See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/150/changes>
Changes: [ruschein] Created a new CyColumn class. ------------------------------------------ Started by an SCM change Checking out http://chianti.ucsd.edu/svn/core3/sbml-impl/trunk A osgi.bnd A src A src/test A src/test/java A src/test/java/org A src/test/java/org/cytoscape A src/test/java/org/cytoscape/sbml A src/test/java/org/cytoscape/sbml/internal AU src/test/java/org/cytoscape/sbml/internal/SBMLFileFilterTest.java AU src/test/java/org/cytoscape/sbml/internal/SBMLNetworkViewReaderTest.java A src/test/resources AU src/test/resources/BIOMD0000000003.xml A src/main A src/main/java A src/main/java/org A src/main/java/org/cytoscape A src/main/java/org/cytoscape/sbml A src/main/java/org/cytoscape/sbml/internal AU src/main/java/org/cytoscape/sbml/internal/SBMLFileFilter.java AU src/main/java/org/cytoscape/sbml/internal/SBMLNetworkViewReader.java AU src/main/java/org/cytoscape/sbml/internal/SBMLNetworkViewTaskFactory.java A src/main/resources AU pom.xml U . At revision 23985 No emails were triggered. Parsing POMs [trunk] $ java -cp /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-agent-1.385.jar:/R1/tools/maven/apache-maven-2.1.0/boot/classworlds-1.1.jar hudson.maven.agent.Main /R1/tools/maven/apache-maven-2.1.0 /R1/resources/webservers/tomcat_2/webapps/hudson/WEB-INF/lib/remoting-1.385.jar /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-interceptor-1.385.jar 50674 /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven2.1-interceptor-1.2.jar <===[HUDSON REMOTING CAPACITY]===> channel started Executing Maven: -B -f <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/ws/trunk/pom.xml> deploy [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.sbml-impl [org.cytoscape.sbml] [INFO] task-segment: [deploy] [INFO] ------------------------------------------------------------------------ [INFO] [resources:resources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/parent/3.0.0-alpha4-SNAPSHOT/parent-3.0.0-alpha4-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:parent:pom:3.0.0-alpha4-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/parent/3.0.0-alpha4-SNAPSHOT/parent-3.0.0-alpha4-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:parent:pom:3.0.0-alpha4-SNAPSHOT' in repository cytoscape_biopax_snapshot (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external//org/cytoscape/parent/3.0.0-alpha4-SNAPSHOT/parent-3.0.0-alpha4-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:parent:pom:3.0.0-alpha4-SNAPSHOT' in repository spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external/) [INFO] [pax:compile] [INFO] Compiling 3 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/ws/trunk/target/classes> [INFO] [recovering meta-data] [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 SBML Impl/modules/org.cytoscape$sbml-impl/builds/2011-01-31_19-24-17/archive/org.cytoscape/sbml-impl/1.0-SNAPSHOT/pom.xml [INFO] ------------------------------------------------------------------------ [ERROR] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Compilation failure <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/ws/trunk/src/main/java/org/cytoscape/sbml/internal/SBMLNetworkViewReader.java>:[180,31] cannot find symbol symbol : method getColumn(java.lang.String) location: interface org.cytoscape.model.CyTable <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/ws/trunk/src/main/java/org/cytoscape/sbml/internal/SBMLNetworkViewReader.java>:[181,28] <T>createColumn(java.lang.String,java.lang.Class<? extends T>) in org.cytoscape.model.CyTable cannot be applied to (java.lang.String,java.lang.Class<T>,boolean) [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 6 seconds [INFO] Finished at: Mon Jan 31 19:24:25 EST 2011 [INFO] Final Memory: 51M/492M [INFO] ------------------------------------------------------------------------ Sending e-mails to: [email protected] channel stopped [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.sbml-impl [org.cytoscape.sbml] [INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar] [INFO] Sonar host: http://localhost:8021/sonar [INFO] Sonar version: 2.4 Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/parent/3.0.0-alpha4-SNAPSHOT/parent-3.0.0-alpha4-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:parent:pom:3.0.0-alpha4-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot//org/cytoscape/parent/3.0.0-alpha4-SNAPSHOT/parent-3.0.0-alpha4-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:parent:pom:3.0.0-alpha4-SNAPSHOT' in repository cytoscape_biopax_snapshot (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external//org/cytoscape/parent/3.0.0-alpha4-SNAPSHOT/parent-3.0.0-alpha4-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:parent:pom:3.0.0-alpha4-SNAPSHOT' in repository spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external/) [INFO] [sonar-core:internal] [INFO] Database dialect class org.sonar.jpa.dialect.MySql [INFO] ------------- Analyzing org.cytoscape.sbml-impl [org.cytoscape.sbml] [INFO] Selected quality profile : [name=Cytoscape,language=java] [INFO] Configure maven plugins... [INFO] Sensor JavaSourceImporter... [INFO] Sensor JavaSourceImporter done: 296 ms [INFO] Sensor AsynchronousMeasuresSensor... [INFO] Sensor AsynchronousMeasuresSensor done: 96 ms [INFO] Sensor SquidSensor... [INFO] Java AST scan... [INFO] Java AST scan done: 296 ms [INFO] Java bytecode scan... [WARN] Class 'org/cytoscape/sbml/internal/SBMLNetworkViewReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/sbml/internal/SBMLNetworkViewReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/sbml/internal/SBMLNetworkViewReader' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/sbml/internal/SBMLNetworkViewReader' is not accessible through the ClassLoader. [INFO] Java bytecode scan done: 65 ms [INFO] Squid extraction... [INFO] Package design analysis... [INFO] Package design analysis done: 6 ms [INFO] Squid extraction done: 126 ms [INFO] Sensor SquidSensor done: 534 ms [INFO] Sensor FindbugsSensor... [INFO] Execute Findbugs 1.3.9... [INFO] Findbugs output report: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/ws/trunk/target/sonar/findbugs-result.xml> The following classes needed for analysis were missing: org.cytoscape.sbml.internal.SBMLNetworkViewReader [INFO] Execute Findbugs 1.3.9 done: 3403 ms [INFO] Sensor FindbugsSensor done: 3520 ms [INFO] Execute maven plugin cobertura-maven-plugin... [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.sbml-impl [org.cytoscape.sbml] [INFO] task-segment: [org.codehaus.mojo:cobertura-maven-plugin::cobertura] [INFO] ------------------------------------------------------------------------ [INFO] Preparing cobertura:cobertura [INFO] [resources:resources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] [pax:compile] [INFO] Compiling 1 source file to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/ws/trunk/target/classes> [INFO] [recovering meta-data] [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Can not execute Sonar Embedded error: Unable to execute maven plugin Compilation failure [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 14 seconds [INFO] Finished at: Mon Jan 31 19:24:46 EST 2011 [INFO] Final Memory: 71M/720M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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