See
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/1727/>
------------------------------------------
[...truncated 645 lines...]
at java.lang.reflect.Method.invoke(Method.java:597)
at org.codehaus.classworlds.Launcher.launchEnhanced(Launcher.java:315)
at org.codehaus.classworlds.Launcher.launch(Launcher.java:255)
at hudson.maven.agent.Main.launch(Main.java:165)
at hudson.maven.MavenBuilder.call(MavenBuilder.java:165)
at
hudson.maven.MavenModuleSetBuild$Builder.call(MavenModuleSetBuild.java:750)
at
hudson.maven.MavenModuleSetBuild$Builder.call(MavenModuleSetBuild.java:694)
at hudson.remoting.UserRequest.perform(UserRequest.java:114)
at hudson.remoting.UserRequest.perform(UserRequest.java:48)
at hudson.remoting.Request$2.run(Request.java:270)
at
java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
at java.util.concurrent.FutureTask.run(FutureTask.java:138)
at
java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
at java.lang.Thread.run(Thread.java:619)
Caused by: org.xmlpull.v1.XmlPullParserException: unexpected type
(position:END_DOCUMENT n...@3:1 in java.io.inputstreamrea...@6c46efab)
at org.kxml2.io.KXmlParser.exception(Unknown Source)
at org.kxml2.io.KXmlParser.nextTag(Unknown Source)
at
org.apache.felix.bundlerepository.impl.PullParser.parseRepository(PullParser.java:43)
at
org.apache.felix.bundlerepository.impl.DataModelHelperImpl.repository(DataModelHelperImpl.java:147)
at
org.apache.felix.bundlerepository.impl.DataModelHelperImpl.repository(DataModelHelperImpl.java:118)
at
org.apache.felix.obrplugin.ObrUpdate.parseRepositoryXml(ObrUpdate.java:291)
... 32 more
[INFO] [deploy:deploy]
[INFO] Retrieving previous build number from snapshots
[HUDSON] Archiving
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/pom.xml>
to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Core Task
Implementation/modules/org.cytoscape$core-task-impl/builds/2010-12-04_20-02-44/archive/org.cytoscape/core-task-impl/1.0-SNAPSHOT/pom.xml
[HUDSON] Archiving
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/target/core-task-impl-1.0-SNAPSHOT.jar>
to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Core Task
Implementation/modules/org.cytoscape$core-task-impl/builds/2010-12-04_20-02-44/archive/org.cytoscape/core-task-impl/1.0-SNAPSHOT/core-task-impl-1.0-SNAPSHOT.jar
[HUDSON] Archiving
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/target/core-task-impl-1.0-SNAPSHOT-javadoc.jar>
to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Core Task
Implementation/modules/org.cytoscape$core-task-impl/builds/2010-12-04_20-02-44/archive/org.cytoscape/core-task-impl/1.0-SNAPSHOT/core-task-impl-1.0-SNAPSHOT-javadoc.jar
[HUDSON] Archiving
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/target/core-task-impl-1.0-SNAPSHOT-sources.jar>
to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Core Task
Implementation/modules/org.cytoscape$core-task-impl/builds/2010-12-04_20-02-44/archive/org.cytoscape/core-task-impl/1.0-SNAPSHOT/core-task-impl-1.0-SNAPSHOT-sources.jar
[INFO] ------------------------------------------------------------------------
[ERROR] BUILD ERROR
[INFO] ------------------------------------------------------------------------
[INFO] Error retrieving previous build number for artifact
'org.cytoscape:core-task-impl:bundle': repository metadata for: 'snapshot
org.cytoscape:core-task-impl:1.0-SNAPSHOT' could not be retrieved from
repository: snapshots due to an error: Authorization failed: Access denied to:
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/core-task-impl/1.0-SNAPSHOT/maven-metadata.xml
[INFO] ------------------------------------------------------------------------
[INFO] For more information, run Maven with the -e switch
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 46 seconds
[INFO] Finished at: Sat Dec 04 20:03:33 EST 2010
[INFO] Final Memory: 67M/722M
[INFO] ------------------------------------------------------------------------
Sending e-mails to: [email protected]
channel stopped
[trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn
org.codehaus.sonar:sonar-maven-plugin:1.8:sonar
-Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar
-Dsonar.jdbc.password=deploysonar
-Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar
-Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true
[INFO] Scanning for projects...
[INFO] snapshot org.cytoscape:parent:1.0-SNAPSHOT: checking for updates from
cytoscape_snapshots
[WARNING] repository metadata for: 'snapshot org.cytoscape:parent:1.0-SNAPSHOT'
could not be retrieved from repository: cytoscape_snapshots due to an error:
Authorization failed: Access denied to:
http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/parent/1.0-SNAPSHOT/maven-metadata.xml
[INFO] Repository 'cytoscape_snapshots' will be blacklisted
WAGON_VERSION: 1.0-beta-2
[INFO] ------------------------------------------------------------------------
[INFO] Building org.cytoscape.core-task-impl
[INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar]
(aggregator-style)
[INFO] ------------------------------------------------------------------------
[INFO] [sonar:sonar]
[INFO] Sonar host: http://localhost:8021/sonar
[INFO] Sonar version: 2.4
[INFO] snapshot org.cytoscape:io-api:3.0.0-alpha2-SNAPSHOT: checking for
updates from cytoscape_biopax_snapshot
[WARNING] repository metadata for: 'snapshot
org.cytoscape:io-api:3.0.0-alpha2-SNAPSHOT' could not be retrieved from
repository: cytoscape_biopax_snapshot due to an error: Authorization failed:
Access denied to:
http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/org/cytoscape/io-api/3.0.0-alpha2-SNAPSHOT/maven-metadata.xml
[INFO] Repository 'cytoscape_biopax_snapshot' will be blacklisted
[INFO] [sonar-core:internal]
[INFO] Database dialect class org.sonar.jpa.dialect.MySql
[INFO] ------------- Analyzing org.cytoscape.core-task-impl
[INFO] Selected quality profile : [name=Cytoscape,language=java]
[INFO] Configure maven plugins...
[INFO] Sensor JavaSourceImporter...
[INFO] Sensor JavaSourceImporter done: 822 ms
[INFO] Sensor AsynchronousMeasuresSensor...
[INFO] Sensor AsynchronousMeasuresSensor done: 22 ms
[INFO] Sensor SquidSensor...
[INFO] Java AST scan...
[INFO] Java AST scan done: 679 ms
[INFO] Java bytecode scan...
[INFO] Java bytecode scan done: 171 ms
[INFO] Squid extraction...
[INFO] Package design analysis...
[INFO] Package design analysis done: 13 ms
[INFO] Squid extraction done: 1623 ms
[INFO] Sensor SquidSensor done: 2600 ms
[INFO] Sensor FindbugsSensor...
[INFO] Execute Findbugs 1.3.9...
[INFO] Findbugs output report:
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/target/sonar/findbugs-result.xml>
[INFO] Execute Findbugs 1.3.9 done: 9006 ms
[INFO] Sensor FindbugsSensor done: 9197 ms
[INFO] Execute maven plugin cobertura-maven-plugin...
[INFO] ------------------------------------------------------------------------
[INFO] Building org.cytoscape.core-task-impl
[INFO] task-segment: [org.codehaus.mojo:cobertura-maven-plugin::cobertura]
[INFO] ------------------------------------------------------------------------
[INFO] Preparing cobertura:cobertura
[INFO] [resources:resources]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 2 resources
[INFO] Copying 0 resource
[INFO] [pax:compile]
[INFO] Nothing to compile - all classes are up to date
[INFO] [cobertura:instrument]
[INFO] Cobertura 1.9.4.1 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file
Instrumenting 105 files to
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/target/generated-classes/cobertura>
Cobertura: Saved information on 105 classes.
Instrument time: 9465ms
[INFO] Instrumentation was successful.
[INFO] [resources:testResources]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 3 resources
[INFO] [pax:testCompile]
[INFO] Nothing to compile - all classes are up to date
[INFO] [surefire:test]
[INFO] Surefire report directory:
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/target/surefire-reports>
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Running org.cytoscape.task.internal.session.SaveSessionAsTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.168 sec
Running org.cytoscape.task.internal.zoom.ZoomOutTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.957 sec
Running org.cytoscape.task.internal.zoom.FitSelectedTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.1 sec
Running org.cytoscape.task.internal.zoom.ZoomOutTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.086 sec
Running org.cytoscape.task.internal.select.AllFactoryTest
Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.056 sec
Running org.cytoscape.task.internal.zoom.ZoomInTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.129 sec
Running org.cytoscape.task.internal.setcurren.SetCurrentNetworkTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.072 sec
Running org.cytoscape.task.internal.select.InvertSelectedNodesTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.037 sec
Running org.cytoscape.task.internal.proxysettings.ProxySettingsTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.097 sec
Running org.cytoscape.task.internal.select.SelectAdjacentEdgesTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.087 sec
Running org.cytoscape.task.internal.select.DeselectAllEdgesTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.087 sec
Running org.cytoscape.task.internal.session.NewSessionTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.041 sec
Running org.cytoscape.task.internal.select.SelectAllTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.349 sec
Running org.cytoscape.task.internal.hide.HideSelectedNodesTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.058 sec
Running org.cytoscape.task.internal.select.DeselectAllTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.087 sec
Running org.cytoscape.task.internal.zoom.FitSelectedTaskTest
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.092 sec
Running org.cytoscape.task.internal.session.SaveSessionTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.033 sec
Running org.cytoscape.task.internal.title.EditNetworkTitleTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.075 sec
Running org.cytoscape.task.internal.select.SelectConnectedNodesTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.067 sec
Running
org.cytoscape.task.internal.loaddatatable.LoadDataTableTaskFactoryImplTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.075 sec
Running org.cytoscape.task.internal.select.InvertSelectedEdgesTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.091 sec
Running org.cytoscape.task.internal.loadnetwork.LoadNetworkURLTaskTest
Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 5.231 sec
Running org.cytoscape.task.internal.session.NewSessionTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.075 sec
Running org.cytoscape.task.internal.zoom.FitContentTaskTest
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.083 sec
Running org.cytoscape.task.internal.select.SelectFromFileListTaskTest
Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.096 sec
Running org.cytoscape.task.internal.select.SelectFirstNeighborsNodeViewTaskTest
Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.058 sec
Running org.cytoscape.task.internal.hide.HideSelectedEdgesTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.075 sec
Running org.cytoscape.task.internal.zoom.FitContentTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.062 sec
Running org.cytoscape.task.internal.select.SelectFirstNeighborsTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.066 sec
Running
org.cytoscape.task.internal.setcurren.SetCurrentNetworkTaskFactoryImplTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.075 sec
Running org.cytoscape.task.internal.zoom.ZoomInTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.071 sec
Running org.cytoscape.task.internal.hide.UnHideAllNodesTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.038 sec
Running org.cytoscape.task.internal.select.DeselectAllNodesTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.062 sec
Running org.cytoscape.task.internal.select.SelectAllEdgesTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.062 sec
Running org.cytoscape.task.internal.loadnetwork.LoadNetworkFileTaskTest
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.108 sec
Running org.cytoscape.task.internal.title.EditNetworkTitleTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.07 sec
Running org.cytoscape.task.internal.hide.UnHideAllTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.066 sec
Running org.cytoscape.task.internal.session.OpenSessionTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.084 sec
Running org.cytoscape.task.internal.select.SelectAllNodesTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.093 sec
Running org.cytoscape.task.internal.hide.HideSelectedTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.062 sec
Running org.cytoscape.task.internal.hide.UnHideAllEdgesTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.055 sec
Results :
Tests run: 63, Failures: 0, Errors: 0, Skipped: 0
[INFO] [cobertura:cobertura]
[INFO] Cobertura 1.9.4.1 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file
Cobertura: Loaded information on 105 classes.
Report time: 633ms
[INFO] Cobertura Report generation was successful.
[INFO] Execute maven plugin cobertura-maven-plugin done: 24164 ms
[INFO] Sensor CoberturaSensor...
[INFO] parsing
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/target/site/cobertura/coverage.xml>
[INFO] Sensor CoberturaSensor done: 547 ms
[INFO] Sensor CpdSensor...
[INFO] Sensor CpdSensor done: 365 ms
[INFO] Sensor CheckstyleSensor...
[INFO] Execute Checkstyle 5.1...
[INFO] Checkstyle configuration:
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/target/sonar/checkstyle.xml>
[INFO] Execute Checkstyle 5.1 done: 1514 ms
[INFO] Sensor CheckstyleSensor done: 1544 ms
[INFO] Sensor PmdSensor...
[INFO] Execute PMD 4.2.5...
[INFO] Java version: 1.6
[INFO] PMD configuration:
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/target/sonar/pmd.xml>
[INFO] PMD output report:
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/target/sonar/pmd-result.xml>
[INFO] Execute PMD 4.2.5 done: 5046 ms
[INFO] Sensor PmdSensor done: 5146 ms
[INFO] Sensor ProfileSensor...
[INFO] Sensor ProfileSensor done: 25 ms
[INFO] Sensor ProjectLinksSensor...
[INFO] Sensor ProjectLinksSensor done: 6 ms
[INFO] Sensor VersionEventsSensor...
[INFO] Sensor VersionEventsSensor done: 36 ms
[INFO] Sensor Maven dependencies...
[INFO] Sensor Maven dependencies done: 149 ms
[INFO] Sensor SurefireSensor...
[INFO] parsing
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/target/surefire-reports>
[INFO] Sensor SurefireSensor done: 165 ms
[INFO] Execute decorators...
[INFO] ANALYSIS SUCCESSFUL, you can browse http://localhost:8021/sonar
[INFO] Database optimization...
[INFO] Deleting files data before Sat Dec 04 08:04:38 EST 2010
[INFO] Deleting unprocessed data before Sat Dec 04 08:04:39 EST 2010
[INFO] Database optimization done: 1477 ms
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESSFUL
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 1 minute
[INFO] Finished at: Sat Dec 04 20:04:39 EST 2010
[INFO] Final Memory: 72M/712M
[INFO] ------------------------------------------------------------------------
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