See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/1233/changes>
Changes: [ruschein] Added some new unit tests and fixed a bug. ------------------------------------------ Started by an SCM change Checking out http://chianti.ucsd.edu/svn/core3/model-impl/trunk A impl A impl/osgi.bnd A impl/src A impl/src/test A impl/src/test/java A impl/src/test/java/org A impl/src/test/java/org/cytoscape A impl/src/test/java/org/cytoscape/model A impl/src/test/java/org/cytoscape/model/IdentifiableTest.java A impl/src/test/java/org/cytoscape/model/CyEdgeTest.java A impl/src/test/java/org/cytoscape/model/CyNodeTest.java A impl/src/test/java/org/cytoscape/model/CyTableTest.java A impl/src/test/java/org/cytoscape/model/subnetwork A impl/src/test/java/org/cytoscape/model/subnetwork/CyRootNetworkCyNetworkTest.java A impl/src/test/java/org/cytoscape/model/subnetwork/CySubNetworkTest.java A impl/src/test/java/org/cytoscape/model/subnetwork/CySubNetworkCyNetworkTest.java A impl/src/test/java/org/cytoscape/model/subnetwork/CyRootNetworkTest.java A impl/src/test/java/org/cytoscape/model/CyNetworkTest.java A impl/src/test/java/org/cytoscape/model/GraphObjectTest.java A impl/src/test/java/org/cytoscape/model/TestCyNetworkFactory.java A impl/src/test/java/org/cytoscape/model/CyTableManagerTest.java A impl/src/main A impl/src/main/java A impl/src/main/java/org A impl/src/main/java/org/cytoscape A impl/src/main/java/org/cytoscape/model A impl/src/main/java/org/cytoscape/model/internal A impl/src/main/java/org/cytoscape/model/internal/AttribTopoGraphNode.java A impl/src/main/java/org/cytoscape/model/internal/CyNetworkFactoryImpl.java A impl/src/main/java/org/cytoscape/model/internal/ArrayGraph.java A impl/src/main/java/org/cytoscape/model/internal/CyTableManagerImpl.java A impl/src/main/java/org/cytoscape/model/internal/CyEdgeImpl.java A impl/src/main/java/org/cytoscape/model/internal/CyNetworkManagerImpl.java A impl/src/main/java/org/cytoscape/model/internal/CyNodeImpl.java A impl/src/main/java/org/cytoscape/model/internal/CyRootNetworkFactoryImpl.java A impl/src/main/java/org/cytoscape/model/internal/CyTableImpl.java A impl/src/main/java/org/cytoscape/model/internal/EdgePointer.java A impl/src/main/java/org/cytoscape/model/internal/NodePointer.java A impl/src/main/java/org/cytoscape/model/internal/CyTableEntryImpl.java A impl/src/main/java/org/cytoscape/model/internal/ArraySubGraph.java A impl/src/main/java/org/cytoscape/model/internal/CyTableFactoryImpl.java A impl/src/main/javadoc A impl/src/main/javadoc/org A impl/src/main/javadoc/org/cytoscape A impl/src/main/javadoc/org/cytoscape/model A impl/src/main/javadoc/org/cytoscape/model/subnetwork A impl/src/main/javadoc/org/cytoscape/model/subnetwork/package.html A impl/src/main/javadoc/org/cytoscape/model/events A impl/src/main/javadoc/org/cytoscape/model/events/package.html A impl/src/main/javadoc/org/cytoscape/model/package.html A impl/src/main/resources A impl/src/main/resources/META-INF A impl/src/main/resources/META-INF/spring A impl/src/main/resources/META-INF/spring/bundle-context-osgi.xml A impl/src/main/resources/META-INF/spring/bundle-context.xml A impl/src/main/resources/readme.txt A impl/pom.xml A pom.xml A it A it/src A it/src/test A it/src/test/java A it/src/test/java/org A it/src/test/java/org/cytoscape A it/src/test/java/org/cytoscape/model A it/src/test/java/org/cytoscape/model/ServiceConfigurationTest.java A it/pom.xml U . At revision 23052 No emails were triggered. Parsing POMs [trunk] $ java -cp /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-agent-1.385.jar:/R1/tools/maven/apache-maven-2.1.0/boot/classworlds-1.1.jar hudson.maven.agent.Main /R1/tools/maven/apache-maven-2.1.0 /R1/resources/webservers/tomcat_2/webapps/hudson/WEB-INF/lib/remoting-1.385.jar /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-interceptor-1.385.jar 40396 /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven2.1-interceptor-1.2.jar <===[HUDSON REMOTING CAPACITY]===> channel started Executing Maven: -B -f <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/pom.xml> deploy [INFO] Scanning for projects... [INFO] Reactor build order: [INFO] model-impl-parent [INFO] org.cytoscape.model-impl [INFO] org.cytoscape.model-impl-it WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building model-impl-parent [INFO] task-segment: [deploy] [INFO] ------------------------------------------------------------------------ [INFO] [site:attach-descriptor] Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/topo-sort/1.0-SNAPSHOT/topo-sort-1.0-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:topo-sort:pom:1.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/topo-sort/1.0-SNAPSHOT/topo-sort-1.0-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:topo-sort:pom:1.0-SNAPSHOT' in repository cytoscape_biopax_snapshot (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi//org/cytoscape/topo-sort/1.0-SNAPSHOT/topo-sort-1.0-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:topo-sort:pom:1.0-SNAPSHOT' in repository spring-osgi (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external//org/cytoscape/topo-sort/1.0-SNAPSHOT/topo-sort-1.0-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:topo-sort:pom:1.0-SNAPSHOT' in repository spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/topo-sort/1.0-SNAPSHOT/topo-sort-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:topo-sort:jar:1.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/topo-sort/1.0-SNAPSHOT/topo-sort-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:topo-sort:jar:1.0-SNAPSHOT' in repository cytoscape_biopax_snapshot (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi//org/cytoscape/topo-sort/1.0-SNAPSHOT/topo-sort-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:topo-sort:jar:1.0-SNAPSHOT' in repository spring-osgi (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external//org/cytoscape/topo-sort/1.0-SNAPSHOT/topo-sort-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:topo-sort:jar:1.0-SNAPSHOT' in repository spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external/) [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Model impl/modules/org.cytoscape$model-impl-parent/builds/2010-11-30_13-01-51/archive/org.cytoscape/model-impl-parent/3.0.0-alpha2-SNAPSHOT/pom.xml [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Failed to resolve artifact. Missing: ---------- 1) org.cytoscape:topo-sort:jar:1.0-SNAPSHOT Try downloading the file manually from the project website. Then, install it using the command: mvn install:install-file -DgroupId=org.cytoscape -DartifactId=topo-sort -Dversion=1.0-SNAPSHOT -Dpackaging=jar -Dfile=/path/to/file Alternatively, if you host your own repository you can deploy the file there: mvn deploy:deploy-file -DgroupId=org.cytoscape -DartifactId=topo-sort -Dversion=1.0-SNAPSHOT -Dpackaging=jar -Dfile=/path/to/file -Durl=[url] -DrepositoryId=[id] Path to dependency: 1) org.cytoscape:model-impl-parent:pom:3.0.0-alpha2-SNAPSHOT 2) org.cytoscape:topo-sort:jar:1.0-SNAPSHOT ---------- 1 required artifact is missing. for artifact: org.cytoscape:model-impl-parent:pom:3.0.0-alpha2-SNAPSHOT from the specified remote repositories: cytoscape_releases (http://cytoscape.wodaklab.org/nexus/content/repositories/releases/), cytoscape_biopax_release (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-release/), cytoscape_biopax_snapshot (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/), cytoscape_thirdparty (http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty/), ops4j-release (http://cytoscape.wodaklab.org/nexus/content/repositories/ops4j-release/), cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/), spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external/), Nexus (http://cytoscape.wodaklab.org/nexus/content/groups/public), spring-osgi (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi/) [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 4 seconds [INFO] Finished at: Tue Nov 30 13:01:57 EST 2010 [INFO] Final Memory: 31M/338M [INFO] ------------------------------------------------------------------------ channel stopped [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... [INFO] Reactor build order: [INFO] model-impl-parent [INFO] org.cytoscape.model-impl [INFO] org.cytoscape.model-impl-it WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building model-impl-parent [INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar] [INFO] Sonar host: http://localhost:8021/sonar [INFO] Sonar version: 2.4 Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/topo-sort/1.0-SNAPSHOT/topo-sort-1.0-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:topo-sort:pom:1.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/topo-sort/1.0-SNAPSHOT/topo-sort-1.0-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:topo-sort:pom:1.0-SNAPSHOT' in repository cytoscape_biopax_snapshot (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi//org/cytoscape/topo-sort/1.0-SNAPSHOT/topo-sort-1.0-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:topo-sort:pom:1.0-SNAPSHOT' in repository spring-osgi (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external//org/cytoscape/topo-sort/1.0-SNAPSHOT/topo-sort-1.0-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:topo-sort:pom:1.0-SNAPSHOT' in repository spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/topo-sort/1.0-SNAPSHOT/topo-sort-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:topo-sort:jar:1.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/topo-sort/1.0-SNAPSHOT/topo-sort-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:topo-sort:jar:1.0-SNAPSHOT' in repository cytoscape_biopax_snapshot (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi//org/cytoscape/topo-sort/1.0-SNAPSHOT/topo-sort-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:topo-sort:jar:1.0-SNAPSHOT' in repository spring-osgi (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external//org/cytoscape/topo-sort/1.0-SNAPSHOT/topo-sort-1.0-SNAPSHOT.jar [INFO] Unable to find resource 'org.cytoscape:topo-sort:jar:1.0-SNAPSHOT' in repository spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external/) [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Can not execute Sonar Embedded error: Missing: ---------- 1) org.cytoscape:topo-sort:jar:1.0-SNAPSHOT Try downloading the file manually from the project website. Then, install it using the command: mvn install:install-file -DgroupId=org.cytoscape -DartifactId=topo-sort -Dversion=1.0-SNAPSHOT -Dpackaging=jar -Dfile=/path/to/file Alternatively, if you host your own repository you can deploy the file there: mvn deploy:deploy-file -DgroupId=org.cytoscape -DartifactId=topo-sort -Dversion=1.0-SNAPSHOT -Dpackaging=jar -Dfile=/path/to/file -Durl=[url] -DrepositoryId=[id] Path to dependency: 1) org.cytoscape:model-impl-parent:pom:3.0.0-alpha2-SNAPSHOT 2) org.cytoscape:topo-sort:jar:1.0-SNAPSHOT ---------- 1 required artifact is missing. for artifact: org.cytoscape:model-impl-parent:pom:3.0.0-alpha2-SNAPSHOT from the specified remote repositories: cytoscape_releases (http://cytoscape.wodaklab.org/nexus/content/repositories/releases/), cytoscape_biopax_release (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-release/), sonar (http://localhost:8021/sonar/deploy/maven), cytoscape_biopax_snapshot (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/), cytoscape_thirdparty (http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty/), ops4j-release (http://cytoscape.wodaklab.org/nexus/content/repositories/ops4j-release/), cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/), spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external/), Nexus (http://cytoscape.wodaklab.org/nexus/content/groups/public), spring-osgi (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi/) [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 1 second [INFO] Finished at: Tue Nov 30 13:01:59 EST 2010 [INFO] Final Memory: 14M/218M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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