Author: kono Date: 2011-01-24 12:46:03 -0800 (Mon, 24 Jan 2011) New Revision: 23571
Added: core3/webservice-ncbi-client/trunk/osgi.bnd core3/webservice-ncbi-client/trunk/pom.xml core3/webservice-ncbi-client/trunk/src/ core3/webservice-ncbi-client/trunk/src/main/ core3/webservice-ncbi-client/trunk/src/main/java/ core3/webservice-ncbi-client/trunk/src/main/java/org/ core3/webservice-ncbi-client/trunk/src/main/java/org/cytoscape/ core3/webservice-ncbi-client/trunk/src/main/java/org/cytoscape/webservice/ core3/webservice-ncbi-client/trunk/src/main/java/org/cytoscape/webservice/ncbi/ core3/webservice-ncbi-client/trunk/src/main/java/org/cytoscape/webservice/ncbi/NCBIWebServiceClient.java core3/webservice-ncbi-client/trunk/src/main/resources/ core3/webservice-ncbi-client/trunk/src/main/resources/META-INF/ core3/webservice-ncbi-client/trunk/src/main/resources/META-INF/spring/ core3/webservice-ncbi-client/trunk/src/main/resources/META-INF/spring/bundle-context-osgi.xml core3/webservice-ncbi-client/trunk/src/main/resources/META-INF/spring/bundle-context.xml core3/webservice-ncbi-client/trunk/src/main/resources/readme.txt core3/webservice-ncbi-client/trunk/src/test/ core3/webservice-ncbi-client/trunk/src/test/java/ Log: NCBI Client project template. This one has no functionality yet. Added: core3/webservice-ncbi-client/trunk/osgi.bnd =================================================================== --- core3/webservice-ncbi-client/trunk/osgi.bnd (rev 0) +++ core3/webservice-ncbi-client/trunk/osgi.bnd 2011-01-24 20:46:03 UTC (rev 23571) @@ -0,0 +1,5 @@ +#----------------------------------------------------------------- +# Use this file to add customized Bnd instructions for the bundle +#----------------------------------------------------------------- + +Import-Package: * Added: core3/webservice-ncbi-client/trunk/pom.xml =================================================================== --- core3/webservice-ncbi-client/trunk/pom.xml (rev 0) +++ core3/webservice-ncbi-client/trunk/pom.xml 2011-01-24 20:46:03 UTC (rev 23571) @@ -0,0 +1,121 @@ +<?xml version="1.0" encoding="UTF-8"?> +<project xmlns="http://maven.apache.org/POM/4.0.0"; xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"; + xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd";> + + + <parent> + <artifactId>parent</artifactId> + <groupId>org.cytoscape</groupId> + <version>3.0.0-alpha4-SNAPSHOT</version> + </parent> + + <properties> + <bundle.symbolicName>org.cytoscape.webservice-ncbi-client</bundle.symbolicName> + <bundle.namespace>org.cytoscape.webservice.ncbi</bundle.namespace> + </properties> + + <modelVersion>4.0.0</modelVersion> + <groupId>org.cytoscape</groupId> + <artifactId>webservice-ncbi-client</artifactId> + <version>0.0.1-SNAPSHOT</version> + + <name>${bundle.symbolicName} [${bundle.namespace}]</name> + + <packaging>bundle</packaging> + + <build> + <resources> + <resource> + <directory>src/main/resources</directory> + </resource> + <!-- | example additional resource entries, useful when building Eclipse + RCP applications --> + </resources> + <plugins> + <plugin> + <groupId>org.apache.maven.plugins</groupId> + <artifactId>maven-jar-plugin</artifactId> + <executions> + <execution> + <goals> + <goal>test-jar</goal> + </goals> + </execution> + </executions> + </plugin> + <plugin> + <groupId>org.apache.maven.plugins</groupId> + <artifactId>maven-surefire-plugin</artifactId> + <configuration> + <redirectTestOutputToFile>true</redirectTestOutputToFile> + </configuration> + </plugin> + <plugin> + <groupId>org.apache.maven.plugins</groupId> + <artifactId>maven-jar-plugin</artifactId> + <executions> + <execution> + <goals> + <goal>test-jar</goal> + </goals> + </execution> + </executions> + </plugin> + <plugin> + <groupId>org.ops4j</groupId> + <artifactId>maven-pax-plugin</artifactId> + <version>1.4</version> + <!-- | enable improved OSGi compilation support for the bundle life-cycle. + | to switch back to the standard bundle life-cycle, move this setting | down + to the maven-bundle-plugin section --> + <extensions>true</extensions> + </plugin> + <plugin> + <groupId>org.apache.felix</groupId> + <artifactId>maven-bundle-plugin</artifactId> + <version>${maven-bundle-plugin.version}</version> + <!-- | the following instructions build a simple set of public/private + classes into an OSGi bundle --> + <configuration> + <instructions> + <Bundle-SymbolicName>${bundle.symbolicName}</Bundle-SymbolicName> + <Bundle-Version>${pom.version}</Bundle-Version> + <!-- | assume public classes are in the top package, and private classes + are under ".internal" --> + <Export-Package>!${bundle.namespace}.internal.*,${bundle.namespace}.*;version="${pom.version}"</Export-Package> + <Private-Package>${bundle.namespace}.internal.*</Private-Package> + <!-- | each module can override these defaults in their osgi.bnd file --> + <_include>-osgi.bnd</_include> + </instructions> + </configuration> + </plugin> + </plugins> + </build> + + <dependencies> + + <!-- Cytoscape modules --> + <dependency> + <groupId>org.cytoscape</groupId> + <artifactId>webservice-impl</artifactId> + <version>0.0.1-SNAPSHOT</version> + </dependency> + + + <!-- Testing --> + <dependency> + <groupId>junit</groupId> + <artifactId>junit</artifactId> + <version>${junit.version}</version> + <scope>test</scope> + </dependency> + <dependency> + <groupId>org.mockito</groupId> + <artifactId>mockito-all</artifactId> + <version>1.8.1</version> + <scope>test</scope> + </dependency> + + </dependencies> + +</project> Added: core3/webservice-ncbi-client/trunk/src/main/java/org/cytoscape/webservice/ncbi/NCBIWebServiceClient.java =================================================================== --- core3/webservice-ncbi-client/trunk/src/main/java/org/cytoscape/webservice/ncbi/NCBIWebServiceClient.java (rev 0) +++ core3/webservice-ncbi-client/trunk/src/main/java/org/cytoscape/webservice/ncbi/NCBIWebServiceClient.java 2011-01-24 20:46:03 UTC (rev 23571) @@ -0,0 +1,37 @@ +package org.cytoscape.webservice.ncbi; + +import java.util.Set; + +import org.cytoscape.io.webservice.NetworkImportWebServiceClient; +import org.cytoscape.io.webservice.TableImportWebServiceClient; +import org.cytoscape.io.webservice.client.AbstractWebServiceClient; +import org.cytoscape.model.CyNetwork; +import org.cytoscape.model.CyTable; +import org.cytoscape.work.TaskIterator; + +public class NCBIWebServiceClient extends AbstractWebServiceClient implements TableImportWebServiceClient, NetworkImportWebServiceClient { + + public NCBIWebServiceClient(String uri, String displayName, String description) { + super(uri, displayName, description); + // TODO Auto-generated constructor stub + } + + @Override + public TaskIterator getTaskIterator() { + // TODO Auto-generated method stub + return null; + } + + @Override + public Set<CyNetwork> getNetworks() { + // TODO Auto-generated method stub + return null; + } + + @Override + public Set<CyTable> getTables() { + // TODO Auto-generated method stub + return null; + } + +} Added: core3/webservice-ncbi-client/trunk/src/main/resources/META-INF/spring/bundle-context-osgi.xml =================================================================== --- core3/webservice-ncbi-client/trunk/src/main/resources/META-INF/spring/bundle-context-osgi.xml (rev 0) +++ core3/webservice-ncbi-client/trunk/src/main/resources/META-INF/spring/bundle-context-osgi.xml 2011-01-24 20:46:03 UTC (rev 23571) @@ -0,0 +1,8 @@ +<?xml version="1.0" encoding="UTF-8"?> +<beans xmlns="http://www.springframework.org/schema/beans"; + xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"; xmlns:osgi="http://www.springframework.org/schema/osgi"; + xsi:schemaLocation="http://www.springframework.org/schema/beans http://www.springframework.org/schema/beans/spring-beans-2.5.xsd + http://www.springframework.org/schema/osgi http://www.springframework.org/schema/osgi/spring-osgi-1.0.xsd"; + default-lazy-init="false"> + +</beans> Added: core3/webservice-ncbi-client/trunk/src/main/resources/META-INF/spring/bundle-context.xml =================================================================== --- core3/webservice-ncbi-client/trunk/src/main/resources/META-INF/spring/bundle-context.xml (rev 0) +++ core3/webservice-ncbi-client/trunk/src/main/resources/META-INF/spring/bundle-context.xml 2011-01-24 20:46:03 UTC (rev 23571) @@ -0,0 +1,25 @@ +<?xml version="1.0" encoding="UTF-8"?> +<beans xmlns="http://www.springframework.org/schema/beans"; + xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"; xmlns:aop="http://www.springframework.org/schema/aop"; + xmlns:util="http://www.springframework.org/schema/util"; + xmlns:context="http://www.springframework.org/schema/context"; + xmlns:lang="http://www.springframework.org/schema/lang"; xmlns:osgi="http://www.springframework.org/schema/osgi"; + xsi:schemaLocation=" + http://www.springframework.org/schema/beans + http://www.springframework.org/schema/beans/spring-beans-2.5.xsd + http://www.springframework.org/schema/aop + http://www.springframework.org/schema/aop/spring-aop-2.5.xsd + http://www.springframework.org/schema/util + http://www.springframework.org/schema/util/spring-util-2.5.xsd + http://www.springframework.org/schema/context + http://www.springframework.org/schema/context/spring-context-2.5.xsd + http://www.springframework.org/schema/lang http://www.springframework.org/schema/lang/spring-lang-2.5.xsd + http://www.springframework.org/schema/osgi http://www.springframework.org/schema/osgi/spring-osgi-1.0.xsd"; + default-lazy-init="false"> + + + <context:annotation-config /> + + + +</beans> Added: core3/webservice-ncbi-client/trunk/src/main/resources/readme.txt =================================================================== --- core3/webservice-ncbi-client/trunk/src/main/resources/readme.txt (rev 0) +++ core3/webservice-ncbi-client/trunk/src/main/resources/readme.txt 2011-01-24 20:46:03 UTC (rev 23571) @@ -0,0 +1 @@ +Bundle resources go here -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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