Author: kono
Date: 2011-01-28 15:44:51 -0800 (Fri, 28 Jan 2011)
New Revision: 23850

Modified:
   new_cytoscape_website/trunk/
   new_cytoscape_website/trunk/css/main.css
   new_cytoscape_website/trunk/css/navigation.css
   new_cytoscape_website/trunk/documentation_users.html
   new_cytoscape_website/trunk/index.html
   new_cytoscape_website/trunk/js/footer.js
   new_cytoscape_website/trunk/js/menu_generator.js
Log:
Updated based on comments by Alex and Trey.


Property changes on: new_cytoscape_website/trunk
___________________________________________________________________
Name: svn:ignore
   + _notes
.project


Modified: new_cytoscape_website/trunk/css/main.css
===================================================================
--- new_cytoscape_website/trunk/css/main.css    2011-01-28 23:44:46 UTC (rev 
23849)
+++ new_cytoscape_website/trunk/css/main.css    2011-01-28 23:44:51 UTC (rev 
23850)
@@ -67,8 +67,6 @@
 #header .title {
        float:left;
        position:relative;
-       
-       
 }
 
 #header .title h1 {
@@ -314,6 +312,7 @@
        News internal frame
 */
 .news {
+       float:right !important;
        width:695px;
        height:660px;
        margin-top:0;
@@ -770,7 +769,7 @@
        Top page components: citation funcing agencies
 
 */
-#cite, #funding {
+#cite, #members, #funding, #help {
        float:left;
        width:220px;
        margin:5px 0 2px 0;
@@ -808,13 +807,13 @@
        font-size:14px !important;
 }
 
-#funding .institute {
+#funding .institute, #members .institute {
        margin:25px 10px 15px;
+       float:none;
 }
 
-#funding .title {
+#funding .title, #members .title, #help .title {
        font-size:16px;
        line-height:25px;
        margin:15px 20px;
-}
-
+}
\ No newline at end of file

Modified: new_cytoscape_website/trunk/css/navigation.css
===================================================================
--- new_cytoscape_website/trunk/css/navigation.css      2011-01-28 23:44:46 UTC 
(rev 23849)
+++ new_cytoscape_website/trunk/css/navigation.css      2011-01-28 23:44:51 UTC 
(rev 23850)
@@ -36,6 +36,8 @@
 }
 
 
+
+
 /* main level link */
 #nav a {
        font-weight: bold;
@@ -121,6 +123,10 @@
        text-shadow: 0 1px 1px rgba(255, 255, 255, .9);
 }
 
+#nav #helpMenu a {
+       color:#F00 !important;
+}
+
 /* level 3+ list */
 #nav ul ul {
        left: 181px;

Modified: new_cytoscape_website/trunk/documentation_users.html
===================================================================
--- new_cytoscape_website/trunk/documentation_users.html        2011-01-28 
23:44:46 UTC (rev 23849)
+++ new_cytoscape_website/trunk/documentation_users.html        2011-01-28 
23:44:51 UTC (rev 23850)
@@ -66,7 +66,7 @@
     <div class="blockright"> <img 
src="images/icon/Gnome-Dialog-Question-64.png" />
       <h2>Getting Help</h2>
       <br />
-      <p> <strong>Still cannot find answer for your question?  Ask your 
question in the <a href="">mailing list</a>.</strong> </p>
+      <p> <strong>Still cannot find answer for your question?  Ask your 
question in the <a href="community.html">mailing list</a>.</strong> </p>
       <br />
       <div class="important">
         <h3>Tips for Asking Questions</h3>

Modified: new_cytoscape_website/trunk/index.html
===================================================================
--- new_cytoscape_website/trunk/index.html      2011-01-28 23:44:46 UTC (rev 
23849)
+++ new_cytoscape_website/trunk/index.html      2011-01-28 23:44:51 UTC (rev 
23850)
@@ -151,8 +151,8 @@
           <a href="http://www.genome.org/cgi/content/full/13/11/2498";> 
[Abstract] </a> <a href="http://www.genome.org/cgi/reprint/13/11/2498";> [PDF] 
</a> <a 
href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgicmd=Retrieve&amp;db=PubMed&amp;list_uids=14597658&amp;dopt=Abstract";>
 [PubMed entry]</a> </div>
       </div>
       
-     
       
+      
       <!-- Where to start -->
       <div class="startnav" id="start">
         <h2>What Can You Do With Cytoscape?</h2>
@@ -307,38 +307,43 @@
       
       
       
+      
       <!-- News 1: Tumblr -->
       <div class="news">
        <h3>Featured News<a href="http://cytoscape.tumblr.com/"; 
target="_top"><img src="images/icon/tumblr.png"/></a></h3>
-       
         <iframe id="frame" src="news_tumblr.html" height="590" width="700" 
frameborder="0" scrolling="auto"> </iframe>
-      </div>
+      </div>  
       
-      
       <!-- Funding Agency -->
       <div id="funding">
-       <div class="title">Cytoscape Project is a Member of <strong>National 
Resource for Network Biology</strong></div>
-       <div class="institute"><a href="http://nrnb.org/";><img 
src="images/logo/nrnb_logo.png" /></a></div>
-       
-       <div class="title">Consortium Members and Funding Agencies</div>
-        <div class="institute"><a href="http://www.home.agilent.com";><img 
width="200" src="images/logo/agilent_logo_web.png" /></a></div>
-        <div class="institute"><a href="http://www.utoronto.ca/";><img 
width="200" src="images/logo/toronto_logo_web.png" /></a></div>
-        <div class="institute"><a href="http://www.ucsf.edu/";><img width="200" 
src="images/logo/ucsf_logo_web.png" /></a></div>
-        <div class="institute"><a href="http://www.pasteur.fr";><img 
width="200" src="images/logo/pasteur_logo_web.png" /></a></div>
-        <div class="institute"><a href="http://www.mskcc.org";><img width="200" 
src="images/logo/mskcc_logo_web.png" /></a></div>
-       <div class="institute"><a href="http://www.ucsd.edu/";><img width="200" 
src="images/logo/ucsd_logo_web.png" /></a></div>
-        <div class="institute"><a href="http://www.systemsbiology.org/";><img 
width="200" src="images/logo/isb_logo_web.png" /></a></div>
+       <div class="title">Cytoscape Project is supported by <strong>National 
Resource for Network Biology</strong></div>
+       <div class="institute"><a href="http://nrnb.org/";><img 
src="images/logo/nrnb_logo.png" /></a></div> 
         <div class="institute"><a 
href="http://www.ncrr.nih.gov/index.asp";><img width="200" 
src="http://www.ncrr.nih.gov/images/home/top_banner.gif"; /></a></div>
         <div class="institute"><a href="http://www.nigms.nih.gov/";><img 
width="200" src="https://workshop.nigms.nih.gov/images/nigms_logo.gif"; 
/></a></div>      
          </div>
       
-      <div class="news">
+       <div class="news">
        <h2>Cytoscape News Feeds by <a 
href="http://friendfeed.com/cytoscape";>FriendFeed</a></h2>
         
         <script type="text/javascript" 
src="http://friendfeed.com/embed/widget/cytoscape?v=3&amp;hide_logo=1&amp;num=7&amp;hide_comments_likes=1&amp;width=700";></script>
         <noscript><a href="http://friendfeed.com/cytoscape";>
         <img alt="View my FriendFeed" style="border:none;" 
src="http://friendfeed.com/embed/widget/cytoscape?v=3&amp;hide_logo=1&amp;hide_comments_likes=1&amp;num=7&amp;width=700&amp;format=png"/></a></noscript>
       </div>
+      
+      <!--Consortium Members -->
+      <div id="members">
+       <div class="title">Consortium Members</div>
+        <div class="institute"><a href="http://www.home.agilent.com";><img 
width="200" src="images/logo/agilent_logo_web.png" /></a></div>
+        <div class="institute"><a href="http://www.utoronto.ca/";><img 
width="200" src="images/logo/toronto_logo_web.png" /></a></div>
+        <div class="institute"><a href="http://www.ucsf.edu/";><img width="200" 
src="images/logo/ucsf_logo_web.png" /></a></div>
+        <div class="institute"><a href="http://www.pasteur.fr";><img 
width="200" src="images/logo/pasteur_logo_web.png" /></a></div>
+        <div class="institute"><a href="http://www.mskcc.org";><img width="200" 
src="images/logo/mskcc_logo_web.png" /></a></div>
+       <div class="institute"><a href="http://www.ucsd.edu/";><img width="200" 
src="images/logo/ucsd_logo_web.png" /></a></div>
+        <div class="institute"><a href="http://www.systemsbiology.org/";><img 
width="200" src="images/logo/isb_logo_web.png" /></a></div>
+      </div>
+      
+      
+      
       <script src="js/footer.js"></script> 
     </div>
 </body>

Modified: new_cytoscape_website/trunk/js/footer.js
===================================================================
--- new_cytoscape_website/trunk/js/footer.js    2011-01-28 23:44:46 UTC (rev 
23849)
+++ new_cytoscape_website/trunk/js/footer.js    2011-01-28 23:44:51 UTC (rev 
23850)
@@ -3,7 +3,8 @@
        '<div id="footer"><p>' +
        'Funding for Cytoscape is provided by a federal grant from <a 
href="http://www.ncrr.nih.gov/index.asp";>' +
        'National Center for Research Resources (NCRR)</a> ' +
-       'and the U.S. <a href="http://www.nigms.nih.gov";>National Institute of 
General Medical Sciences (NIGMS)</a> ' +
+       ', <a href="http://nrnb.org";>National Resource for Network Biology 
(NRNB)</a> RR031228,' +
+       ' and the U.S. <a href="http://www.nigms.nih.gov";>National Institute of 
General Medical Sciences (NIGMS)</a> ' +
        'of the <a href="http://www.nih.gov";>National Institutes of Health 
(NIH)</a> under award ' +
        'number GM070743.</p>' +
        '<p>&copy;2001-2010 Cytoscape Consotrium</p></div>' +

Modified: new_cytoscape_website/trunk/js/menu_generator.js
===================================================================
--- new_cytoscape_website/trunk/js/menu_generator.js    2011-01-28 23:44:46 UTC 
(rev 23849)
+++ new_cytoscape_website/trunk/js/menu_generator.js    2011-01-28 23:44:51 UTC 
(rev 23850)
@@ -57,6 +57,7 @@
        $("#nav").append("<li id=\"documentMenu\"><a 
href=\"#\">Documentation</a></li>");
        $("#nav").append("<li id=\"communityMenu\"><a 
href=\"#\">Community</a></li>");
        $("#nav").append("<li id=\"bugMenu\"><a 
href=\"http://cbio.mskcc.org/cytoscape/bugs/my_view_page.php\";>Report a 
Bug</a></li>");
+       $("#nav").append("<li id=\"helpMenu\"><a 
href=\"http://www.cytoscape.org/community.html\";>Getting Help</a></li>");
 }
 
 function appendIntro() {

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