See <http://cytoscape.wodaklab.org/hudson/job/BioMart%20Web%20Service%20Client/34/>
------------------------------------------ Started by upstream project "Cy3 Web Service Impl" build number 49 Checking out http://chianti.ucsd.edu/svn/core3/webservice-biomart-client/trunk A osgi.bnd A src A src/test A src/test/java A src/test/java/optional A src/main A src/main/java A src/main/java/org A src/main/java/org/cytoscape A src/main/java/org/cytoscape/io A src/main/java/org/cytoscape/io/webservice A src/main/java/org/cytoscape/io/webservice/biomart A src/main/java/org/cytoscape/io/webservice/biomart/event A src/main/java/org/cytoscape/io/webservice/biomart/event/RegistoryImportedEvent.java A src/main/java/org/cytoscape/io/webservice/biomart/task A src/main/java/org/cytoscape/io/webservice/biomart/task/ShowBiomartGUIAction.java A src/main/java/org/cytoscape/io/webservice/biomart/task/LoadRepositoryTask.java A src/main/java/org/cytoscape/io/webservice/biomart/task/ImportFilterTask.java A src/main/java/org/cytoscape/io/webservice/biomart/task/ImportAttributeListTaskFactory.java A src/main/java/org/cytoscape/io/webservice/biomart/task/ImportTableTask.java A src/main/java/org/cytoscape/io/webservice/biomart/task/BioMartTaskFactory.java A src/main/java/org/cytoscape/io/webservice/biomart/task/ImportFilterTaskFactory.java A src/main/java/org/cytoscape/io/webservice/biomart/task/ImportAttributeListTask.java A src/main/java/org/cytoscape/io/webservice/biomart/task/LoadRepositoryResult.java A src/main/java/org/cytoscape/io/webservice/biomart/BiomartQuery.java A src/main/java/org/cytoscape/io/webservice/biomart/BiomartClient.java A src/main/java/org/cytoscape/io/webservice/biomart/rest A src/main/java/org/cytoscape/io/webservice/biomart/rest/Attribute.java A src/main/java/org/cytoscape/io/webservice/biomart/rest/Dataset.java A src/main/java/org/cytoscape/io/webservice/biomart/rest/Filter.java A src/main/java/org/cytoscape/io/webservice/biomart/rest/BiomartRestClient.java A src/main/java/org/cytoscape/io/webservice/biomart/rest/QueryBuilderUtil.java A src/main/java/org/cytoscape/io/webservice/biomart/rest/XMLQueryBuilder.java A src/main/java/org/cytoscape/io/webservice/biomart/ui A src/main/java/org/cytoscape/io/webservice/biomart/ui/BiomartMainDialog.java A src/main/java/org/cytoscape/io/webservice/biomart/ui/BiomartAttrMappingPanel.java A src/main/java/org/cytoscape/io/webservice/biomart/ui/CheckBoxJList.java A src/main/java/org/cytoscape/io/webservice/biomart/ui/AttributeImportPanel.java A src/main/resources A src/main/resources/META-INF A src/main/resources/META-INF/spring A src/main/resources/META-INF/spring/bundle-context-osgi.xml A src/main/resources/META-INF/spring/bundle-context.xml A src/main/resources/settings AU src/main/resources/settings/tax_report.txt A src/main/resources/settings/filterconversion.txt A src/main/resources/settings/databaselist.txt A src/main/resources/images AU src/main/resources/images/logo_biomart2.png A pom.xml At revision 23544 WARNING: clock of the subversion server appears to be out of sync. This can result in inconsistent check out behavior. no change for http://chianti.ucsd.edu/svn/core3/webservice-biomart-client/trunk since the previous build No emails were triggered. Parsing POMs [trunk] $ java -cp /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-agent-1.385.jar:/R1/tools/maven/apache-maven-2.1.0/boot/classworlds-1.1.jar hudson.maven.agent.Main /R1/tools/maven/apache-maven-2.1.0 /R1/resources/webservers/tomcat_2/webapps/hudson/WEB-INF/lib/remoting-1.385.jar /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-interceptor-1.385.jar 48931 /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven2.1-interceptor-1.2.jar <===[HUDSON REMOTING CAPACITY]===> channel started Executing Maven: -B -f <http://cytoscape.wodaklab.org/hudson/job/BioMart%20Web%20Service%20Client/ws/trunk/pom.xml> deploy [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.io.webservice-biomart-client [org.cytoscape.io.webservice.biomart] [INFO] task-segment: [deploy] [INFO] ------------------------------------------------------------------------ [INFO] [resources:resources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 6 resources [INFO] [pax:compile] [INFO] Compiling 22 source files to <http://cytoscape.wodaklab.org/hudson/job/BioMart%20Web%20Service%20Client/ws/trunk/target/classes> [INFO] [recovering meta-data] [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/BioMart%20Web%20Service%20Client/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/BioMart Web Service Client/modules/org.cytoscape$webservice-biomart-client/builds/2011-01-21_14-45-20/archive/org.cytoscape/webservice-biomart-client/0.0.1-SNAPSHOT/pom.xml [INFO] ------------------------------------------------------------------------ [ERROR] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Compilation failure <http://cytoscape.wodaklab.org/hudson/job/BioMart%20Web%20Service%20Client/ws/trunk/src/main/java/org/cytoscape/io/webservice/biomart/ui/BiomartAttrMappingPanel.java>:[237,14] cannot find symbol symbol : method executeAndWait(org.cytoscape.io.webservice.biomart.task.ImportAttributeListTaskFactory) location: interface org.cytoscape.work.TaskManager <http://cytoscape.wodaklab.org/hudson/job/BioMart%20Web%20Service%20Client/ws/trunk/src/main/java/org/cytoscape/io/webservice/biomart/ui/BiomartAttrMappingPanel.java>:[286,14] cannot find symbol symbol : method executeAndWait(org.cytoscape.io.webservice.biomart.task.ImportFilterTaskFactory) location: interface org.cytoscape.work.TaskManager [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 6 seconds [INFO] Finished at: Fri Jan 21 14:45:29 EST 2011 [INFO] Final Memory: 49M/492M [INFO] ------------------------------------------------------------------------ Sending e-mails to: [email protected] channel stopped [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.io.webservice-biomart-client [org.cytoscape.io.webservice.biomart] [INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar] [INFO] Sonar host: http://localhost:8021/sonar [INFO] Sonar version: 2.4 [INFO] [sonar-core:internal] [INFO] Database dialect class org.sonar.jpa.dialect.MySql [INFO] ------------- Analyzing org.cytoscape.io.webservice-biomart-client [org.cytoscape.io.webservice.biomart] [INFO] Selected quality profile : [name=Cytoscape,language=java] [INFO] Configure maven plugins... [INFO] Sensor JavaSourceImporter... [INFO] Sensor JavaSourceImporter done: 519 ms [INFO] Sensor AsynchronousMeasuresSensor... [INFO] Sensor AsynchronousMeasuresSensor done: 31 ms [INFO] Sensor SquidSensor... [INFO] Java AST scan... [INFO] Java AST scan done: 499 ms [INFO] Java bytecode scan... [WARN] Class 'org/cytoscape/io/webservice/biomart/ui/AttributeImportPanel$4' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/webservice/biomart/ui/AttributeImportPanel$3' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/webservice/biomart/ui/AttributeImportPanel$2' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/webservice/biomart/ui/AttributeImportPanel$1' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/webservice/biomart/ui/AttributeImportPanel$5' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/webservice/biomart/task/ShowBiomartGUIAction' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/webservice/biomart/ui/BiomartAttrMappingPanel$SourceType' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/webservice/biomart/ui/CheckBoxJList' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/webservice/biomart/ui/BiomartAttrMappingPanel' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/webservice/biomart/BiomartClient' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/webservice/biomart/ui/AttributeImportPanel' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/webservice/biomart/BiomartClient' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/webservice/biomart/ui/CheckBoxJList$CheckBoxListCellRenderer' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/webservice/biomart/ui/BiomartAttrMappingPanel' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/webservice/biomart/task/BioMartTaskFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/webservice/biomart/ui/AttributeImportPanel$4' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/webservice/biomart/ui/AttributeImportPanel$3' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/webservice/biomart/ui/AttributeImportPanel$2' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/webservice/biomart/ui/AttributeImportPanel$1' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/webservice/biomart/ui/AttributeImportPanel$5' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/webservice/biomart/task/ShowBiomartGUIAction' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/webservice/biomart/ui/BiomartAttrMappingPanel$SourceType' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/webservice/biomart/ui/CheckBoxJList' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/webservice/biomart/ui/AttributeImportPanel' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/webservice/biomart/BiomartClient' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/webservice/biomart/ui/CheckBoxJList$CheckBoxListCellRenderer' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/webservice/biomart/ui/BiomartAttrMappingPanel' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/webservice/biomart/task/BioMartTaskFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/webservice/biomart/ui/AttributeImportPanel$4' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/webservice/biomart/ui/AttributeImportPanel$3' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/webservice/biomart/ui/AttributeImportPanel$2' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/webservice/biomart/ui/AttributeImportPanel$1' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/webservice/biomart/ui/AttributeImportPanel$5' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/webservice/biomart/task/ShowBiomartGUIAction' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/webservice/biomart/ui/BiomartAttrMappingPanel$SourceType' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/webservice/biomart/ui/CheckBoxJList' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/webservice/biomart/ui/AttributeImportPanel' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/webservice/biomart/BiomartClient' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/webservice/biomart/ui/CheckBoxJList$CheckBoxListCellRenderer' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/webservice/biomart/ui/BiomartAttrMappingPanel' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/webservice/biomart/task/BioMartTaskFactory' is not accessible through the ClassLoader. [INFO] Java bytecode scan done: 159 ms [INFO] Squid extraction... [INFO] Package design analysis... [INFO] Package design analysis done: 16 ms [INFO] Squid extraction done: 530 ms [INFO] Sensor SquidSensor done: 1255 ms [INFO] Sensor FindbugsSensor... [INFO] Execute Findbugs 1.3.9... [INFO] Findbugs output report: <http://cytoscape.wodaklab.org/hudson/job/BioMart%20Web%20Service%20Client/ws/trunk/target/sonar/findbugs-result.xml> The following classes needed for analysis were missing: org.cytoscape.io.webservice.biomart.BiomartClient org.cytoscape.io.webservice.biomart.ui.BiomartAttrMappingPanel [INFO] Execute Findbugs 1.3.9 done: 7526 ms [INFO] Sensor FindbugsSensor done: 7721 ms [INFO] Execute maven plugin cobertura-maven-plugin... [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.io.webservice-biomart-client [org.cytoscape.io.webservice.biomart] [INFO] task-segment: [org.codehaus.mojo:cobertura-maven-plugin::cobertura] [INFO] ------------------------------------------------------------------------ [INFO] Preparing cobertura:cobertura [INFO] [resources:resources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 6 resources [INFO] [pax:compile] [INFO] Compiling 6 source files to <http://cytoscape.wodaklab.org/hudson/job/BioMart%20Web%20Service%20Client/ws/trunk/target/classes> [INFO] [recovering meta-data] [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Can not execute Sonar Embedded error: Unable to execute maven plugin Compilation failure [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 19 seconds [INFO] Finished at: Fri Jan 21 14:45:59 EST 2011 [INFO] Final Memory: 82M/776M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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