See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20View%20Model%20Impl/1479/changes>
Changes: [ruschein] Got rid of the Manager interface and added a reset() method instead. ------------------------------------------ [...truncated 7 lines...] A impl/src/test/java/org A impl/src/test/java/org/cytoscape A impl/src/test/java/org/cytoscape/view A impl/src/test/java/org/cytoscape/view/model A impl/src/test/java/org/cytoscape/view/model/CyNetworkViewTest.java A impl/src/test/java/org/cytoscape/view/model/CyNodeViewTest.java A impl/src/test/resources AU impl/src/test/resources/log4j.properties A impl/src/main A impl/src/main/java A impl/src/main/java/org A impl/src/main/java/org/cytoscape A impl/src/main/java/org/cytoscape/view A impl/src/main/java/org/cytoscape/view/model A impl/src/main/java/org/cytoscape/view/model/internal A impl/src/main/java/org/cytoscape/view/model/internal/EdgeViewImpl.java A impl/src/main/java/org/cytoscape/view/model/internal/NodeViewImpl.java A impl/src/main/java/org/cytoscape/view/model/internal/NetworkViewImpl.java A impl/src/main/java/org/cytoscape/view/model/internal/ViewImpl.java A impl/src/main/java/org/cytoscape/view/model/internal/CyNetworkViewManagerImpl.java A impl/src/main/java/org/cytoscape/view/model/internal/NetworkViewFactoryImpl.java A impl/src/main/javadoc A impl/src/main/javadoc/org A impl/src/main/javadoc/org/cytoscape A impl/src/main/javadoc/org/cytoscape/viewmodel A impl/src/main/javadoc/org/cytoscape/viewmodel/events A impl/src/main/javadoc/org/cytoscape/viewmodel/events/package.html A impl/src/main/javadoc/org/cytoscape/viewmodel/package.html A impl/src/main/resources A impl/src/main/resources/META-INF A impl/src/main/resources/META-INF/spring A impl/src/main/resources/META-INF/spring/bundle-context-osgi.xml A impl/src/main/resources/META-INF/spring/bundle-context.xml A impl/pom.xml A pom.xml A it A it/src A it/src/test A it/src/test/java A it/src/test/java/org A it/src/test/java/org/cytoscape A it/src/test/java/org/cytoscape/view A it/src/test/java/org/cytoscape/view/model A it/src/test/java/org/cytoscape/view/model/ServiceConfigurationTest.java A it/pom.xml U . At revision 23663 WARNING: clock of the subversion server appears to be out of sync. This can result in inconsistent check out behavior. No emails were triggered. Parsing POMs [INFO ] snapshot org.cytoscape:parent:3.0.0-alpha4-SNAPSHOT: checking for updates from cytoscape_snapshots [trunk] $ java -cp /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-agent-1.385.jar:/R1/tools/maven/apache-maven-2.1.0/boot/classworlds-1.1.jar hudson.maven.agent.Main /R1/tools/maven/apache-maven-2.1.0 /R1/resources/webservers/tomcat_2/webapps/hudson/WEB-INF/lib/remoting-1.385.jar /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-interceptor-1.385.jar 52682 /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven2.1-interceptor-1.2.jar <===[HUDSON REMOTING CAPACITY]===> channel started Executing Maven: -B -f <http://cytoscape.wodaklab.org/hudson/job/Cy3%20View%20Model%20Impl/ws/trunk/pom.xml> deploy [INFO] Scanning for projects... [INFO] Reactor build order: [INFO] viewmodel-impl-parent [INFO] org.cytoscape.viewmodel-impl [INFO] org.cytoscape.viewmodel-impl-it WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building viewmodel-impl-parent [INFO] task-segment: [deploy] [INFO] ------------------------------------------------------------------------ [INFO] [site:attach-descriptor] [INFO] snapshot org.cytoscape:viewmodel-api:3.0.0-alpha3-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.cytoscape:viewmodel-api:3.0.0-alpha3-SNAPSHOT: checking for updates from cytoscape_biopax_snapshot [INFO] snapshot org.cytoscape:viewmodel-api:3.0.0-alpha3-SNAPSHOT: checking for updates from spring-osgi [INFO] snapshot org.cytoscape:viewmodel-api:3.0.0-alpha3-SNAPSHOT: checking for updates from spring-osgi-snapshots [INFO] snapshot org.cytoscape:model-api:3.0.0-alpha2-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.cytoscape:model-api:3.0.0-alpha2-SNAPSHOT: checking for updates from cytoscape_biopax_snapshot [INFO] snapshot org.cytoscape:model-api:3.0.0-alpha2-SNAPSHOT: checking for updates from spring-osgi [INFO] snapshot org.cytoscape:model-api:3.0.0-alpha2-SNAPSHOT: checking for updates from spring-osgi-snapshots [INFO] [javadoc:jar {execution: attach-javadocs}] [INFO] Not executing Javadoc as the project is not a Java classpath-capable package [INFO] Preparing source:jar [WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation. [INFO] No goals needed for project - skipping [INFO] [source:jar {execution: attach-sources}] [INFO] [install:install] [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20View%20Model%20Impl/ws/trunk/target/pom-transformed.xml> to /home/bturner/.m2/repository/org/cytoscape/viewmodel-impl-parent/3.0.0-alpha2-SNAPSHOT/viewmodel-impl-parent-3.0.0-alpha2-SNAPSHOT.pom [INFO] [deploy:deploy] [INFO] Retrieving previous build number from snapshots Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/viewmodel-impl-parent/3.0.0-alpha2-SNAPSHOT/viewmodel-impl-parent-3.0.0-alpha2-20110127.190420-85.pom 3K uploaded (viewmodel-impl-parent-3.0.0-alpha2-20110127.190420-85.pom) [INFO] Retrieving previous metadata from snapshots [INFO] Uploading repository metadata for: 'snapshot org.cytoscape:viewmodel-impl-parent:3.0.0-alpha2-SNAPSHOT' [INFO] Retrieving previous metadata from snapshots [INFO] Uploading repository metadata for: 'artifact org.cytoscape:viewmodel-impl-parent' [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20View%20Model%20Impl/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 View Model Impl/modules/org.cytoscape$viewmodel-impl-parent/builds/2011-01-27_14-04-12/archive/org.cytoscape/viewmodel-impl-parent/3.0.0-alpha2-SNAPSHOT/pom.xml [HUDSON] Archiving /home/bturner/.m2/repository/org/cytoscape/viewmodel-impl-parent/3.0.0-alpha2-SNAPSHOT/viewmodel-impl-parent-3.0.0-alpha2-SNAPSHOT.pom to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 View Model Impl/modules/org.cytoscape$viewmodel-impl-parent/builds/2011-01-27_14-04-12/archive/org.cytoscape/viewmodel-impl-parent/3.0.0-alpha2-20110127.190420-85/viewmodel-impl-parent-3.0.0-alpha2-SNAPSHOT.pom [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.viewmodel-impl [INFO] task-segment: [deploy] [INFO] ------------------------------------------------------------------------ [INFO] [resources:resources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] [pax:compile] [INFO] Compiling 6 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20View%20Model%20Impl/ws/trunk/impl/target/classes> [INFO] [recovering meta-data] [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20View%20Model%20Impl/ws/trunk/impl/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 View Model Impl/modules/org.cytoscape$viewmodel-impl/builds/2011-01-27_14-04-12/archive/org.cytoscape/viewmodel-impl/3.0.0-alpha2-SNAPSHOT/pom.xml [INFO] ------------------------------------------------------------------------ [ERROR] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Compilation failure <http://cytoscape.wodaklab.org/hudson/job/Cy3%20View%20Model%20Impl/ws/trunk/impl/src/main/java/org/cytoscape/view/model/internal/CyNetworkViewManagerImpl.java>:[57,7] cannot access org.cytoscape.model.Manager class file for org.cytoscape.model.Manager not found public class CyNetworkViewManagerImpl implements CyNetworkViewManager, NetworkAboutToBeDestroyedListener { <http://cytoscape.wodaklab.org/hudson/job/Cy3%20View%20Model%20Impl/ws/trunk/impl/src/main/java/org/cytoscape/view/model/internal/CyNetworkViewManagerImpl.java>:[68,2] cannot find symbol symbol : variable this location: class org.cytoscape.view.model.internal.CyNetworkViewManagerImpl <http://cytoscape.wodaklab.org/hudson/job/Cy3%20View%20Model%20Impl/ws/trunk/impl/src/main/java/org/cytoscape/view/model/internal/CyNetworkViewManagerImpl.java>:[71,1] method does not override or implement a method from a supertype <http://cytoscape.wodaklab.org/hudson/job/Cy3%20View%20Model%20Impl/ws/trunk/impl/src/main/java/org/cytoscape/view/model/internal/CyNetworkViewManagerImpl.java>:[76,1] method does not override or implement a method from a supertype <http://cytoscape.wodaklab.org/hudson/job/Cy3%20View%20Model%20Impl/ws/trunk/impl/src/main/java/org/cytoscape/view/model/internal/CyNetworkViewManagerImpl.java>:[83,1] method does not override or implement a method from a supertype <http://cytoscape.wodaklab.org/hudson/job/Cy3%20View%20Model%20Impl/ws/trunk/impl/src/main/java/org/cytoscape/view/model/internal/CyNetworkViewManagerImpl.java>:[88,1] method does not override or implement a method from a supertype <http://cytoscape.wodaklab.org/hudson/job/Cy3%20View%20Model%20Impl/ws/trunk/impl/src/main/java/org/cytoscape/view/model/internal/CyNetworkViewManagerImpl.java>:[93,1] method does not override or implement a method from a supertype <http://cytoscape.wodaklab.org/hudson/job/Cy3%20View%20Model%20Impl/ws/trunk/impl/src/main/java/org/cytoscape/view/model/internal/CyNetworkViewManagerImpl.java>:[105,16] cannot find symbol symbol : variable this location: class org.cytoscape.view.model.internal.CyNetworkViewManagerImpl <http://cytoscape.wodaklab.org/hudson/job/Cy3%20View%20Model%20Impl/ws/trunk/impl/src/main/java/org/cytoscape/view/model/internal/CyNetworkViewManagerImpl.java>:[112,77] cannot find symbol symbol : variable this location: class org.cytoscape.view.model.internal.CyNetworkViewManagerImpl <http://cytoscape.wodaklab.org/hudson/job/Cy3%20View%20Model%20Impl/ws/trunk/impl/src/main/java/org/cytoscape/view/model/internal/CyNetworkViewManagerImpl.java>:[117,67] cannot find symbol symbol : variable this location: class org.cytoscape.view.model.internal.CyNetworkViewManagerImpl <http://cytoscape.wodaklab.org/hudson/job/Cy3%20View%20Model%20Impl/ws/trunk/impl/src/main/java/org/cytoscape/view/model/internal/CyNetworkViewManagerImpl.java>:[98,1] method does not override or implement a method from a supertype <http://cytoscape.wodaklab.org/hudson/job/Cy3%20View%20Model%20Impl/ws/trunk/impl/src/main/java/org/cytoscape/view/model/internal/CyNetworkViewManagerImpl.java>:[128,16] cannot find symbol symbol : variable this location: class org.cytoscape.view.model.internal.CyNetworkViewManagerImpl <http://cytoscape.wodaklab.org/hudson/job/Cy3%20View%20Model%20Impl/ws/trunk/impl/src/main/java/org/cytoscape/view/model/internal/CyNetworkViewManagerImpl.java>:[134,63] cannot find symbol symbol : variable this location: class org.cytoscape.view.model.internal.CyNetworkViewManagerImpl <http://cytoscape.wodaklab.org/hudson/job/Cy3%20View%20Model%20Impl/ws/trunk/impl/src/main/java/org/cytoscape/view/model/internal/CyNetworkViewManagerImpl.java>:[120,1] method does not override or implement a method from a supertype [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 10 seconds [INFO] Finished at: Thu Jan 27 14:04:24 EST 2011 [INFO] Final Memory: 64M/714M [INFO] ------------------------------------------------------------------------ Sending e-mails to: [email protected] channel stopped [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... [INFO] Reactor build order: [INFO] viewmodel-impl-parent [INFO] org.cytoscape.viewmodel-impl [INFO] org.cytoscape.viewmodel-impl-it WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building viewmodel-impl-parent [INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar] [INFO] Sonar host: http://localhost:8021/sonar [INFO] Sonar version: 2.4 [INFO] snapshot org.cytoscape:model-impl:3.0.0-alpha2-SNAPSHOT: checking for updates from spring-osgi [INFO] snapshot org.cytoscape:model-impl-parent:3.0.0-alpha2-SNAPSHOT: checking for updates from spring-osgi [INFO] snapshot org.cytoscape:service-util:3.0.0-alpha2-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.cytoscape:service-util:3.0.0-alpha2-SNAPSHOT: checking for updates from cytoscape_biopax_snapshot [INFO] snapshot org.cytoscape:service-util:3.0.0-alpha2-SNAPSHOT: checking for updates from spring-osgi [INFO] snapshot org.cytoscape:service-util:3.0.0-alpha2-SNAPSHOT: checking for updates from spring-osgi-snapshots [INFO] snapshot org.cytoscape:event-impl:3.0.0-alpha2-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.cytoscape:event-impl:3.0.0-alpha2-SNAPSHOT: checking for updates from cytoscape_biopax_snapshot [INFO] snapshot org.cytoscape:event-impl:3.0.0-alpha2-SNAPSHOT: checking for updates from spring-osgi [INFO] snapshot org.cytoscape:event-impl:3.0.0-alpha2-SNAPSHOT: checking for updates from spring-osgi-snapshots [INFO] snapshot org.cytoscape:event-impl-parent:3.0.0-alpha2-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.cytoscape:event-impl-parent:3.0.0-alpha2-SNAPSHOT: checking for updates from cytoscape_biopax_snapshot [INFO] snapshot org.cytoscape:event-impl-parent:3.0.0-alpha2-SNAPSHOT: checking for updates from spring-osgi [INFO] snapshot org.cytoscape:event-impl-parent:3.0.0-alpha2-SNAPSHOT: checking for updates from spring-osgi-snapshots [INFO] snapshot org.cytoscape:integration-test-support:3.0.0-alpha3-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.cytoscape:integration-test-support:3.0.0-alpha3-SNAPSHOT: checking for updates from cytoscape_biopax_snapshot [INFO] snapshot org.cytoscape:integration-test-support:3.0.0-alpha3-SNAPSHOT: checking for updates from spring-osgi [INFO] snapshot org.cytoscape:integration-test-support:3.0.0-alpha3-SNAPSHOT: checking for updates from spring-osgi-snapshots [INFO] snapshot org.cytoscape:viewmodel-impl:3.0.0-alpha2-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.cytoscape:viewmodel-impl:3.0.0-alpha2-SNAPSHOT: checking for updates from cytoscape_biopax_snapshot [INFO] snapshot org.cytoscape:viewmodel-impl:3.0.0-alpha2-SNAPSHOT: checking for updates from spring-osgi [INFO] snapshot org.cytoscape:viewmodel-impl:3.0.0-alpha2-SNAPSHOT: checking for updates from spring-osgi-snapshots [INFO] [sonar-core:internal] [INFO] Database dialect class org.sonar.jpa.dialect.MySql [INFO] ------------- Analyzing org.cytoscape.viewmodel-impl [INFO] Selected quality profile : [name=Cytoscape,language=java] [INFO] Configure maven plugins... [INFO] Sensor JavaSourceImporter... [INFO] Sensor JavaSourceImporter done: 377 ms [INFO] Sensor AsynchronousMeasuresSensor... [INFO] Sensor AsynchronousMeasuresSensor done: 1 ms [INFO] Sensor SquidSensor... [INFO] Java AST scan... [INFO] Java AST scan done: 354 ms [INFO] Java bytecode scan... [WARN] Class 'org/cytoscape/view/model/internal/EdgeViewImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/model/internal/ViewImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/model/internal/NetworkViewImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/model/internal/NetworkViewFactoryImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/model/internal/CyNetworkViewManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/model/internal/NodeViewImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/model/internal/EdgeViewImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/model/internal/ViewImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/model/internal/NetworkViewImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/model/internal/NetworkViewFactoryImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/model/internal/CyNetworkViewManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/model/internal/NodeViewImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/model/internal/EdgeViewImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/model/internal/ViewImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/model/internal/NetworkViewImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/model/internal/NetworkViewFactoryImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/model/internal/CyNetworkViewManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/model/internal/NodeViewImpl' is not accessible through the ClassLoader. [INFO] Java bytecode scan done: 26 ms [INFO] Squid extraction... [INFO] Package design analysis... [INFO] Package design analysis done: 7 ms [INFO] Squid extraction done: 222 ms [INFO] Sensor SquidSensor done: 646 ms [INFO] Sensor FindbugsSensor... [INFO] Execute Findbugs 1.3.9... [INFO] Findbugs output report: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20View%20Model%20Impl/ws/trunk/impl/target/sonar/findbugs-result.xml> [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Can not execute Sonar Embedded error: Can not execute Findbugs No classes found to analyze in <http://cytoscape.wodaklab.org/hudson/job/Cy3%20View%20Model%20Impl/ws/trunk/impl/target/classes> */R1/resources/M2_MAVEN/repository/org/cytoscape/viewmodel-api/3.0.0-alpha3-SNAPSHOT/viewmodel-api-3.0.0-alpha3-SNAPSHOT.jar */R1/resources/M2_MAVEN/repository/org/cytoscape/model-api/3.0.0-alpha2-SNAPSHOT/model-api-3.0.0-alpha2-SNAPSHOT.jar */R1/resources/M2_MAVEN/repository/org/cytoscape/event-api/3.0.0-alpha2-SNAPSHOT/event-api-3.0.0-alpha2-SNAPSHOT.jar */R1/resources/M2_MAVEN/repository/org/cytoscape/service-util/3.0.0-alpha1/service-util-3.0.0-alpha1.jar */R1/resources/M2_MAVEN/repository/org/ops4j/pax/logging/pax-logging-api/1.5.2/pax-logging-api-1.5.2.jar */tmp/findbugs2015471828220565277.jar */tmp/findbugs5547325276521277385.jar */R1/tools/java/jdk1.6.0_20/jre/lib/resources.jar */R1/tools/java/jdk1.6.0_20/jre/lib/rt.jar */R1/tools/java/jdk1.6.0_20/jre/lib/jsse.jar */R1/tools/java/jdk1.6.0_20/jre/lib/jce.jar */R1/tools/java/jdk1.6.0_20/jre/lib/charsets.jar */R1/tools/java/jdk1.6.0_20/jre/lib/ext/dnsns.jar */R1/tools/java/jdk1.6.0_20/jre/lib/ext/localedata.jar */R1/tools/java/jdk1.6.0_20/jre/lib/ext/sunjce_provider.jar */R1/tools/java/jdk1.6.0_20/jre/lib/ext/sunpkcs11.jar [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 13 seconds [INFO] Finished at: Thu Jan 27 14:04:49 EST 2011 [INFO] Final Memory: 46M/594M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/cytoscape-cvs?hl=en.
