See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Functions%20Impl/140/changes>
Changes: [ruschein] Replaced Class with Class<?>. ------------------------------------------ Started by an SCM change Checking out http://chianti.ucsd.edu/svn/core3/equations-functions-impl/trunk A osgi.bnd A src A src/test A src/test/java A src/test/java/org A src/test/java/org/cytoscape A src/test/java/org/cytoscape/equations A src/test/java/org/cytoscape/equations/internal A src/test/java/org/cytoscape/equations/internal/functions A src/test/java/org/cytoscape/equations/internal/functions/InDegreeTest.java A src/test/java/org/cytoscape/equations/internal/functions/OutDegreeTest.java A src/test/java/org/cytoscape/equations/internal/functions/TargetIDTest.java A src/test/java/org/cytoscape/equations/internal/functions/DegreeTest.java A src/test/java/org/cytoscape/equations/internal/functions/SourceIDTest.java A src/main A src/main/java A src/main/java/org A src/main/java/org/cytoscape A src/main/java/org/cytoscape/equations A src/main/java/org/cytoscape/equations/internal A src/main/java/org/cytoscape/equations/internal/SUIDToEdgeMapper.java A src/main/java/org/cytoscape/equations/internal/SUIDToNodeMapper.java A src/main/java/org/cytoscape/equations/internal/FunctionRegistrar.java A src/main/java/org/cytoscape/equations/internal/functions A src/main/java/org/cytoscape/equations/internal/functions/InDegree.java A src/main/java/org/cytoscape/equations/internal/functions/OutDegree.java A src/main/java/org/cytoscape/equations/internal/functions/TargetID.java A src/main/java/org/cytoscape/equations/internal/functions/Degree.java A src/main/java/org/cytoscape/equations/internal/functions/SourceID.java A src/main/resources A src/main/resources/META-INF A src/main/resources/META-INF/spring A src/main/resources/META-INF/spring/bundle-context-osgi.xml A src/main/resources/META-INF/spring/bundle-context.xml A pom.xml U . At revision 23296 No emails were triggered. Parsing POMs [trunk] $ java -cp /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-agent-1.385.jar:/R1/tools/maven/apache-maven-2.1.0/boot/classworlds-1.1.jar hudson.maven.agent.Main /R1/tools/maven/apache-maven-2.1.0 /R1/resources/webservers/tomcat_2/webapps/hudson/WEB-INF/lib/remoting-1.385.jar /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-interceptor-1.385.jar 37211 /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven2.1-interceptor-1.2.jar <===[HUDSON REMOTING CAPACITY]===> channel started Executing Maven: -B -f <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Functions%20Impl/ws/trunk/pom.xml> deploy [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.equations-functions-impl [INFO] task-segment: [deploy] [INFO] ------------------------------------------------------------------------ [INFO] [resources:resources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] skip non existing resourceDirectory <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Functions%20Impl/ws/trunk/src/integration/resources> [INFO] Copying 0 resource [INFO] snapshot org.cytoscape:equations-api:1.0-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.cytoscape:equations-api:1.0-SNAPSHOT: checking for updates from cytoscape_biopax_snapshot [INFO] snapshot org.cytoscape:equations-api:1.0-SNAPSHOT: checking for updates from spring-osgi-snapshots [INFO] snapshot org.cytoscape:equations-impl:1.0-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.cytoscape:equations-impl:1.0-SNAPSHOT: checking for updates from cytoscape_biopax_snapshot [INFO] snapshot org.cytoscape:equations-impl:1.0-SNAPSHOT: checking for updates from spring-osgi-snapshots [INFO] snapshot org.cytoscape:model-api:3.0.0-alpha2-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.cytoscape:model-api:3.0.0-alpha2-SNAPSHOT: checking for updates from cytoscape_biopax_snapshot [INFO] snapshot org.cytoscape:model-api:3.0.0-alpha2-SNAPSHOT: checking for updates from spring-osgi-snapshots [INFO] snapshot org.cytoscape:parent:3.0.0-alpha4-SNAPSHOT: checking for updates from cytoscape_biopax_snapshot [INFO] snapshot org.cytoscape:parent:3.0.0-alpha4-SNAPSHOT: checking for updates from spring-osgi-snapshots [INFO] snapshot org.cytoscape:event-api:3.0.0-alpha2-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.cytoscape:event-api:3.0.0-alpha2-SNAPSHOT: checking for updates from cytoscape_biopax_snapshot [INFO] snapshot org.cytoscape:event-api:3.0.0-alpha2-SNAPSHOT: checking for updates from spring-osgi-snapshots [INFO] snapshot org.cytoscape:session-api:3.0.0-alpha2-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.cytoscape:session-api:3.0.0-alpha2-SNAPSHOT: checking for updates from cytoscape_biopax_snapshot [INFO] snapshot org.cytoscape:session-api:3.0.0-alpha2-SNAPSHOT: checking for updates from spring-osgi-snapshots [INFO] snapshot org.cytoscape:vizmap-api:3.0.0-alpha2-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.cytoscape:vizmap-api:3.0.0-alpha2-SNAPSHOT: checking for updates from cytoscape_biopax_snapshot [INFO] snapshot org.cytoscape:vizmap-api:3.0.0-alpha2-SNAPSHOT: checking for updates from spring-osgi-snapshots [INFO] snapshot org.cytoscape:viewmodel-api:3.0.0-alpha3-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.cytoscape:viewmodel-api:3.0.0-alpha3-SNAPSHOT: checking for updates from cytoscape_biopax_snapshot [INFO] snapshot org.cytoscape:viewmodel-api:3.0.0-alpha3-SNAPSHOT: checking for updates from spring-osgi-snapshots [INFO] snapshot org.cytoscape:property-api:3.0.0-alpha2-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.cytoscape:property-api:3.0.0-alpha2-SNAPSHOT: checking for updates from cytoscape_biopax_snapshot [INFO] snapshot org.cytoscape:property-api:3.0.0-alpha2-SNAPSHOT: checking for updates from spring-osgi-snapshots [INFO] [pax:compile] [INFO] Compiling 8 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Functions%20Impl/ws/trunk/target/classes> [INFO] [build-helper:add-test-source {execution: add-test-source}] [INFO] Test Source directory: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Functions%20Impl/ws/trunk/src/integration/java> added. [INFO] [resources:testResources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Functions%20Impl/ws/trunk/src/test/resources> [INFO] [pax:testCompile] [INFO] Compiling 5 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Functions%20Impl/ws/trunk/target/test-classes> [INFO] [recovering meta-data] [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Functions%20Impl/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Equation Functions Impl/modules/org.cytoscape$equations-functions-impl/builds/2011-01-04_16-01-29/archive/org.cytoscape/equations-functions-impl/1.0-SNAPSHOT/pom.xml [INFO] ------------------------------------------------------------------------ [ERROR] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Compilation failure <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Functions%20Impl/ws/trunk/src/test/java/org/cytoscape/equations/internal/functions/SourceIDTest.java>:[83,15] compile(java.lang.String,java.util.Map<java.lang.String,java.lang.Class>) in org.cytoscape.equations.EqnCompiler cannot be applied to (java.lang.String,java.util.Map<java.lang.String,java.lang.Class<?>>) <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Functions%20Impl/ws/trunk/src/test/java/org/cytoscape/equations/internal/functions/DegreeTest.java>:[85,15] compile(java.lang.String,java.util.Map<java.lang.String,java.lang.Class>) in org.cytoscape.equations.EqnCompiler cannot be applied to (java.lang.String,java.util.Map<java.lang.String,java.lang.Class<?>>) <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Functions%20Impl/ws/trunk/src/test/java/org/cytoscape/equations/internal/functions/InDegreeTest.java>:[85,15] compile(java.lang.String,java.util.Map<java.lang.String,java.lang.Class>) in org.cytoscape.equations.EqnCompiler cannot be applied to (java.lang.String,java.util.Map<java.lang.String,java.lang.Class<?>>) <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Functions%20Impl/ws/trunk/src/test/java/org/cytoscape/equations/internal/functions/TargetIDTest.java>:[83,15] compile(java.lang.String,java.util.Map<java.lang.String,java.lang.Class>) in org.cytoscape.equations.EqnCompiler cannot be applied to (java.lang.String,java.util.Map<java.lang.String,java.lang.Class<?>>) <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Functions%20Impl/ws/trunk/src/test/java/org/cytoscape/equations/internal/functions/OutDegreeTest.java>:[85,15] compile(java.lang.String,java.util.Map<java.lang.String,java.lang.Class>) in org.cytoscape.equations.EqnCompiler cannot be applied to (java.lang.String,java.util.Map<java.lang.String,java.lang.Class<?>>) [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 12 seconds [INFO] Finished at: Tue Jan 04 16:01:44 EST 2011 [INFO] Final Memory: 57M/476M [INFO] ------------------------------------------------------------------------ Sending e-mails to: [email protected] channel stopped [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.equations-functions-impl [INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar] [INFO] Sonar host: http://localhost:8021/sonar [INFO] Sonar version: 2.4 Downloading: http://localhost:8021/sonar/deploy/maven/org/codehaus/sonar/runtime/sonar-core-maven-plugin/20110104010108/sonar-core-maven-plugin-20110104010108.pom 1863/512b 512b downloaded (sonar-core-maven-plugin-20110104010108.pom) Downloading: http://localhost:8021/sonar/deploy/maven/org/codehaus/sonar/runtime/sonar-core-maven-plugin/20110104010108/sonar-core-maven-plugin-20110104010108.jar 0/6K 1/6K 1/6K 2/6K 2/6K 3/6K 4/6K 4/6K 5/6K 5/6K 6/6K 6/6K 7/6K 8/6K 6K downloaded (sonar-core-maven-plugin-20110104010108.jar) [INFO] [sonar-core:internal] [INFO] Database dialect class org.sonar.jpa.dialect.MySql [INFO] ------------- Analyzing org.cytoscape.equations-functions-impl [INFO] Selected quality profile : [name=Cytoscape,language=java] [INFO] Configure maven plugins... [INFO] Sensor JavaSourceImporter... [INFO] Sensor JavaSourceImporter done: 429 ms [INFO] Sensor AsynchronousMeasuresSensor... [INFO] Sensor AsynchronousMeasuresSensor done: 32 ms [INFO] Sensor SquidSensor... [INFO] Java AST scan... [INFO] Java AST scan done: 278 ms [INFO] Java bytecode scan... [INFO] Java bytecode scan done: 71 ms [INFO] Squid extraction... [INFO] Package design analysis... [INFO] Package design analysis done: 33 ms [INFO] Squid extraction done: 291 ms [INFO] Sensor SquidSensor done: 839 ms [INFO] Sensor FindbugsSensor... [INFO] Execute Findbugs 1.3.9... [INFO] Findbugs output report: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Functions%20Impl/ws/trunk/target/sonar/findbugs-result.xml> [INFO] Execute Findbugs 1.3.9 done: 3951 ms [INFO] Sensor FindbugsSensor done: 4038 ms [INFO] Execute maven plugin cobertura-maven-plugin... [INFO] artifact org.codehaus.mojo:cobertura-maven-plugin: checking for updates from maven2-repository.dev.java.net [INFO] artifact org.codehaus.mojo:cobertura-maven-plugin: checking for updates from maven-repository.dev.java.net [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.equations-functions-impl [INFO] task-segment: [org.codehaus.mojo:cobertura-maven-plugin::cobertura] [INFO] ------------------------------------------------------------------------ [INFO] Preparing cobertura:cobertura [INFO] [resources:resources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] skip non existing resourceDirectory <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Functions%20Impl/ws/trunk/src/integration/resources> [INFO] Copying 0 resource [INFO] [pax:compile] [INFO] Nothing to compile - all classes are up to date [INFO] [cobertura:instrument] [INFO] Cobertura 1.9.4.1 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file Instrumenting 8 files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Functions%20Impl/ws/trunk/target/generated-classes/cobertura> Cobertura: Saved information on 8 classes. Instrument time: 1239ms [INFO] Instrumentation was successful. [INFO] [build-helper:add-test-source {execution: add-test-source}] [INFO] Test Source directory: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Functions%20Impl/ws/trunk/src/integration/java> added. [INFO] [resources:testResources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Functions%20Impl/ws/trunk/src/test/resources> [INFO] [pax:testCompile] [INFO] Compiling 5 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Equation%20Functions%20Impl/ws/trunk/target/test-classes> [INFO] [recovering meta-data] [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Can not execute Sonar Embedded error: Unable to execute maven plugin Compilation failure [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 24 seconds [INFO] Finished at: Tue Jan 04 16:02:20 EST 2011 [INFO] Final Memory: 75M/738M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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