See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/1388/changes>
Changes: [ruschein] Renamed getDataTable() in CyRow to getTable(). ------------------------------------------ Started by an SCM change Checking out http://chianti.ucsd.edu/svn/core3/layout-cytoscape-impl/trunk A osgi.bnd A src A src/main A src/main/java A src/main/java/csplugins A src/main/java/csplugins/layout A src/main/java/csplugins/layout/Profile.java A src/main/java/csplugins/layout/algorithms A src/main/java/csplugins/layout/algorithms/GroupAttributesLayout.java.broken A src/main/java/csplugins/layout/algorithms/GroupAttributesLayout.java A src/main/java/csplugins/layout/algorithms/StackedNodeLayout.java A src/main/java/csplugins/layout/algorithms/circularLayout A src/main/java/csplugins/layout/algorithms/circularLayout/CircularLayoutAlgorithm.java A src/main/java/csplugins/layout/algorithms/circularLayout/CircularLayoutAlgorithmTask.java A src/main/java/csplugins/layout/algorithms/GroupAttributesLayoutTask.java A src/main/java/csplugins/layout/algorithms/StackedNodeLayoutTask.java A src/main/java/csplugins/layout/algorithms/bioLayout A src/main/java/csplugins/layout/algorithms/bioLayout/BioLayoutKKAlgorithm.java A src/main/java/csplugins/layout/algorithms/bioLayout/BioLayoutFRAlgorithm.java A src/main/java/csplugins/layout/algorithms/bioLayout/BioLayoutKKAlgorithmTask.java A src/main/java/csplugins/layout/algorithms/bioLayout/BioLayoutFRAlgorithmTask.java A src/main/java/csplugins/layout/algorithms/bioLayout/BioLayoutAlgorithm.java A src/main/java/csplugins/layout/algorithms/graphPartition A src/main/java/csplugins/layout/algorithms/graphPartition/DegreeSortedCircleLayoutTask.java A src/main/java/csplugins/layout/algorithms/graphPartition/AttributeCircleLayout.java A src/main/java/csplugins/layout/algorithms/graphPartition/ISOMLayout.java A src/main/java/csplugins/layout/algorithms/graphPartition/AttributeCircleLayoutTask.java A src/main/java/csplugins/layout/algorithms/graphPartition/ISOMLayoutTask.java A src/main/java/csplugins/layout/algorithms/graphPartition/DegreeSortedCircleLayout.java A src/main/java/csplugins/layout/algorithms/graphPartition/Layout.java A src/main/java/csplugins/layout/algorithms/hierarchicalLayout A src/main/java/csplugins/layout/algorithms/hierarchicalLayout/Graph.java A src/main/java/csplugins/layout/algorithms/hierarchicalLayout/HierarchicalLayoutAlgorithm.java A src/main/java/csplugins/layout/algorithms/hierarchicalLayout/Edge.java A src/main/java/csplugins/layout/algorithms/hierarchicalLayout/HierarchicalLayoutAlgorithmTask.java A src/main/resources A src/main/resources/META-INF A src/main/resources/META-INF/spring A src/main/resources/META-INF/spring/bundle-context-osgi.xml A src/main/resources/META-INF/spring/bundle-context.xml A pom.xml U . At revision 23988 WARNING: clock of the subversion server appears to be out of sync. This can result in inconsistent check out behavior. Parsing POMs [trunk] $ java -cp /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-agent-1.385.jar:/R1/tools/maven/apache-maven-2.1.0/boot/classworlds-1.1.jar hudson.maven.agent.Main /R1/tools/maven/apache-maven-2.1.0 /R1/resources/webservers/tomcat_2/webapps/hudson/WEB-INF/lib/remoting-1.385.jar /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-interceptor-1.385.jar 40098 /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven2.1-interceptor-1.2.jar <===[HUDSON REMOTING CAPACITY]===> channel started Executing Maven: -B -f <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/pom.xml> deploy [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.layout-cytoscape-impl [csplugins.layout] [INFO] task-segment: [deploy] [INFO] ------------------------------------------------------------------------ [INFO] [resources:resources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] snapshot org.cytoscape:model-api:3.0.0-alpha3-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.cytoscape:model-api:3.0.0-alpha3-SNAPSHOT: checking for updates from cytoscape_biopax_snapshot [INFO] snapshot org.cytoscape:model-api:3.0.0-alpha3-SNAPSHOT: checking for updates from spring-osgi [INFO] snapshot org.cytoscape:model-api:3.0.0-alpha3-SNAPSHOT: checking for updates from spring-osgi-snapshots [INFO] [pax:compile] [INFO] Compiling 23 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/classes> [INFO] [recovering meta-data] [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Layout impl/modules/org.cytoscape$layout-cytoscape-impl/builds/2011-02-01_12-01-34/archive/org.cytoscape/layout-cytoscape-impl/3.0.0-alpha2-SNAPSHOT/pom.xml [INFO] ------------------------------------------------------------------------ [ERROR] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Compilation failure <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/graphPartition/AttributeCircleLayoutTask.java>:[60,37] cannot find symbol symbol : method getTable() location: interface org.cytoscape.model.CyRow [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 7 seconds [INFO] Finished at: Tue Feb 01 12:01:45 EST 2011 [INFO] Final Memory: 55M/493M [INFO] ------------------------------------------------------------------------ Waiting for Hudson to finish collecting data Sending e-mails to: [email protected] channel stopped [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.layout-cytoscape-impl [csplugins.layout] [INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar] [INFO] Sonar host: http://localhost:8021/sonar [INFO] Sonar version: 2.4 Downloading: http://localhost:8021/sonar/deploy/maven/org/codehaus/sonar/runtime/sonar-core-maven-plugin/20110201010112/sonar-core-maven-plugin-20110201010112.pom 1863/510b 510b downloaded (sonar-core-maven-plugin-20110201010112.pom) Downloading: http://localhost:8021/sonar/deploy/maven/org/codehaus/sonar/runtime/sonar-core-maven-plugin/20110201010112/sonar-core-maven-plugin-20110201010112.jar 0/6K 1/6K 1/6K 2/6K 2/6K 3/6K 4/6K 4/6K 5/6K 5/6K 6/6K 6/6K 7/6K 8/6K 6K downloaded (sonar-core-maven-plugin-20110201010112.jar) [INFO] [sonar-core:internal] [INFO] Database dialect class org.sonar.jpa.dialect.MySql [INFO] ------------- Analyzing org.cytoscape.layout-cytoscape-impl [csplugins.layout] [INFO] Selected quality profile : [name=Cytoscape,language=java] [INFO] Configure maven plugins... [INFO] Sensor JavaSourceImporter... [INFO] Sensor JavaSourceImporter done: 484 ms [INFO] Sensor AsynchronousMeasuresSensor... [INFO] Sensor AsynchronousMeasuresSensor done: 23 ms [INFO] Sensor SquidSensor... [INFO] Java AST scan... [INFO] Java AST scan done: 1060 ms [INFO] Java bytecode scan... [WARN] Class 'csplugins/layout/algorithms/bioLayout/BioLayoutKKAlgorithmTask' is not accessible through the ClassLoader. [WARN] Class 'csplugins/layout/algorithms/graphPartition/AttributeCircleLayoutTask$AttributeComparator' is not accessible through the ClassLoader. [WARN] Class 'csplugins/layout/algorithms/bioLayout/BioLayoutKKAlgorithmTask' is not accessible through the ClassLoader. [WARN] Class 'csplugins/layout/algorithms/bioLayout/BioLayoutKKAlgorithmTask$PartialDerivatives' is not accessible through the ClassLoader. [WARN] Class 'csplugins/layout/algorithms/graphPartition/AttributeCircleLayoutTask' is not accessible through the ClassLoader. [WARN] Class 'csplugins/layout/algorithms/graphPartition/AttributeCircleLayoutTask' is not accessible through the ClassLoader. [WARN] Class 'csplugins/layout/algorithms/graphPartition/AttributeCircleLayoutTask$AttributeComparator' is not accessible through the ClassLoader. [WARN] Class 'csplugins/layout/algorithms/bioLayout/BioLayoutKKAlgorithmTask' is not accessible through the ClassLoader. [WARN] Class 'csplugins/layout/algorithms/bioLayout/BioLayoutKKAlgorithmTask$PartialDerivatives' is not accessible through the ClassLoader. [WARN] Class 'csplugins/layout/algorithms/graphPartition/AttributeCircleLayoutTask' is not accessible through the ClassLoader. [WARN] Class 'csplugins/layout/algorithms/graphPartition/AttributeCircleLayoutTask$AttributeComparator' is not accessible through the ClassLoader. [WARN] Class 'csplugins/layout/algorithms/bioLayout/BioLayoutKKAlgorithmTask' is not accessible through the ClassLoader. [WARN] Class 'csplugins/layout/algorithms/bioLayout/BioLayoutKKAlgorithmTask$PartialDerivatives' is not accessible through the ClassLoader. [WARN] Class 'csplugins/layout/algorithms/graphPartition/AttributeCircleLayoutTask' is not accessible through the ClassLoader. [INFO] Java bytecode scan done: 2106 ms [INFO] Squid extraction... [INFO] Package design analysis... [INFO] Package design analysis done: 13 ms [INFO] Squid extraction done: 545 ms [INFO] Sensor SquidSensor done: 3778 ms [INFO] Sensor FindbugsSensor... [INFO] Execute Findbugs 1.3.9... [INFO] Findbugs output report: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/sonar/findbugs-result.xml> The following classes needed for analysis were missing: csplugins.layout.algorithms.graphPartition.AttributeCircleLayoutTask csplugins.layout.algorithms.bioLayout.BioLayoutKKAlgorithmTask [INFO] Execute Findbugs 1.3.9 done: 11975 ms [INFO] Sensor FindbugsSensor done: 12569 ms [INFO] Execute maven plugin cobertura-maven-plugin... [INFO] artifact org.codehaus.mojo:cobertura-maven-plugin: checking for updates from maven2-repository.dev.java.net [INFO] artifact org.codehaus.mojo:cobertura-maven-plugin: checking for updates from maven-repository.dev.java.net [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.layout-cytoscape-impl [csplugins.layout] [INFO] task-segment: [org.codehaus.mojo:cobertura-maven-plugin::cobertura] [INFO] ------------------------------------------------------------------------ [INFO] Preparing cobertura:cobertura [INFO] [resources:resources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] [pax:compile] [INFO] Compiling 2 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/target/classes> [INFO] [recovering meta-data] [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Can not execute Sonar Embedded error: Unable to execute maven plugin Compilation failure <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20impl/ws/trunk/src/main/java/csplugins/layout/algorithms/graphPartition/AttributeCircleLayoutTask.java>:[60,37] cannot find symbol symbol : method getTable() location: interface org.cytoscape.model.CyRow [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 37 seconds [INFO] Finished at: Tue Feb 01 12:02:34 EST 2011 [INFO] Final Memory: 72M/781M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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