Author: pwang
Date: 2010-12-02 12:40:08 -0800 (Thu, 02 Dec 2010)
New Revision: 23073
Added:
csplugins/trunk/ucsd/pwang/sandbox/osgi.bnd
csplugins/trunk/ucsd/pwang/sandbox/pom.xml
csplugins/trunk/ucsd/pwang/sandbox/src/
csplugins/trunk/ucsd/pwang/sandbox/src/main/
csplugins/trunk/ucsd/pwang/sandbox/src/main/java/
csplugins/trunk/ucsd/pwang/sandbox/src/main/java/org/
csplugins/trunk/ucsd/pwang/sandbox/src/main/java/org/cytoscape/
csplugins/trunk/ucsd/pwang/sandbox/src/main/java/org/cytoscape/sandbox/
csplugins/trunk/ucsd/pwang/sandbox/src/main/java/org/cytoscape/sandbox/internal/
csplugins/trunk/ucsd/pwang/sandbox/src/main/java/org/cytoscape/sandbox/internal/SandboxTask.java
csplugins/trunk/ucsd/pwang/sandbox/src/main/java/org/cytoscape/sandbox/internal/SandboxTaskFactory.java
Log:
Original creation
Added: csplugins/trunk/ucsd/pwang/sandbox/osgi.bnd
===================================================================
--- csplugins/trunk/ucsd/pwang/sandbox/osgi.bnd (rev 0)
+++ csplugins/trunk/ucsd/pwang/sandbox/osgi.bnd 2010-12-02 20:40:08 UTC (rev
23073)
@@ -0,0 +1,6 @@
+#-----------------------------------------------------------------
+# Use this file to add customized Bnd instructions for the bundle
+#-----------------------------------------------------------------
+
+Import-Package: *
+Private-Package: ${bundle.namespace}.internal.*
Added: csplugins/trunk/ucsd/pwang/sandbox/pom.xml
===================================================================
--- csplugins/trunk/ucsd/pwang/sandbox/pom.xml (rev 0)
+++ csplugins/trunk/ucsd/pwang/sandbox/pom.xml 2010-12-02 20:40:08 UTC (rev
23073)
@@ -0,0 +1,151 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project xmlns="http://maven.apache.org/POM/4.0.0";
+ xsi:schemaLocation="http://maven.apache.org/POM/4.0.0
http://maven.apache.org/maven-v4_0_0.xsd";
+ xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance";>
+
+ <properties>
+ <bundle.symbolicName>org.cytoscape.sandbox</bundle.symbolicName>
+ <bundle.namespace>org.cytoscape.sandbox</bundle.namespace>
+ </properties>
+
+ <parent>
+ <artifactId>parent</artifactId>
+ <groupId>org.cytoscape</groupId>
+ <version>3.0.0-alpha3</version>
+ </parent>
+ <modelVersion>4.0.0</modelVersion>
+ <groupId>org.cytoscape</groupId>
+ <artifactId>sandbox</artifactId>
+ <version>0.1-SNAPSHOT</version>
+
+ <name>${bundle.symbolicName} [${bundle.namespace}]</name>
+
+ <packaging>bundle</packaging>
+
+ <build>
+ <!-- Cytoscape requires Java 1.6 -->
+ <plugins>
+ <plugin>
+ <groupId>org.ops4j</groupId>
+ <artifactId>maven-pax-plugin</artifactId>
+ <version>1.4</version>
+ <extensions>true</extensions>
+ </plugin>
+ <!-- Generates the OSGi metadata based on the osgi.bnd
file. -->
+ <plugin>
+ <groupId>org.apache.felix</groupId>
+ <artifactId>maven-bundle-plugin</artifactId>
+ <version>1.4.3</version>
+ <configuration>
+ <instructions>
+
<Bundle-SymbolicName>${bundle.symbolicName}</Bundle-SymbolicName>
+
<Bundle-Version>${pom.version}</Bundle-Version>
+ <_include>-osgi.bnd</_include>
+ </instructions>
+ </configuration>
+ </plugin>
+ </plugins>
+ </build>
+
+ <!-- Links to the Cytoscape Maven repositories. -->
+ <repositories>
+ <repository>
+ <id>cytoscape_snapshots</id>
+ <snapshots>
+ <enabled>true</enabled>
+ </snapshots>
+ <releases>
+ <enabled>false</enabled>
+ </releases>
+ <name>Cytoscape Snapshots</name>
+
<url>http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/</url>
+ </repository>
+ <repository>
+ <id>cytoscape_releases</id>
+ <snapshots>
+ <enabled>false</enabled>
+ </snapshots>
+ <releases>
+ <enabled>true</enabled>
+ </releases>
+ <name>Cytoscape Releases</name>
+
<url>http://cytoscape.wodaklab.org/nexus/content/repositories/releases/</url>
+ </repository>
+ <repository>
+ <id>cytoscape_thirdparty</id>
+ <snapshots>
+ <enabled>false</enabled>
+ </snapshots>
+ <releases>
+ <enabled>true</enabled>
+ </releases>
+ <name>Cytoscape Third Party</name>
+
<url>http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty/</url>
+ </repository>
+ </repositories>
+
+ <!-- Dependencies needed to compile this project. -->
+ <dependencies>
+ <dependency>
+ <groupId>org.cytoscape</groupId>
+ <artifactId>model-api</artifactId>
+ <version>3.0.0-alpha2-SNAPSHOT</version>
+ </dependency>
+ <dependency>
+ <groupId>org.cytoscape</groupId>
+ <artifactId>viewmodel-api</artifactId>
+ <version>3.0.0-alpha3-SNAPSHOT</version>
+ </dependency>
+ <dependency>
+ <groupId>org.cytoscape</groupId>
+ <artifactId>core-task-api</artifactId>
+ <version>3.0.0-alpha2-SNAPSHOT</version>
+ </dependency>
+ <dependency>
+ <groupId>org.cytoscape</groupId>
+ <artifactId>session-api</artifactId>
+ <version>3.0.0-alpha1</version>
+ </dependency>
+
+ <dependency>
+ <groupId>org.cytoscape</groupId>
+ <artifactId>io-api</artifactId>
+ <version>3.0.0-alpha2-SNAPSHOT</version>
+ </dependency>
+
+ <dependency>
+ <groupId>org.cytoscape</groupId>
+ <artifactId>core-task-api</artifactId>
+ <version>3.0.0-alpha2-SNAPSHOT</version>
+ </dependency>
+
+ <dependency>
+ <groupId>org.cytoscape</groupId>
+ <artifactId>swing-application-api</artifactId>
+ <version>1.0-SNAPSHOT</version>
+ </dependency>
+
+ <dependency>
+ <groupId>org.cytoscape</groupId>
+ <artifactId>work-swing-api</artifactId>
+ <version>1.0-SNAPSHOT</version>
+ </dependency>
+
+
+
+ <!-- dependencies specifically for unit testing -->
+ <dependency>
+ <groupId>junit</groupId>
+ <artifactId>junit</artifactId>
+ <version>4.4</version>
+ <scope>test</scope>
+ </dependency>
+ <dependency>
+ <groupId>org.cytoscape</groupId>
+ <artifactId>test-support</artifactId>
+ <version>1.0-SNAPSHOT</version>
+ <scope>test</scope>
+ </dependency>
+ </dependencies>
+
+</project>
Added:
csplugins/trunk/ucsd/pwang/sandbox/src/main/java/org/cytoscape/sandbox/internal/SandboxTask.java
===================================================================
---
csplugins/trunk/ucsd/pwang/sandbox/src/main/java/org/cytoscape/sandbox/internal/SandboxTask.java
(rev 0)
+++
csplugins/trunk/ucsd/pwang/sandbox/src/main/java/org/cytoscape/sandbox/internal/SandboxTask.java
2010-12-02 20:40:08 UTC (rev 23073)
@@ -0,0 +1,44 @@
+package org.cytoscape.sandbox.internal;
+
+
+import org.cytoscape.application.swing.CySwingApplication;
+import javax.swing.JButton;
+import org.cytoscape.model.CyNetworkManager;
+import org.cytoscape.model.CyTableManager;
+import org.cytoscape.work.AbstractTask;
+import org.cytoscape.work.TaskMonitor;
+import org.cytoscape.work.swing.GUITaskManager;
+import org.cytoscape.session.CyApplicationManager;
+
+public class SandboxTask extends AbstractTask {
+
+ private CySwingApplication desktopApp;
+ private CyApplicationManager appMgr;
+ private CyNetworkManager netMgr;
+ private CyTableManager tableMgr;
+ private GUITaskManager taskMgr;
+
+ public SandboxTask(CySwingApplication desktopApp, CyApplicationManager
appMgr, CyNetworkManager netMgr,
+ CyTableManager tableMgr, GUITaskManager taskMgr) {
+
+ this.desktopApp = desktopApp;
+ this.appMgr = appMgr;
+ this.netMgr = netMgr;
+ this.tableMgr = tableMgr;
+ this.taskMgr = taskMgr;
+
+ }
+
+
+ /**
+ * This method processes the chosen input file and output type and
attempts
+ * to write the file.
+ * @param tm The {...@link org.cytoscape.work.TaskMonitor} provided by
the TaskManager execution environment.
+ */
+ public final void run(TaskMonitor tm) throws Exception {
+
+
+ System.out.println("Executing sandbox Task ....");
+ }
+
+}
Added:
csplugins/trunk/ucsd/pwang/sandbox/src/main/java/org/cytoscape/sandbox/internal/SandboxTaskFactory.java
===================================================================
---
csplugins/trunk/ucsd/pwang/sandbox/src/main/java/org/cytoscape/sandbox/internal/SandboxTaskFactory.java
(rev 0)
+++
csplugins/trunk/ucsd/pwang/sandbox/src/main/java/org/cytoscape/sandbox/internal/SandboxTaskFactory.java
2010-12-02 20:40:08 UTC (rev 23073)
@@ -0,0 +1,50 @@
+package org.cytoscape.sandbox.internal;
+
+import javax.swing.JButton;
+import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
+
+import org.cytoscape.work.TaskIterator;
+import org.cytoscape.work.swing.GUITaskManager;
+import org.cytoscape.application.swing.CySwingApplication;
+import org.cytoscape.model.CyTableManager;
+import org.cytoscape.session.CyApplicationManager;
+import org.cytoscape.model.CyNetworkManager;
+import org.cytoscape.work.TaskFactory;
+
+public class SandboxTaskFactory implements TaskFactory {
+
+ private CySwingApplication desktopApp;
+ private CyApplicationManager appMgr;
+ private CyNetworkManager netMgr;
+ private CyTableManager tableMgr;
+ private GUITaskManager taskMgr;
+
+ public SandboxTaskFactory(CySwingApplication desktopApp,
CyApplicationManager appMgr,
+ CyNetworkManager netMgr, CyTableManager tableMgr,
GUITaskManager taskMgr){
+
+ this.desktopApp = desktopApp;
+ this.appMgr = appMgr;
+ this.netMgr = netMgr;
+ this.tableMgr = tableMgr;
+ this.taskMgr = taskMgr;
+
+ // Add a button on tool-bar with position index = 5
+ JButton btn = new JButton("Sandbox");
+ btn.addActionListener(new SanboxActionListener());
+ this.desktopApp.getJToolBar().add(btn,5);
+ }
+
+
+ public TaskIterator getTaskIterator() {
+ return new TaskIterator(new SandboxTask(desktopApp, appMgr,
netMgr,tableMgr, taskMgr));
+ }
+
+ /////
+ class SanboxActionListener implements ActionListener {
+
+ public void actionPerformed(ActionEvent e){
+ System.out.println("\nSandbox button is clicked!");
+ }
+ }
+}
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