See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/304/changes>
Changes: [Christian Lopes] Initial implementation for session management (needs refactoring/cleanup). Ported code that creates Cysession objects from version 2.8. ------------------------------------------ Started by an SCM change Checking out http://chianti.ucsd.edu/svn/core3/session-impl/trunk A osgi.bnd A src A src/test A src/test/java A src/test/java/org A src/test/java/org/cytoscape A src/test/java/org/cytoscape/session A src/test/java/org/cytoscape/session/internal A src/main A src/main/java A src/main/java/org A src/main/java/org/cytoscape A src/main/java/org/cytoscape/session A src/main/java/org/cytoscape/session/internal A src/main/java/org/cytoscape/session/internal/CyNetworkNamingImpl.java A src/main/java/org/cytoscape/session/internal/CysessionFactory.java A src/main/java/org/cytoscape/session/internal/CyApplicationManagerImpl.java A src/main/java/org/cytoscape/session/internal/CySessionManagerImpl.java A src/main/resources A src/main/resources/META-INF A src/main/resources/META-INF/spring A src/main/resources/META-INF/spring/bundle-context-osgi.xml A src/main/resources/META-INF/spring/bundle-context.xml A pom.xml U . At revision 23107 No emails were triggered. Parsing POMs [INFO ] snapshot org.cytoscape:parent:3.0.0-alpha4-SNAPSHOT: checking for updates from cytoscape_snapshots [trunk] $ java -cp /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-agent-1.385.jar:/R1/tools/maven/apache-maven-2.1.0/boot/classworlds-1.1.jar hudson.maven.agent.Main /R1/tools/maven/apache-maven-2.1.0 /R1/resources/webservers/tomcat_2/webapps/hudson/WEB-INF/lib/remoting-1.385.jar /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-interceptor-1.385.jar 40541 /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven2.1-interceptor-1.2.jar <===[HUDSON REMOTING CAPACITY]===> channel started Executing Maven: -B -f <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/pom.xml> deploy [INFO] Scanning for projects... Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/parent/3.0.0-alpha4-SNAPSHOT/parent-3.0.0-alpha4-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:parent:pom:3.0.0-alpha4-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.session-impl [INFO] task-segment: [deploy] [INFO] ------------------------------------------------------------------------ [INFO] [resources:resources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] snapshot org.cytoscape:session-api:3.0.0-alpha2-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.cytoscape:session-api:3.0.0-alpha2-SNAPSHOT: checking for updates from cytoscape_biopax_snapshot [INFO] snapshot org.cytoscape:session-api:3.0.0-alpha2-SNAPSHOT: checking for updates from spring-osgi [INFO] snapshot org.cytoscape:session-api:3.0.0-alpha2-SNAPSHOT: checking for updates from spring-osgi-snapshots [INFO] snapshot org.cytoscape:viewmodel-api:3.0.0-alpha3-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.cytoscape:viewmodel-api:3.0.0-alpha3-SNAPSHOT: checking for updates from spring-osgi [INFO] snapshot org.cytoscape:viewmodel-api:3.0.0-alpha3-SNAPSHOT: checking for updates from spring-osgi-snapshots [INFO] snapshot org.cytoscape:model-api:3.0.0-alpha2-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.cytoscape:model-api:3.0.0-alpha2-SNAPSHOT: checking for updates from cytoscape_biopax_snapshot [INFO] snapshot org.cytoscape:model-api:3.0.0-alpha2-SNAPSHOT: checking for updates from spring-osgi [INFO] snapshot org.cytoscape:model-api:3.0.0-alpha2-SNAPSHOT: checking for updates from spring-osgi-snapshots [INFO] snapshot org.cytoscape:event-api:3.0.0-alpha2-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.cytoscape:event-api:3.0.0-alpha2-SNAPSHOT: checking for updates from cytoscape_biopax_snapshot [INFO] snapshot org.cytoscape:event-api:3.0.0-alpha2-SNAPSHOT: checking for updates from spring-osgi [INFO] snapshot org.cytoscape:event-api:3.0.0-alpha2-SNAPSHOT: checking for updates from spring-osgi-snapshots [INFO] snapshot org.cytoscape:presentation-api:3.0.0-alpha2-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.cytoscape:presentation-api:3.0.0-alpha2-SNAPSHOT: checking for updates from spring-osgi-snapshots [INFO] snapshot org.cytoscape:property-api:3.0.0-alpha2-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.cytoscape:property-api:3.0.0-alpha2-SNAPSHOT: checking for updates from cytoscape_biopax_snapshot [INFO] snapshot org.cytoscape:property-api:3.0.0-alpha2-SNAPSHOT: checking for updates from spring-osgi [INFO] snapshot org.cytoscape:property-api:3.0.0-alpha2-SNAPSHOT: checking for updates from spring-osgi-snapshots [INFO] [pax:compile] [INFO] Compiling 4 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/classes> [INFO] [recovering meta-data] [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Session Impl/modules/org.cytoscape$session-impl/builds/2010-12-07_13-01-01/archive/org.cytoscape/session-impl/3.0.0-alpha2-SNAPSHOT/pom.xml [INFO] ------------------------------------------------------------------------ [ERROR] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Compilation failure <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/src/main/java/org/cytoscape/session/internal/CySessionManagerImpl.java>:[113,65] cannot find symbol symbol : method getDesktop() location: class org.cytoscape.session.events.SessionAboutToBeSavedEvent <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/src/main/java/org/cytoscape/session/internal/CySessionManagerImpl.java>:[113,91] cannot find symbol symbol : method getCytopanels() location: class org.cytoscape.session.events.SessionAboutToBeSavedEvent [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 11 seconds [INFO] Finished at: Tue Dec 07 13:01:15 EST 2010 [INFO] Final Memory: 50M/601M [INFO] ------------------------------------------------------------------------ Waiting for Hudson to finish collecting data Sending e-mails to: [email protected] channel stopped [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/parent/3.0.0-alpha4-SNAPSHOT/parent-3.0.0-alpha4-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:parent:pom:3.0.0-alpha4-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.session-impl [INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar] [INFO] Sonar host: http://localhost:8021/sonar [INFO] Sonar version: 2.4 Downloading: http://localhost:8021/sonar/deploy/maven/org/codehaus/sonar/runtime/sonar-core-maven-plugin/20101207010108/sonar-core-maven-plugin-20101207010108.pom 1863/512b 512b downloaded (sonar-core-maven-plugin-20101207010108.pom) Downloading: http://localhost:8021/sonar/deploy/maven/org/codehaus/sonar/runtime/sonar-core-maven-plugin/20101207010108/sonar-core-maven-plugin-20101207010108.jar 0/6K 1/6K 1/6K 2/6K 2/6K 3/6K 4/6K 4/6K 5/6K 5/6K 6/6K 6/6K 7/6K 8/6K 6K downloaded (sonar-core-maven-plugin-20101207010108.jar) [INFO] [sonar-core:internal] [INFO] Database dialect class org.sonar.jpa.dialect.MySql [INFO] ------------- Analyzing org.cytoscape.session-impl [INFO] Selected quality profile : [name=Cytoscape,language=java] [INFO] Configure maven plugins... [INFO] Sensor JavaSourceImporter... [INFO] Sensor JavaSourceImporter done: 385 ms [INFO] Sensor AsynchronousMeasuresSensor... [INFO] Sensor AsynchronousMeasuresSensor done: 88 ms [INFO] Sensor SquidSensor... [INFO] Java AST scan... [INFO] Java AST scan done: 406 ms [INFO] Java bytecode scan... [WARN] Class 'org/cytoscape/session/internal/CySessionManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/session/internal/CyNetworkNamingImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/session/internal/CysessionFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/session/internal/CySessionManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/session/internal/CyNetworkNamingImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/session/internal/CysessionFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/session/internal/CySessionManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/session/internal/CyNetworkNamingImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/session/internal/CysessionFactory' is not accessible through the ClassLoader. [INFO] Java bytecode scan done: 89 ms [INFO] Squid extraction... [INFO] Package design analysis... [INFO] Package design analysis done: 7 ms [INFO] Squid extraction done: 283 ms [INFO] Sensor SquidSensor done: 823 ms [INFO] Sensor FindbugsSensor... [INFO] Execute Findbugs 1.3.9... [INFO] Findbugs output report: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/sonar/findbugs-result.xml> [INFO] Execute Findbugs 1.3.9 done: 4041 ms [INFO] Sensor FindbugsSensor done: 4233 ms [INFO] Execute maven plugin cobertura-maven-plugin... [INFO] artifact org.codehaus.mojo:cobertura-maven-plugin: checking for updates from maven2-repository.dev.java.net [INFO] artifact org.codehaus.mojo:cobertura-maven-plugin: checking for updates from maven-repository.dev.java.net [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.session-impl [INFO] task-segment: [org.codehaus.mojo:cobertura-maven-plugin::cobertura] [INFO] ------------------------------------------------------------------------ [INFO] Preparing cobertura:cobertura [INFO] [resources:resources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] [pax:compile] [INFO] Compiling 3 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/classes> [INFO] [cobertura:instrument] [INFO] Cobertura 1.9.4.1 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file Instrumenting 4 files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/generated-classes/cobertura> Cobertura: Saved information on 4 classes. Instrument time: 251ms [INFO] Instrumentation was successful. [INFO] [resources:testResources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/src/test/resources> [INFO] [pax:testCompile] [INFO] Nothing to compile - all classes are up to date [INFO] [surefire:test] [INFO] No tests to run. [INFO] [cobertura:cobertura] [INFO] Cobertura 1.9.4.1 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file Cobertura: Loaded information on 4 classes. Report time: 284ms [INFO] Cobertura Report generation was successful. [INFO] Execute maven plugin cobertura-maven-plugin done: 10484 ms [INFO] Sensor CoberturaSensor... [INFO] parsing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/site/cobertura/coverage.xml> [INFO] Sensor CoberturaSensor done: 99 ms [INFO] Sensor CpdSensor... [INFO] Sensor CpdSensor done: 77 ms [INFO] Sensor CheckstyleSensor... [INFO] Execute Checkstyle 5.1... [INFO] Checkstyle configuration: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/sonar/checkstyle.xml> [INFO] Execute Checkstyle 5.1 done: 800 ms [INFO] Sensor CheckstyleSensor done: 828 ms [INFO] Sensor PmdSensor... [INFO] Execute PMD 4.2.5... [INFO] Java version: 1.6 [INFO] PMD configuration: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/sonar/pmd.xml> [INFO] PMD output report: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/sonar/pmd-result.xml> [INFO] Execute PMD 4.2.5 done: 2702 ms [INFO] Sensor PmdSensor done: 2764 ms [INFO] Sensor ProfileSensor... [INFO] Sensor ProfileSensor done: 25 ms [INFO] Sensor ProjectLinksSensor... [INFO] Sensor ProjectLinksSensor done: 12 ms [INFO] Sensor VersionEventsSensor... [INFO] Sensor VersionEventsSensor done: 54 ms [INFO] Sensor Maven dependencies... [INFO] Sensor Maven dependencies done: 373 ms [INFO] Sensor SurefireSensor... [INFO] parsing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Session%20Impl/ws/trunk/target/surefire-reports> [INFO] Sensor SurefireSensor done: 33 ms [INFO] Execute decorators... [INFO] ANALYSIS SUCCESSFUL, you can browse http://localhost:8021/sonar [INFO] Database optimization... [INFO] Deleting files data before Tue Dec 07 01:01:57 EST 2010 [INFO] Deleting unprocessed data before Tue Dec 07 01:02:09 EST 2010 [INFO] Database optimization done: 15329 ms [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESSFUL [INFO] ------------------------------------------------------------------------ [INFO] Total time: 46 seconds [INFO] Finished at: Tue Dec 07 13:02:12 EST 2010 [INFO] Final Memory: 73M/746M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/cytoscape-cvs?hl=en.
