See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/1177/>
------------------------------------------ [...truncated 72 lines...] [INFO] [resources:resources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/src/main/resources> [INFO] Copying 0 resource [INFO] snapshot org.cytoscape:parent:3.0.0-alpha4-SNAPSHOT: checking for updates from cytoscape_biopax_snapshot [INFO] snapshot org.cytoscape:parent:3.0.0-alpha4-SNAPSHOT: checking for updates from spring-osgi-snapshots [INFO] [pax:compile] [INFO] Compiling 26 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/classes> [INFO] [resources:testResources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/src/test/resources> [INFO] [pax:testCompile] [INFO] Compiling 16 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/test-classes> [INFO] [surefire:test] [INFO] Surefire report directory: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/surefire-reports> ------------------------------------------------------- T E S T S ------------------------------------------------------- Running org.cytoscape.task.AbstractRowTaskTest Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.205 sec Running org.cytoscape.task.AbstractRowTaskFactoryTest Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 sec Running org.cytoscape.task.AbstractNodeViewTaskFactoryTest Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.032 sec Running org.cytoscape.task.AbstractDataTableTaskTest Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.017 sec Running org.cytoscape.task.AbstractNetworkCollectionTaskTest Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.015 sec Running org.cytoscape.task.AbstractNetworkCollectionTaskFactoryTest Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.009 sec Running org.cytoscape.task.AbstractEdgeViewTaskFactoryTest Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.012 sec Running org.cytoscape.task.AbstractNetworkViewCollectionTaskTest Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 sec Running org.cytoscape.task.AbstractNetworkViewTaskFactoryTest Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 sec Running org.cytoscape.task.AbstractNetworkViewTaskTest Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 sec Running org.cytoscape.task.AbstractNodeViewTaskTest Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.009 sec Running org.cytoscape.task.AbstractNetworkViewCollectionTaskFactoryTest Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 sec Running org.cytoscape.task.AbstractEdgeViewTaskTest Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 sec Running org.cytoscape.task.AbstractNetworkTaskTest Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.024 sec Running org.cytoscape.task.AbstractDataTableTaskFactoryTest Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 sec Running org.cytoscape.task.AbstractNetworkTaskFactoryTest Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 sec Results : Tests run: 46, Failures: 0, Errors: 0, Skipped: 0 [HUDSON] Recording test results [INFO] [bundle:bundle] [INFO] [javadoc:jar {execution: attach-javadocs}] [ERROR] Error fetching link: http://cytoscape.wodaklab.org/javadoc/package-list. Ignored it. Loading source files for package org.cytoscape.task.creation... Loading source files for package org.cytoscape.task... Constructing Javadoc information... Standard Doclet version 1.6.0_20 Building tree for all the packages and classes... Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/apidocs/org/cytoscape/task/creation//NewEmptyNetworkViewFactory.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/apidocs/org/cytoscape/task//AbstractDataTableTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/apidocs/org/cytoscape/task//AbstractDataTableTaskFactory.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/apidocs/org/cytoscape/task//AbstractEdgeViewTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/apidocs/org/cytoscape/task//AbstractEdgeViewTaskFactory.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/apidocs/org/cytoscape/task//AbstractNetworkCollectionTask.html...> Generating 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Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/apidocs/org/cytoscape/task//class-use/AbstractDataTableTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/apidocs/org/cytoscape/task//class-use/NetworkViewCollectionTaskFactory.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/apidocs/org/cytoscape/task//class-use/AbstractNetworkViewCollectionTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/apidocs/org/cytoscape/task//class-use/NetworkCollectionTaskFactory.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/apidocs/org/cytoscape/task//class-use/AbstractNetworkCollectionTaskFactory.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/apidocs/org/cytoscape/task//class-use/RowTaskFactory.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/apidocs/org/cytoscape/task//class-use/AbstractEdgeViewTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/apidocs/org/cytoscape/task//class-use/AbstractNetworkCollectionTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/apidocs/org/cytoscape/task//class-use/AbstractNetworkTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/apidocs/org/cytoscape/task//class-use/AbstractNodeViewTask.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/apidocs/org/cytoscape/task//class-use/EdgeViewTaskFactory.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/apidocs/org/cytoscape/task//class-use/AbstractEdgeViewTaskFactory.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/apidocs/org/cytoscape/task//class-use/DataTableTaskFactory.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/apidocs/org/cytoscape/task//class-use/AbstractDataTableTaskFactory.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/apidocs/org/cytoscape/task//class-use/NodeViewTaskFactory.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/apidocs/org/cytoscape/task//package-use.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/apidocs/org/cytoscape/task/creation//package-use.html...> Building index for all the packages and classes... Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/apidocs/overview-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/apidocs/index-all.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/apidocs/deprecated-list.html...> Building index for all classes... Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/apidocs/allclasses-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/apidocs/allclasses-noframe.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/apidocs/index.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/apidocs/overview-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/apidocs/help-doc.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/apidocs/stylesheet.css...> 4 warnings [WARNING] Javadoc Warnings [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/src/main/java/org/cytoscape/task/DataTableTaskFactory.java>:46: warning - Tag @param cannot be used in inline documentation. It can only be used in the following types of documentation: class/interface, constructor, method. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/src/main/java/org/cytoscape/task/DataTableTaskFactory.java>:46: warning - Tag @param cannot be used in inline documentation. It can only be used in the following types of documentation: class/interface, constructor, method. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/src/main/java/org/cytoscape/task/DataTableTaskFactory.java>:46: warning - Tag @param cannot be used in inline documentation. It can only be used in the following types of documentation: class/interface, constructor, method. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/src/main/java/org/cytoscape/task/DataTableTaskFactory.java>:46: warning - Tag @param cannot be used in inline documentation. It can only be used in the following types of documentation: class/interface, constructor, method. [INFO] Building jar: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/core-task-api-3.0.0-alpha2-SNAPSHOT-javadoc.jar> [INFO] Preparing source:jar [WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation. [INFO] No goals needed for project - skipping [INFO] [source:jar {execution: attach-sources}] [INFO] Building jar: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/core-task-api-3.0.0-alpha2-SNAPSHOT-sources.jar> [INFO] [install:install] [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/core-task-api-3.0.0-alpha2-SNAPSHOT.jar> to /home/bturner/.m2/repository/org/cytoscape/core-task-api/3.0.0-alpha2-SNAPSHOT/core-task-api-3.0.0-alpha2-SNAPSHOT.jar [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/core-task-api-3.0.0-alpha2-SNAPSHOT-javadoc.jar> to /home/bturner/.m2/repository/org/cytoscape/core-task-api/3.0.0-alpha2-SNAPSHOT/core-task-api-3.0.0-alpha2-SNAPSHOT-javadoc.jar [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/core-task-api-3.0.0-alpha2-SNAPSHOT-sources.jar> to /home/bturner/.m2/repository/org/cytoscape/core-task-api/3.0.0-alpha2-SNAPSHOT/core-task-api-3.0.0-alpha2-SNAPSHOT-sources.jar [INFO] [bundle:install] [INFO] Parsing file:/home/bturner/.m2/repository/repository.xml [Fatal Error] repository.xml:3:1: Premature end of file. org.xml.sax.SAXParseException: Premature end of file. at com.sun.org.apache.xerces.internal.parsers.DOMParser.parse(DOMParser.java:249) at com.sun.org.apache.xerces.internal.jaxp.DocumentBuilderImpl.parse(DocumentBuilderImpl.java:284) at javax.xml.parsers.DocumentBuilder.parse(DocumentBuilder.java:208) at org.apache.felix.obrplugin.ObrUpdate.parseFile(ObrUpdate.java:347) at org.apache.felix.obrplugin.ObrUpdate.parseRepositoryXml(ObrUpdate.java:324) at org.apache.felix.obrplugin.ObrInstall.execute(ObrInstall.java:140) at org.apache.maven.plugin.DefaultPluginManager.executeMojo(DefaultPluginManager.java:483) at hudson.maven.agent.PluginManagerInterceptor.executeMojo(PluginManagerInterceptor.java:182) at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoals(DefaultLifecycleExecutor.java:678) at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoalWithLifecycle(DefaultLifecycleExecutor.java:540) at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoal(DefaultLifecycleExecutor.java:519) at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoalAndHandleFailures(DefaultLifecycleExecutor.java:371) at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeTaskSegments(DefaultLifecycleExecutor.java:332) at org.apache.maven.lifecycle.DefaultLifecycleExecutor.execute(DefaultLifecycleExecutor.java:181) at org.apache.maven.lifecycle.LifecycleExecutorInterceptor.execute(LifecycleExecutorInterceptor.java:65) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:356) at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:137) at org.apache.maven.cli.MavenCli.main(MavenCli.java:356) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.codehaus.classworlds.Launcher.launchEnhanced(Launcher.java:315) at org.codehaus.classworlds.Launcher.launch(Launcher.java:255) at hudson.maven.agent.Main.launch(Main.java:165) at hudson.maven.MavenBuilder.call(MavenBuilder.java:165) at hudson.maven.MavenModuleSetBuild$Builder.call(MavenModuleSetBuild.java:750) at hudson.maven.MavenModuleSetBuild$Builder.call(MavenModuleSetBuild.java:694) at hudson.remoting.UserRequest.perform(UserRequest.java:114) at hudson.remoting.UserRequest.perform(UserRequest.java:48) at hudson.remoting.Request$2.run(Request.java:270) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) at java.util.concurrent.FutureTask.run(FutureTask.java:138) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) at java.lang.Thread.run(Thread.java:619) [INFO] Writing OBR metadata [INFO] [deploy:deploy] [INFO] Retrieving previous build number from snapshots Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/core-task-api/3.0.0-alpha2-SNAPSHOT/core-task-api-3.0.0-alpha2-20101223.010224-108.jar 16K uploaded (core-task-api-3.0.0-alpha2-20101223.010224-108.jar) [INFO] Retrieving previous metadata from snapshots [INFO] Uploading repository metadata for: 'artifact org.cytoscape:core-task-api' [INFO] Retrieving previous metadata from snapshots [INFO] Uploading repository metadata for: 'snapshot org.cytoscape:core-task-api:3.0.0-alpha2-SNAPSHOT' [INFO] Uploading project information for core-task-api 3.0.0-alpha2-20101223.010224-108 [INFO] Retrieving previous build number from snapshots Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/core-task-api/3.0.0-alpha2-SNAPSHOT/core-task-api-3.0.0-alpha2-20101223.010224-108-javadoc.jar 132K uploaded (core-task-api-3.0.0-alpha2-20101223.010224-108-javadoc.jar) [INFO] Retrieving previous build number from snapshots Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/core-task-api/3.0.0-alpha2-SNAPSHOT/core-task-api-3.0.0-alpha2-20101223.010224-108-sources.jar 29K uploaded (core-task-api-3.0.0-alpha2-20101223.010224-108-sources.jar) [INFO] [bundle:deploy] [INFO] Remote OBR update disabled (enable with -DremoteOBR) [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Core Task api/modules/org.cytoscape$core-task-api/builds/2010-12-22_20-01-35/archive/org.cytoscape/core-task-api/3.0.0-alpha2-SNAPSHOT/pom.xml [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/core-task-api-3.0.0-alpha2-SNAPSHOT.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Core Task api/modules/org.cytoscape$core-task-api/builds/2010-12-22_20-01-35/archive/org.cytoscape/core-task-api/3.0.0-alpha2-20101223.010224-108/core-task-api-3.0.0-alpha2-SNAPSHOT.jar [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/core-task-api-3.0.0-alpha2-SNAPSHOT-javadoc.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Core Task api/modules/org.cytoscape$core-task-api/builds/2010-12-22_20-01-35/archive/org.cytoscape/core-task-api/3.0.0-alpha2-20101223.010224-108/core-task-api-3.0.0-alpha2-SNAPSHOT-javadoc.jar [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20api/ws/trunk/target/core-task-api-3.0.0-alpha2-SNAPSHOT-sources.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Core Task api/modules/org.cytoscape$core-task-api/builds/2010-12-22_20-01-35/archive/org.cytoscape/core-task-api/3.0.0-alpha2-20101223.010224-108/core-task-api-3.0.0-alpha2-SNAPSHOT-sources.jar [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESSFUL [INFO] ------------------------------------------------------------------------ [INFO] Total time: 51 seconds [INFO] Finished at: Wed Dec 22 20:02:29 EST 2010 [INFO] Final Memory: 66M/726M [INFO] ------------------------------------------------------------------------ Waiting for Hudson to finish collecting data channel stopped [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.core-task-api [INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar] [INFO] Sonar host: http://localhost:8021/sonar [INFO] Sonar version: 2.4 [INFO] [sonar-core:internal] [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Can not execute Sonar Embedded error: PicoLifecycleException: method 'public void org.sonar.jpa.session.AbstractDatabaseConnector.start()', instance 'org.sonar.jpa.session.driverdatabaseconnec...@1b78efd8, java.lang.RuntimeException: wrapper com.mysql.jdbc.Driver [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 23 seconds [INFO] Finished at: Wed Dec 22 20:02:55 EST 2010 [INFO] Final Memory: 30M/338M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/cytoscape-cvs?hl=en.
