See 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/194/>

------------------------------------------
[...truncated 464 lines...]
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/src/main/java/org/cytoscape/internal/layout/ui/LayoutSettingsDialog.java>:[105,14]
 setParent(java.awt.Window) in org.cytoscape.work.swing.GUITaskManager cannot 
be applied to (javax.swing.JPanel)

<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/src/main/java/org/cytoscape/internal/layout/ui/LayoutSettingsDialog.java>:[187,15]
 setParent(java.awt.Window) in org.cytoscape.work.swing.GUITaskManager cannot 
be applied to (javax.swing.JPanel)


[INFO] ------------------------------------------------------------------------
[INFO] For more information, run Maven with the -e switch
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 7 seconds
[INFO] Finished at: Thu Jan 13 19:40:17 EST 2011
[INFO] Final Memory: 49M/487M
[INFO] ------------------------------------------------------------------------
Sending e-mails to: [email protected]
channel stopped
[trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn 
org.codehaus.sonar:sonar-maven-plugin:1.8:sonar 
-Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar 
-Dsonar.jdbc.password=deploysonar 
-Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar 
-Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true
[INFO] Scanning for projects...
WAGON_VERSION: 1.0-beta-2
[INFO] ------------------------------------------------------------------------
[INFO] Building Cytoscape Swing Application Impl
[INFO]    task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] 
(aggregator-style)
[INFO] ------------------------------------------------------------------------
[INFO] [sonar:sonar]
[INFO] Sonar host: http://localhost:8021/sonar
[INFO] Sonar version: 2.4
[INFO] [sonar-core:internal]
[INFO]  Database dialect class org.sonar.jpa.dialect.MySql
[INFO]  -------------  Analyzing Cytoscape Swing Application Impl
[INFO]  Selected quality profile : [name=Cytoscape,language=java]
[INFO]  Configure maven plugins...
[INFO]  Sensor JavaSourceImporter...
[INFO]  Sensor JavaSourceImporter done: 748 ms
[INFO]  Sensor AsynchronousMeasuresSensor...
[INFO]  Sensor AsynchronousMeasuresSensor done: 33 ms
[INFO]  Sensor SquidSensor...
[INFO]  Java AST scan...
[INFO]  Java AST scan done: 967 ms
[INFO]  Java bytecode scan...
[WARN]  Class 'org/cytoscape/internal/task/NetworkViewTaskFactoryTunableAction' 
is not accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/CyVersion' is not accessible through the 
ClassLoader.
[WARN]  Class 'org/cytoscape/internal/actions/CytoPanelAction' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/CyDesktopManager' is not accessible 
through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/actions/UndoAction' is not accessible 
through the ClassLoader.
[WARN]  Class 
'org/cytoscape/internal/dialogs/BookmarkDialogImpl$EditBookmarkDialog' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/task/CytoPanelTaskFactoryTunableAction' 
is not accessible through the ClassLoader.
[WARN]  Class 
'org/cytoscape/internal/layout/ui/LayoutSettingsDialog$AlgorithmActionListener' 
is not accessible through the ClassLoader.
[WARN]  Class 
'org/cytoscape/internal/dialogs/PreferenceValueDialog$CancelButtonListener' is 
not accessible through the ClassLoader.
[WARN]  Class 
'org/cytoscape/internal/task/CytoPanelTaskFactoryTunableAction$CytoPanelComponentImp'
 is not accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/actions/RedoAction' is not accessible 
through the ClassLoader.
[WARN]  Class 
'org/cytoscape/internal/task/CytoPanelTaskFactoryTunableAction$CytoPanelComponentImp$1'
 is not accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/help/HelpContentsTaskFactory' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/dialogs/BookmarkDialogImpl$MyListModel' 
is not accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/NetworkPanel$TreeCellRenderer' is 
not accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/NetworkPanel$PopupListener' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/task/NetworkTaskFactoryTunableAction' is 
not accessible through the ClassLoader.
[WARN]  Class 
'org/cytoscape/internal/layout/ui/LayoutSettingsDialog$MyItemRenderer' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/layout/ui/SettingsAction' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/NetworkPanel$1' is not accessible 
through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/dialogs/BookmarkDialogImpl' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/dialogs/BookmarkDialogFactoryImpl' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/NetworkViewManager' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/ToolCytoPanelListener' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/help/HelpAboutTaskFactory' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/help/HelpContactHelpDeskTaskFactory' 
is not accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/NetworkViewManager' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/NetworkViewManager' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/CytoscapeMenuPopulator' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/NetworkViewManager$2' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/SessionShutdownHandler' is not accessible 
through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/NetworkViewManager$1' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/dialogs/AboutDialogFactoryImpl' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/AbstractNetworkNameListener' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/help/ArrangeTaskFactory' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/NetworkPanel$NetworkTreeNode' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/dialogs/PreferenceValueDialog' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/actions/ExitAction' is not accessible 
through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/dialogs/AboutDialogImpl' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/actions/PrintAction' is not accessible 
through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/ShutdownHandler' is not accessible 
through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/CyDesktopManager$Arrange' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/NetworkViewManager' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/layout/ui/LayoutSettingsDialog' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/CytoPanelUtil' is not accessible 
through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/actions/BookmarkAction' is not accessible 
through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/select/SelectEdgeViewUpdater' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/help/HelpContentsTask' is not 
accessible through the ClassLoader.
[WARN]  Class 
'org/cytoscape/internal/dialogs/PreferenceValueDialog$OkButtonListener' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/NetworkPanel$NetworkTreeTableModel' 
is not accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/select/SelectRegisterListener' is not 
accessible through the ClassLoader.
[WARN]  Class 
'org/cytoscape/internal/task/CytoPanelTaskFactoryTunableAction$ExecuteButtonListener'
 is not accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/CytoPanelUtil' is not accessible 
through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/NetworkPanel' is not accessible 
through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/ToolCytoPanelListener' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/CyDesktopManager$Arrange' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/CyDesktopManager' is not accessible 
through the ClassLoader.
[WARN]  Class 
'org/cytoscape/internal/dialogs/BookmarkDialogImpl$MyListCellRenderer' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/dialogs/PreferenceValueDialog' is not 
accessible through the ClassLoader.
[WARN]  Class 
'org/cytoscape/internal/task/NetworkCollectionTaskFactoryTunableAction' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/select/SelectNodeViewUpdater' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/task/NetworkViewTaskFactoryTunableAction' 
is not accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/CyVersion' is not accessible through the 
ClassLoader.
[WARN]  Class 'org/cytoscape/internal/actions/CytoPanelAction' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/CyDesktopManager' is not accessible 
through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/actions/UndoAction' is not accessible 
through the ClassLoader.
[WARN]  Class 
'org/cytoscape/internal/dialogs/BookmarkDialogImpl$EditBookmarkDialog' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/task/CytoPanelTaskFactoryTunableAction' 
is not accessible through the ClassLoader.
[WARN]  Class 
'org/cytoscape/internal/layout/ui/LayoutSettingsDialog$AlgorithmActionListener' 
is not accessible through the ClassLoader.
[WARN]  Class 
'org/cytoscape/internal/dialogs/PreferenceValueDialog$CancelButtonListener' is 
not accessible through the ClassLoader.
[WARN]  Class 
'org/cytoscape/internal/task/CytoPanelTaskFactoryTunableAction$CytoPanelComponentImp'
 is not accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/actions/RedoAction' is not accessible 
through the ClassLoader.
[WARN]  Class 
'org/cytoscape/internal/task/CytoPanelTaskFactoryTunableAction$CytoPanelComponentImp$1'
 is not accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/help/HelpContentsTaskFactory' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/dialogs/BookmarkDialogImpl$MyListModel' 
is not accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/NetworkPanel$TreeCellRenderer' is 
not accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/NetworkPanel$PopupListener' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/task/NetworkTaskFactoryTunableAction' is 
not accessible through the ClassLoader.
[WARN]  Class 
'org/cytoscape/internal/layout/ui/LayoutSettingsDialog$MyItemRenderer' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/layout/ui/SettingsAction' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/NetworkPanel$1' is not accessible 
through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/dialogs/BookmarkDialogImpl' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/dialogs/BookmarkDialogFactoryImpl' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/help/HelpAboutTaskFactory' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/help/HelpContactHelpDeskTaskFactory' 
is not accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/CytoscapeMenuPopulator' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/NetworkViewManager$2' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/SessionShutdownHandler' is not accessible 
through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/NetworkViewManager$1' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/dialogs/AboutDialogFactoryImpl' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/AbstractNetworkNameListener' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/help/ArrangeTaskFactory' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/NetworkPanel$NetworkTreeNode' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/dialogs/PreferenceValueDialog' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/actions/ExitAction' is not accessible 
through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/dialogs/AboutDialogImpl' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/actions/PrintAction' is not accessible 
through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/ShutdownHandler' is not accessible 
through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/CyDesktopManager$Arrange' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/NetworkViewManager' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/layout/ui/LayoutSettingsDialog' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/actions/BookmarkAction' is not accessible 
through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/select/SelectEdgeViewUpdater' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/help/HelpContentsTask' is not 
accessible through the ClassLoader.
[WARN]  Class 
'org/cytoscape/internal/dialogs/PreferenceValueDialog$OkButtonListener' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/NetworkPanel$NetworkTreeTableModel' 
is not accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/select/SelectRegisterListener' is not 
accessible through the ClassLoader.
[WARN]  Class 
'org/cytoscape/internal/task/CytoPanelTaskFactoryTunableAction$ExecuteButtonListener'
 is not accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/CytoPanelUtil' is not accessible 
through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/NetworkPanel' is not accessible 
through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/ToolCytoPanelListener' is not 
accessible through the ClassLoader.
[WARN]  Class 
'org/cytoscape/internal/dialogs/BookmarkDialogImpl$MyListCellRenderer' is not 
accessible through the ClassLoader.
[WARN]  Class 
'org/cytoscape/internal/task/NetworkCollectionTaskFactoryTunableAction' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/select/SelectNodeViewUpdater' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/task/NetworkViewTaskFactoryTunableAction' 
is not accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/CyVersion' is not accessible through the 
ClassLoader.
[WARN]  Class 'org/cytoscape/internal/actions/CytoPanelAction' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/CyDesktopManager' is not accessible 
through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/actions/UndoAction' is not accessible 
through the ClassLoader.
[WARN]  Class 
'org/cytoscape/internal/dialogs/BookmarkDialogImpl$EditBookmarkDialog' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/task/CytoPanelTaskFactoryTunableAction' 
is not accessible through the ClassLoader.
[WARN]  Class 
'org/cytoscape/internal/layout/ui/LayoutSettingsDialog$AlgorithmActionListener' 
is not accessible through the ClassLoader.
[WARN]  Class 
'org/cytoscape/internal/dialogs/PreferenceValueDialog$CancelButtonListener' is 
not accessible through the ClassLoader.
[WARN]  Class 
'org/cytoscape/internal/task/CytoPanelTaskFactoryTunableAction$CytoPanelComponentImp'
 is not accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/actions/RedoAction' is not accessible 
through the ClassLoader.
[WARN]  Class 
'org/cytoscape/internal/task/CytoPanelTaskFactoryTunableAction$CytoPanelComponentImp$1'
 is not accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/help/HelpContentsTaskFactory' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/dialogs/BookmarkDialogImpl$MyListModel' 
is not accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/NetworkPanel$TreeCellRenderer' is 
not accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/NetworkPanel$PopupListener' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/task/NetworkTaskFactoryTunableAction' is 
not accessible through the ClassLoader.
[WARN]  Class 
'org/cytoscape/internal/layout/ui/LayoutSettingsDialog$MyItemRenderer' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/layout/ui/SettingsAction' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/NetworkPanel$1' is not accessible 
through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/dialogs/BookmarkDialogImpl' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/dialogs/BookmarkDialogFactoryImpl' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/help/HelpAboutTaskFactory' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/help/HelpContactHelpDeskTaskFactory' 
is not accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/CytoscapeMenuPopulator' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/NetworkViewManager$2' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/SessionShutdownHandler' is not accessible 
through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/NetworkViewManager$1' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/dialogs/AboutDialogFactoryImpl' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/AbstractNetworkNameListener' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/help/ArrangeTaskFactory' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/NetworkPanel$NetworkTreeNode' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/dialogs/PreferenceValueDialog' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/actions/ExitAction' is not accessible 
through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/dialogs/AboutDialogImpl' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/actions/PrintAction' is not accessible 
through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/ShutdownHandler' is not accessible 
through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/CyDesktopManager$Arrange' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/NetworkViewManager' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/layout/ui/LayoutSettingsDialog' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/actions/BookmarkAction' is not accessible 
through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/select/SelectEdgeViewUpdater' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/help/HelpContentsTask' is not 
accessible through the ClassLoader.
[WARN]  Class 
'org/cytoscape/internal/dialogs/PreferenceValueDialog$OkButtonListener' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/NetworkPanel$NetworkTreeTableModel' 
is not accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/select/SelectRegisterListener' is not 
accessible through the ClassLoader.
[WARN]  Class 
'org/cytoscape/internal/task/CytoPanelTaskFactoryTunableAction$ExecuteButtonListener'
 is not accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/CytoPanelUtil' is not accessible 
through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/NetworkPanel' is not accessible 
through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/view/ToolCytoPanelListener' is not 
accessible through the ClassLoader.
[WARN]  Class 
'org/cytoscape/internal/dialogs/BookmarkDialogImpl$MyListCellRenderer' is not 
accessible through the ClassLoader.
[WARN]  Class 
'org/cytoscape/internal/task/NetworkCollectionTaskFactoryTunableAction' is not 
accessible through the ClassLoader.
[WARN]  Class 'org/cytoscape/internal/select/SelectNodeViewUpdater' is not 
accessible through the ClassLoader.
[INFO]  Java bytecode scan done: 484 ms
[INFO]  Squid extraction...
[INFO]  Package design analysis...
[INFO]  Package design analysis done: 25 ms
[INFO]  Squid extraction done: 1192 ms
[INFO]  Sensor SquidSensor done: 2722 ms
[INFO]  Sensor FindbugsSensor...
[INFO]  Execute Findbugs 1.3.9...
[INFO]  Findbugs output report: 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/sonar/findbugs-result.xml>
The following classes needed for analysis were missing:
  org.cytoscape.internal.dialogs.PreferenceValueDialog
  org.cytoscape.internal.view.CyDesktopManager$Arrange
  org.cytoscape.internal.view.CytoPanelUtil
  org.cytoscape.internal.view.NetworkViewManager
  org.cytoscape.internal.view.ToolCytoPanelListener
  org.cytoscape.internal.view.CyDesktopManager
  org.cytoscape.internal.view.NetworkPanel
[INFO]  Execute Findbugs 1.3.9 done: 9713 ms
[INFO]  Sensor FindbugsSensor done: 9988 ms
[INFO]  Execute maven plugin cobertura-maven-plugin...
[INFO] ------------------------------------------------------------------------
[INFO] Building Cytoscape Swing Application Impl
[INFO]    task-segment: [org.codehaus.mojo:cobertura-maven-plugin::cobertura]
[INFO] ------------------------------------------------------------------------
[INFO] Preparing cobertura:cobertura
[INFO] [resources:resources]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 347 resources
[INFO] [pax:compile]
[INFO] Compiling 35 source files to 
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Swing%20Application%20Impl/ws/trunk/target/classes>
[INFO] [recovering meta-data]
[INFO] ------------------------------------------------------------------------
[ERROR] BUILD ERROR
[INFO] ------------------------------------------------------------------------
[INFO] Can not execute Sonar

Embedded error: Unable to execute maven plugin
Compilation failure
[INFO] ------------------------------------------------------------------------
[INFO] For more information, run Maven with the -e switch
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 27 seconds
[INFO] Finished at: Thu Jan 13 19:40:55 EST 2011
[INFO] Final Memory: 77M/799M
[INFO] ------------------------------------------------------------------------

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