See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/1947/changes>
Changes: [ruschein] Created a new CyColumn class. ------------------------------------------ [...truncated 479 lines...] [WARN] Class 'org/cytoscape/io/internal/read/expression/mRNAMeasurement' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/CyTableReaderManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/HandlerFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/AbstractCyNetworkViewWriterFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/CyFileFilterImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleComplexAttributeDone' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/session/SessionWriterFactoryImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/cysession/CysessionFileFilter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleRDFType' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/ObjectTypeMap' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleNodeGraphics' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleGroup' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleRDFTitle' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleRDF' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeHandleList' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/GenericReaderManager' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/MarkSupportedInputStream' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/expression/ExpressionData' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/CopyInputStream' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/XGMMLParser' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/sif/SifWriter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/XGMMLFileFilter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleEdge' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleNode' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleRDFSource' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleGraphDone' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/cysession/CysessionReaderFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/graphics/BitmapWriterFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/XGMMLNetworkViewReaderFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleNodeAttribute' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/gml/GMLNetworkViewReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/CyNetworkViewReaderManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleGroupDone' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/MetadataParser' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleRDFIdentifier' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/AbstractPropertyWriterFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeHandleDone' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/bookmarks/BookmarkFileFilter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/CyTableWriterManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/graphics/BitmapWriter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/PropertyWriterManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/sif/SIFNetworkViewReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/xgmml/XGMMLNetworkViewWriterFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/graphics/PDFExporter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/Handler' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/bookmarks/BookmarkReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/bookmarks/BookmarkReaderFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/SAXState' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/datatable/TextDataTableReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/AttributeValueUtil' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/cysession/CysessionWriterFactoryImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/graphics/Exporter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/sif/Interaction' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/session/SessionReaderImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/util/ReadUtils' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/RDFTags' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleMapAttributeDone' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/properties/PropertiesReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/gml/GMLNetworkViewReaderFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeAttribute' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/AbstractNetworkViewReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/gml/KeyValue' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/AbstractPropertyReaderFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/CyNetworkViewWriterManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/GraphicsConverter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/properties/PropertiesWriterImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/PresentationWriterManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleRDFFormat' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/sif/SifNetworkWriterFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/ParseState' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/bookmarks/BookmarksWriterFactoryImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/session/SessionReaderFactoryImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/CyPropertyReaderManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/AbstractHandler' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/ObjectType' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/session/SessionWriterImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/gml/GMLParser' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/sif/SIFNetworkViewReaderFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleRDFDescription' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/xgmml/ObjectType' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/XGMMLNetworkViewReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleNetworkAttribute' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/gml/GMLParser$FilterNewlineReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/properties/PropertiesWriterFactoryImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/xgmml/GraphicsType' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/AbstractPropertyReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/graphics/SVGExporter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleRDFDate' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/xgmml/XGMMLWriter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleComplexAttribute' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeHandle' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/cysession/CysessionReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/AbstractNetworkViewReaderFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/util/StreamUtilImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleGroupNode' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/cysession/CysessionWriterImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/AbstractTableReaderFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/VisualStyleBuilder' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/datatable/TextDataTableReaderFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/properties/PropertiesFileFilter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/properties/PropertiesReaderFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeGraphics' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleMapAttribute' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/graphics/PSExporter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/CySessionReaderManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/SessionWriterManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/AbstractWriterManager' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/ReadDataManager' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/MetadataEntries' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/bookmarks/BookmarksWriterImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/gml/GMLFileFilter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/AbstractTableReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/datatable/CyAttributesReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleGraph' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleListAttributeDone' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleListAttribute' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/datatable/CyAttributesReaderFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/expression/mRNAMeasurement' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/CyTableReaderManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/HandlerFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/AbstractCyNetworkViewWriterFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/CyFileFilterImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleComplexAttributeDone' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/session/SessionWriterFactoryImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/cysession/CysessionFileFilter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleRDFType' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/ObjectTypeMap' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleNodeGraphics' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleGroup' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleRDFTitle' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleRDF' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeHandleList' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/GenericReaderManager' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/MarkSupportedInputStream' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/expression/ExpressionData' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/CopyInputStream' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/XGMMLParser' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/sif/SifWriter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/XGMMLFileFilter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleEdge' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleNode' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleRDFSource' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleGraphDone' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/cysession/CysessionReaderFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/graphics/BitmapWriterFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/XGMMLNetworkViewReaderFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleNodeAttribute' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/gml/GMLNetworkViewReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/CyNetworkViewReaderManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleGroupDone' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/MetadataParser' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleRDFIdentifier' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/AbstractPropertyWriterFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeHandleDone' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/bookmarks/BookmarkFileFilter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/CyTableWriterManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/graphics/BitmapWriter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/PropertyWriterManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/sif/SIFNetworkViewReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/xgmml/XGMMLNetworkViewWriterFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/graphics/PDFExporter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/Handler' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/bookmarks/BookmarkReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/bookmarks/BookmarkReaderFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/SAXState' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/datatable/TextDataTableReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/AttributeValueUtil' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/cysession/CysessionWriterFactoryImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/graphics/Exporter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/sif/Interaction' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/session/SessionReaderImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/util/ReadUtils' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/RDFTags' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleMapAttributeDone' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/properties/PropertiesReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/gml/GMLNetworkViewReaderFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeAttribute' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/AbstractNetworkViewReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/gml/KeyValue' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/AbstractPropertyReaderFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/CyNetworkViewWriterManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/GraphicsConverter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/properties/PropertiesWriterImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/PresentationWriterManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleRDFFormat' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/sif/SifNetworkWriterFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/ParseState' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/bookmarks/BookmarksWriterFactoryImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/session/SessionReaderFactoryImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/CyPropertyReaderManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/AbstractHandler' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/ObjectType' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/session/SessionWriterImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/gml/GMLParser' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/sif/SIFNetworkViewReaderFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleRDFDescription' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/xgmml/ObjectType' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/XGMMLNetworkViewReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleNetworkAttribute' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/gml/GMLParser$FilterNewlineReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/properties/PropertiesWriterFactoryImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/xgmml/GraphicsType' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/AbstractPropertyReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/graphics/SVGExporter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleRDFDate' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/xgmml/XGMMLWriter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleComplexAttribute' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeHandle' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/cysession/CysessionReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/AbstractNetworkViewReaderFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/util/StreamUtilImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleGroupNode' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/cysession/CysessionWriterImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/AbstractTableReaderFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/VisualStyleBuilder' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/datatable/TextDataTableReaderFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/properties/PropertiesFileFilter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/properties/PropertiesReaderFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeGraphics' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/HandleMapAttribute' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/graphics/PSExporter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/CySessionReaderManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/SessionWriterManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/write/AbstractWriterManager' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/handler/ReadDataManager' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/io/internal/read/xgmml/MetadataEntries' is not accessible through the ClassLoader. [INFO] Java bytecode scan done: 146 ms [INFO] Squid extraction... [INFO] Package design analysis... [INFO] Package design analysis done: 10 ms [INFO] Squid extraction done: 2190 ms [INFO] Sensor SquidSensor done: 3538 ms [INFO] Sensor FindbugsSensor... [INFO] Execute Findbugs 1.3.9... [INFO] Findbugs output report: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/target/sonar/findbugs-result.xml> [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Can not execute Sonar Embedded error: Can not execute Findbugs No classes found to analyze in <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/target/classes> */R1/resources/M2_MAVEN/repository/org/cytoscape/layout-api/3.0.0-alpha2-SNAPSHOT/layout-api-3.0.0-alpha2-SNAPSHOT.jar */R1/resources/M2_MAVEN/repository/org/cytoscape/presentation-api/3.0.0-alpha2/presentation-api-3.0.0-alpha2.jar */R1/resources/M2_MAVEN/repository/org/cytoscape/viewmodel-api/3.0.0-alpha3/viewmodel-api-3.0.0-alpha3.jar */R1/resources/M2_MAVEN/repository/org/cytoscape/model-api/3.0.0-alpha3-SNAPSHOT/model-api-3.0.0-alpha3-SNAPSHOT.jar */R1/resources/M2_MAVEN/repository/org/cytoscape/event-api/3.0.0-alpha3/event-api-3.0.0-alpha3.jar */R1/resources/M2_MAVEN/repository/org/cytoscape/core-task-api/3.0.0-alpha2/core-task-api-3.0.0-alpha2.jar */R1/resources/M2_MAVEN/repository/org/cytoscape/work-api/3.0.0-alpha1/work-api-3.0.0-alpha1.jar */R1/resources/M2_MAVEN/repository/org/cytoscape/session-api/3.0.0-alpha2/session-api-3.0.0-alpha2.jar */R1/resources/M2_MAVEN/repository/org/cytoscape/vizmap-api/3.0.0-alpha2/vizmap-api-3.0.0-alpha2.jar */R1/resources/M2_MAVEN/repository/org/cytoscape/property-api/3.0.0-alpha2/property-api-3.0.0-alpha2.jar */R1/resources/M2_MAVEN/repository/org/cytoscape/io-api/3.0.0-alpha2/io-api-3.0.0-alpha2.jar */R1/resources/M2_MAVEN/repository/org/ops4j/pax/logging/pax-logging-api/1.5.2/pax-logging-api-1.5.2.jar */R1/resources/M2_MAVEN/repository/org/cytoscape/default-mappings/3.0.0-alpha1/default-mappings-3.0.0-alpha1.jar */R1/resources/M2_MAVEN/repository/com/lowagie/text/com.springsource.com.lowagie.text/2.0.8/com.springsource.com.lowagie.text-2.0.8.jar */R1/resources/M2_MAVEN/repository/com/sun/xml/bind/jaxb-impl/2.2.1/jaxb-impl-2.2.1.jar */R1/resources/M2_MAVEN/repository/javax/xml/bind/jaxb-api/2.2.1/jaxb-api-2.2.1.jar */R1/resources/M2_MAVEN/repository/javax/xml/stream/stax-api/1.0-2/stax-api-1.0-2.jar */R1/resources/M2_MAVEN/repository/javax/activation/activation/1.1/activation-1.1.jar */tmp/findbugs3104192785602481256.jar */tmp/findbugs4674338473221792861.jar */R1/tools/java/jdk1.6.0_20/jre/lib/resources.jar */R1/tools/java/jdk1.6.0_20/jre/lib/rt.jar */R1/tools/java/jdk1.6.0_20/jre/lib/jsse.jar */R1/tools/java/jdk1.6.0_20/jre/lib/jce.jar */R1/tools/java/jdk1.6.0_20/jre/lib/charsets.jar */R1/tools/java/jdk1.6.0_20/jre/lib/ext/dnsns.jar */R1/tools/java/jdk1.6.0_20/jre/lib/ext/localedata.jar */R1/tools/java/jdk1.6.0_20/jre/lib/ext/sunjce_provider.jar */R1/tools/java/jdk1.6.0_20/jre/lib/ext/sunpkcs11.jar [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 16 seconds [INFO] Finished at: Mon Jan 31 19:21:48 EST 2011 [INFO] Final Memory: 46M/591M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/cytoscape-cvs?hl=en.
