape$cy-commons-cli/builds/2010-11-28_20-02-00/archive/org.cytoscape/cy-commons-cli/1.0-20101129.010240-581/cy-commons-cli-1.0-SNAPSHOT-sources.jar
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESSFUL
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 41 seconds
[INFO] Finished at: Sun Nov 28 20:02:43 EST 2010
[INFO] Final Memory: 65M/727M
[INFO] ------------------------------------------------------------------------
channel stopped
[trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn 
org.codehaus.sonar:sonar-maven-plugin:1.8:sonar 
-Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar 
-Dsonar.jdbc.password=deploysonar 
-Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar 
-Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true
[INFO] Scanning for projects...
WAGON_VERSION: 1.0-beta-2
[INFO] ------------------------------------------------------------------------
[INFO] Building org.cytoscape.cy-commons-cli
[INFO]    task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] 
(aggregator-style)
[INFO] ------------------------------------------------------------------------
[INFO] [sonar:sonar]
[INFO] Sonar host: http://localhost:8021/sonar
[INFO] ------------------------------------------------------------------------
[ERROR] BUILD ERROR
[INFO] ------------------------------------------------------------------------
[INFO] Sonar server can not be reached at http://localhost:8021/sonar. Please 
check the parameter 'sonar.host.url'.
[INFO] ------------------------------------------------------------------------
[INFO] For more information, run Maven with the -e switch
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 1 second
[INFO] Finished at: Sun Nov 28 20:02:47 EST 2010
[INFO] Final Memory: 11M/213M
[INFO] ------------------------------------------------------------------------

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