See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/1190/>
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Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/ws/trunk/target/apidocs/overview-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/ws/trunk/target/apidocs/index-all.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/ws/trunk/target/apidocs/deprecated-list.html...> Building index for all classes... Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/ws/trunk/target/apidocs/allclasses-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/ws/trunk/target/apidocs/allclasses-noframe.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/ws/trunk/target/apidocs/index.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/ws/trunk/target/apidocs/overview-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/ws/trunk/target/apidocs/help-doc.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/ws/trunk/target/apidocs/stylesheet.css...> 16 warnings [WARNING] Javadoc Warnings [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/ws/trunk/src/main/java/org/cytoscape/work/internal/tunables/BooleanCLHandler.java>:54: warning - @param argument "commandline" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/ws/trunk/src/main/java/org/cytoscape/work/internal/tunables/BoundedCLHandler.java>:81: warning - @param argument "commandline" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/ws/trunk/src/main/java/org/cytoscape/work/internal/tunables/CLHandlerFactory.java>:42: warning - @param argument "tg" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/ws/trunk/src/main/java/org/cytoscape/work/internal/tunables/CLHandlerFactory.java>:42: warning - @param argument "ts" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/ws/trunk/src/main/java/org/cytoscape/work/internal/tunables/CLTunableInterceptor.java>:83: warning - @param argument "an" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/ws/trunk/src/main/java/org/cytoscape/work/internal/tunables/DoubleCLHandler.java>:53: warning - @param argument "commandline" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/ws/trunk/src/main/java/org/cytoscape/work/internal/tunables/FileCLHandler.java>:55: warning - @param argument "commandline" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/ws/trunk/src/main/java/org/cytoscape/work/internal/tunables/FloatCLHandler.java>:55: warning - @param argument "commandline" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/ws/trunk/src/main/java/org/cytoscape/work/internal/tunables/InputStreamCLHandler.java>:70: warning - @param argument "commandline" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/ws/trunk/src/main/java/org/cytoscape/work/internal/tunables/IntCLHandler.java>:54: warning - @param argument "commandline" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/ws/trunk/src/main/java/org/cytoscape/work/internal/tunables/ListMultipleSelectionCLHandler.java>:140: warning - @return tag has no arguments. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/ws/trunk/src/main/java/org/cytoscape/work/internal/tunables/ListMultipleSelectionCLHandler.java>:57: warning - @param argument "commandline" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/ws/trunk/src/main/java/org/cytoscape/work/internal/tunables/ListSingleSelectionCLHandler.java>:58: warning - @param argument "commandline" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/ws/trunk/src/main/java/org/cytoscape/work/internal/tunables/LongCLHandler.java>:53: warning - @param argument "commandline" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/ws/trunk/src/main/java/org/cytoscape/work/internal/tunables/StringCLHandler.java>:53: warning - @param argument "commandline" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/ws/trunk/src/main/java/org/cytoscape/work/internal/tunables/URLCLHandler.java>:67: warning - @param argument "commandline" is not a parameter name. [INFO] Building jar: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/ws/trunk/target/work-headless-impl-1.0-SNAPSHOT-javadoc.jar> [INFO] Preparing source:jar [WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation. [INFO] No goals needed for project - skipping [INFO] [source:jar {execution: attach-sources}] [INFO] Building jar: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/ws/trunk/target/work-headless-impl-1.0-SNAPSHOT-sources.jar> [INFO] [install:install] [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/ws/trunk/target/work-headless-impl-1.0-SNAPSHOT.jar> to /home/bturner/.m2/repository/org/cytoscape/work-headless-impl/1.0-SNAPSHOT/work-headless-impl-1.0-SNAPSHOT.jar [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/ws/trunk/target/work-headless-impl-1.0-SNAPSHOT-javadoc.jar> to /home/bturner/.m2/repository/org/cytoscape/work-headless-impl/1.0-SNAPSHOT/work-headless-impl-1.0-SNAPSHOT-javadoc.jar [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/ws/trunk/target/work-headless-impl-1.0-SNAPSHOT-sources.jar> to /home/bturner/.m2/repository/org/cytoscape/work-headless-impl/1.0-SNAPSHOT/work-headless-impl-1.0-SNAPSHOT-sources.jar [INFO] [bundle:install] [INFO] Parsing file:/home/bturner/.m2/repository/repository.xml [Fatal Error] repository.xml:3:1: Premature end of file. org.xml.sax.SAXParseException: Premature end of file. at com.sun.org.apache.xerces.internal.parsers.DOMParser.parse(DOMParser.java:249) at com.sun.org.apache.xerces.internal.jaxp.DocumentBuilderImpl.parse(DocumentBuilderImpl.java:284) at javax.xml.parsers.DocumentBuilder.parse(DocumentBuilder.java:208) at org.apache.felix.obrplugin.ObrUpdate.parseFile(ObrUpdate.java:347) at org.apache.felix.obrplugin.ObrUpdate.parseRepositoryXml(ObrUpdate.java:324) at org.apache.felix.obrplugin.ObrInstall.execute(ObrInstall.java:140) at org.apache.maven.plugin.DefaultPluginManager.executeMojo(DefaultPluginManager.java:483) at hudson.maven.agent.PluginManagerInterceptor.executeMojo(PluginManagerInterceptor.java:182) at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoals(DefaultLifecycleExecutor.java:678) at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoalWithLifecycle(DefaultLifecycleExecutor.java:540) at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoal(DefaultLifecycleExecutor.java:519) at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoalAndHandleFailures(DefaultLifecycleExecutor.java:371) at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeTaskSegments(DefaultLifecycleExecutor.java:332) at org.apache.maven.lifecycle.DefaultLifecycleExecutor.execute(DefaultLifecycleExecutor.java:181) at org.apache.maven.lifecycle.LifecycleExecutorInterceptor.execute(LifecycleExecutorInterceptor.java:65) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:356) at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:137) at org.apache.maven.cli.MavenCli.main(MavenCli.java:356) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.codehaus.classworlds.Launcher.launchEnhanced(Launcher.java:315) at org.codehaus.classworlds.Launcher.launch(Launcher.java:255) at hudson.maven.agent.Main.launch(Main.java:165) at hudson.maven.MavenBuilder.call(MavenBuilder.java:165) at hudson.maven.MavenModuleSetBuild$Builder.call(MavenModuleSetBuild.java:750) at hudson.maven.MavenModuleSetBuild$Builder.call(MavenModuleSetBuild.java:694) at hudson.remoting.UserRequest.perform(UserRequest.java:114) at hudson.remoting.UserRequest.perform(UserRequest.java:48) at hudson.remoting.Request$2.run(Request.java:270) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) at java.util.concurrent.FutureTask.run(FutureTask.java:138) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) at java.lang.Thread.run(Thread.java:619) [INFO] Writing OBR metadata [INFO] [deploy:deploy] [INFO] Retrieving previous build number from snapshots [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Work Headless Implementation/modules/org.cytoscape$work-headless-impl/builds/2010-12-04_20-37-08/archive/org.cytoscape/work-headless-impl/1.0-SNAPSHOT/pom.xml [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/ws/trunk/target/work-headless-impl-1.0-SNAPSHOT.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Work Headless Implementation/modules/org.cytoscape$work-headless-impl/builds/2010-12-04_20-37-08/archive/org.cytoscape/work-headless-impl/1.0-SNAPSHOT/work-headless-impl-1.0-SNAPSHOT.jar [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/ws/trunk/target/work-headless-impl-1.0-SNAPSHOT-javadoc.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Work Headless Implementation/modules/org.cytoscape$work-headless-impl/builds/2010-12-04_20-37-08/archive/org.cytoscape/work-headless-impl/1.0-SNAPSHOT/work-headless-impl-1.0-SNAPSHOT-javadoc.jar [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/ws/trunk/target/work-headless-impl-1.0-SNAPSHOT-sources.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Work Headless Implementation/modules/org.cytoscape$work-headless-impl/builds/2010-12-04_20-37-08/archive/org.cytoscape/work-headless-impl/1.0-SNAPSHOT/work-headless-impl-1.0-SNAPSHOT-sources.jar [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Error retrieving previous build number for artifact 'org.cytoscape:work-headless-impl:bundle': repository metadata for: 'snapshot org.cytoscape:work-headless-impl:1.0-SNAPSHOT' could not be retrieved from repository: snapshots due to an error: Authorization failed: Access denied to: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/work-headless-impl/1.0-SNAPSHOT/maven-metadata.xml [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 33 seconds [INFO] Finished at: Sat Dec 04 20:37:44 EST 2010 [INFO] Final Memory: 62M/728M [INFO] ------------------------------------------------------------------------ Sending e-mails to: [email protected] channel stopped [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... [INFO] snapshot org.cytoscape:parent:1.0-SNAPSHOT: checking for updates from cytoscape_snapshots [WARNING] repository metadata for: 'snapshot org.cytoscape:parent:1.0-SNAPSHOT' could not be retrieved from repository: cytoscape_snapshots due to an error: Authorization failed: Access denied to: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/parent/1.0-SNAPSHOT/maven-metadata.xml [INFO] Repository 'cytoscape_snapshots' will be blacklisted WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.work-headless-impl [INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar] [INFO] Sonar host: http://localhost:8021/sonar [INFO] Sonar version: 2.4 [INFO] snapshot org.cytoscape:work-api:1.0-SNAPSHOT: checking for updates from cytoscape_biopax_snapshot [WARNING] repository metadata for: 'snapshot org.cytoscape:work-api:1.0-SNAPSHOT' could not be retrieved from repository: cytoscape_biopax_snapshot due to an error: Authorization failed: Access denied to: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/org/cytoscape/work-api/1.0-SNAPSHOT/maven-metadata.xml [INFO] Repository 'cytoscape_biopax_snapshot' will be blacklisted [INFO] [sonar-core:internal] [INFO] Database dialect class org.sonar.jpa.dialect.MySql [INFO] ------------- Analyzing org.cytoscape.work-headless-impl [INFO] Selected quality profile : [name=Cytoscape,language=java] [INFO] Configure maven plugins... [INFO] Sensor JavaSourceImporter... [INFO] Sensor JavaSourceImporter done: 657 ms [INFO] Sensor AsynchronousMeasuresSensor... [INFO] Sensor AsynchronousMeasuresSensor done: 27 ms [INFO] Sensor SquidSensor... [INFO] Java AST scan... [INFO] Java AST scan done: 565 ms [INFO] Java bytecode scan... [INFO] Java bytecode scan done: 153 ms [INFO] Squid extraction... [INFO] Package design analysis... [INFO] Package design analysis done: 19 ms [INFO] Squid extraction done: 469 ms [INFO] Sensor SquidSensor done: 1275 ms [INFO] Sensor FindbugsSensor... [INFO] Execute Findbugs 1.3.9... [INFO] Findbugs output report: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/ws/trunk/target/sonar/findbugs-result.xml> The following classes needed for analysis were missing: java.lang.annotation.Annotation java.lang.Enum javax.swing.event.UndoableEditListener javax.swing.JPanel java.lang.StringBuilder javax.swing.undo.UndoableEditSupport java.util.LinkedHashMap javax.swing.undo.UndoManager java.rmi.Remote [INFO] Execute Findbugs 1.3.9 done: 6733 ms [INFO] Sensor FindbugsSensor done: 7147 ms [INFO] Execute maven plugin cobertura-maven-plugin... [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.work-headless-impl [INFO] task-segment: [org.codehaus.mojo:cobertura-maven-plugin::cobertura] [INFO] ------------------------------------------------------------------------ [INFO] Preparing cobertura:cobertura [INFO] [resources:resources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] Copying 0 resource [INFO] [pax:compile] [INFO] Nothing to compile - all classes are up to date [INFO] [cobertura:instrument] [INFO] Cobertura 1.9.4.1 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file Instrumenting 21 files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/ws/trunk/target/generated-classes/cobertura> Cobertura: Saved information on 21 classes. Instrument time: 783ms [INFO] Instrumentation was successful. [INFO] [resources:testResources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/ws/trunk/src/test/resources> [INFO] [pax:testCompile] [INFO] No sources to compile [INFO] [surefire:test] [INFO] No tests to run. [INFO] [cobertura:cobertura] [INFO] Cobertura 1.9.4.1 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file Cobertura: Loaded information on 21 classes. Report time: 388ms [INFO] Cobertura Report generation was successful. [INFO] Execute maven plugin cobertura-maven-plugin done: 4968 ms [INFO] Sensor CoberturaSensor... [INFO] parsing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/ws/trunk/target/site/cobertura/coverage.xml> [INFO] Sensor CoberturaSensor done: 178 ms [INFO] Sensor CpdSensor... [INFO] Sensor CpdSensor done: 390 ms [INFO] Sensor CheckstyleSensor... [INFO] Execute Checkstyle 5.1... [INFO] Checkstyle configuration: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/ws/trunk/target/sonar/checkstyle.xml> [INFO] Execute Checkstyle 5.1 done: 737 ms [INFO] Sensor CheckstyleSensor done: 764 ms [INFO] Sensor PmdSensor... [INFO] Execute PMD 4.2.5... [INFO] Java version: 1.6 [INFO] PMD configuration: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/ws/trunk/target/sonar/pmd.xml> [INFO] PMD output report: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/ws/trunk/target/sonar/pmd-result.xml> [INFO] Execute PMD 4.2.5 done: 2532 ms [INFO] Sensor PmdSensor done: 2623 ms [INFO] Sensor ProfileSensor... [INFO] Sensor ProfileSensor done: 24 ms [INFO] Sensor ProjectLinksSensor... [INFO] Sensor ProjectLinksSensor done: 4 ms [INFO] Sensor VersionEventsSensor... [INFO] Sensor VersionEventsSensor done: 30 ms [INFO] Sensor Maven dependencies... [INFO] Sensor Maven dependencies done: 149 ms [INFO] Sensor SurefireSensor... [INFO] parsing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Work%20Headless%20Implementation/ws/trunk/target/surefire-reports> [INFO] Sensor SurefireSensor done: 24 ms [INFO] Execute decorators... [INFO] ANALYSIS SUCCESSFUL, you can browse http://localhost:8021/sonar [INFO] Database optimization... [INFO] Deleting files data before Sat Dec 04 08:38:18 EST 2010 [INFO] Deleting unprocessed data before Sat Dec 04 08:38:18 EST 2010 [INFO] Database optimization done: 824 ms [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESSFUL [INFO] ------------------------------------------------------------------------ [INFO] Total time: 28 seconds [INFO] Finished at: Sat Dec 04 20:38:19 EST 2010 [INFO] Final Memory: 71M/760M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/cytoscape-cvs?hl=en.
