See <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/321/>
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[WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/data/CyAttributesUtils.java>:403: warning - Tag @see: missing '#': "copyAttributes(String,String,CyAttributes,AttributeFilter,boolean)" [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/data/CyAttributesUtils.java>:679: warning - @param argument "attr" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/data/ImportHandler.java>:456: warning - @param argument "u" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/data/SelectFilter.java>:470: warning - @return tag has no arguments. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/data/Semantics.java>:487: warning - @deprecated: is an unknown tag. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/view/CyNetworkView.java>:159: warning - Tag @link: reference not found: Cytoscape.CyNetwork#setSelectedNodeState(Collection, boolean) [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/view/CyNetworkView.java>:166: warning - Tag @link: reference not found: Cytoscape.CyNetwork#setSelectedNodeState(Collection, boolean) [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/view/CyNetworkView.java>:159: warning - Tag @link: reference not found: Cytoscape.CyNetwork#setSelectedNodeState(Collection, boolean) [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/view/CyNetworkView.java>:166: warning - Tag @link: reference not found: Cytoscape.CyNetwork#setSelectedNodeState(Collection, boolean) [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/view/CyNetworkView.java>:234: warning - @param argument "applyAppearances" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/view/GraphViewController.java>:240: warning - Tag @see: reference not found: GraphViewController.setGraphViewHandler [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/view/GraphViewController.java>:267: warning - @param argument "gv_to_handler" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/view/NetworkPanel.java>:248: warning - @return tag has no arguments. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/layout/Tunable.java>:190: warning - Tag @link: reference not found: csplugins.layout.algorithms.force#ForceDirectedLayout [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/swing/NetworkSelectorPanel.java>:47: warning - @return tag has no arguments. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/swing/WidestStringProvider.java>:50: warning - @return tag has no arguments. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/shadegrown/WindowUtilities.java>:62: warning - Tag @link: can't find setExitJVMWhenAllWindowsClose in cytoscape.util.shadegrown.WindowUtilities [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/shadegrown/WindowUtilities.java>:62: warning - Tag @link: can't find addPrimaryWindow( Window ) in cytoscape.util.shadegrown.WindowUtilities [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/BookmarksUtil.java>:92: warning - @return tag has no arguments. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/BookmarksUtil.java>:74: warning - @return tag has no arguments. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/ColorUtil.java>:126: warning - @return tag has no arguments. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/CyFileFilter.java>:341: warning - Tag @see: reference not found: setDescription [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/CyFileFilter.java>:341: warning - Tag @see: reference not found: setExtensionListInDescription [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/CyFileFilter.java>:341: warning - Tag @see: reference not found: isExtensionListInDescription [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/CyFileFilter.java>:376: warning - Tag @see: reference not found: setDescription [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/CyFileFilter.java>:376: warning - Tag @see: reference not found: setExtensionListInDescription [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/CyFileFilter.java>:376: warning - Tag @see: reference not found: isExtensionListInDescription [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/CyFileFilter.java>:392: warning - Tag @see: reference not found: getDescription [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/CyFileFilter.java>:392: warning - Tag @see: reference not found: setDescription [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/CyFileFilter.java>:392: warning - Tag @see: reference not found: isExtensionListInDescription [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/CyFileFilter.java>:408: warning - Tag @see: reference not found: getDescription [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/CyFileFilter.java>:408: warning - Tag @see: reference not found: setDescription [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/CyFileFilter.java>:408: warning - Tag @see: reference not found: setExtensionListInDescription [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/CyFileFilter.java>:464: warning - Tag @see: reference not found: setDescription [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/CyFileFilter.java>:464: warning - Tag @see: reference not found: setExtensionListInDescription [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/CyFileFilter.java>:464: warning - Tag @see: reference not found: isExtensionListInDescription [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/CyNetworkNaming.java>:103: warning - @para is an unknown tag. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/CytoscapeAction.java>:299: warning - Tag @see: can't find inToolBar() in cytoscape.util.CytoscapeAction [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/CytoscapeAction.java>:271: warning - Tag @see: can't find inMenuBar() in cytoscape.util.CytoscapeAction [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/CytoscapeAction.java>:200: warning - Tag @see:illegal character: "59" in "#getPrefferedButtonGroup();" [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/CytoscapeAction.java>:200: warning - Tag @see: can't find getPrefferedButtonGroup(); in cytoscape.util.CytoscapeAction [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/CytoscapeAction.java>:69: warning - @beaninfo is an unknown tag. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/CytoscapeAction.java>:188: warning - @beaninfo is an unknown tag. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/CytoscapeAction.java>:200: warning - @beaninfo is an unknown tag. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/CytoscapeAction.java>:278: warning - @beaninfo is an unknown tag. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/CytoscapeAction.java>:306: warning - @beaninfo is an unknown tag. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/CytoscapeMenuBar.java>:378: warning - @beaninfo is an unknown tag. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/FileUtil.java>:177: warning - @param argument "filters" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/GMLFileFilter.java>:96: warning - @param argument "fileName" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/JnlpWriterUtil.java>:184: warning - @param argument "Loc" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/MathUtil.java>:8: warning - @returns is an unknown tag. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/MathUtil.java>:18: warning - @returns is an unknown tag. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/Misc.java>:62: warning - @param argument "text" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/NNFFileFilter.java>:70: warning - @param argument "fileName" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/RecentlyOpenedTracker.java>:78: warning - @returns is an unknown tag. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/SIFFileFilter.java>:96: warning - @param argument "fileName" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/TopologicalSort.java>:55: warning - @param argument "edges" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/URLUtil.java>:161: warning - @return tag has no arguments. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/URLUtil.java>:161: warning - @return tag cannot be used in method with void return type. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/XGMMLFileFilter.java>:100: warning - @param argument "fileName" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/ZipUtil.java>:394: warning - @return tag has no arguments. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/ZipUtil.java>:431: warning - @param argument "is" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/command/CyCommandManager.java>:57: warning - Tag @link: reference not found: CyCommand [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/command/CyCommandNamespace.java>:45: warning - Tag @link: reference not found: CyCommand [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/corelibs/giny/src/main/java/giny/view/ObjectPosition.java>:52: warning - @param argument "b" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/corelibs/giny/src/main/java/giny/view/ObjectPosition.java>:59: warning - @param argument "b" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/corelibs/giny/src/main/java/giny/view/ObjectPosition.java>:66: warning - @param argument "b" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/corelibs/giny/src/main/java/giny/view/ObjectPosition.java>:90: warning - @param argument "lp" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/corelibs/render.stateful/src/main/java/cytoscape/render/stateful/NodeDetails.java>:501: warning - @return tag has no arguments. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/corelibs/render.stateful/src/main/java/cytoscape/render/stateful/NodeDetails.java>:377: warning - Tag @see: can't find graphicNodeAnchor(int, int) in cytoscape.render.stateful.NodeDetails [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/corelibs/render.stateful/src/main/java/cytoscape/render/stateful/NodeDetails.java>:392: warning - Tag @see: can't find graphicNodeAnchor(int, int) in cytoscape.render.stateful.NodeDetails [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/corelibs/ding/src/main/java/ding/view/ObjectPositionImpl.java>:41: warning - @param argument "lp" is not a parameter name. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/command/CyCommandNamespace.java>:45: warning - Tag @link: reference not found: CyCommand [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/command/CyCommandManager.java>:57: warning - Tag @link: reference not found: CyCommand [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/visual/package.html>: warning - Tag @link: reference not found: cytoscape.CytoscapeWindow CytoscapeWindow [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/visual/package.html>: warning - Tag @link: reference not found: cytoscape.CyAttributes CyAttributes [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/visual/package.html>: warning - Tag @link: reference not found: cytoscape.CytoscapeWindow#edgeAttributes edgeAttributes [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/visual/package.html>: warning - Tag @link: reference not found: cytoscape.CytoscapeWindow#nodeAttributes nodeAttributes [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/dialogs/SetNestedNetworkDialog.java>:59: warning - Tag @param cannot be used in field documentation. It can only be used in the following types of documentation: class/interface, constructor, method. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/dialogs/SetNestedNetworkDialog.java>:59: warning - Tag @param cannot be used in field documentation. It can only be used in the following types of documentation: class/interface, constructor, method. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/dialogs/SetNestedNetworkDialog.java>:59: warning - Tag @param cannot be used in field documentation. It can only be used in the following types of documentation: class/interface, constructor, method. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/util/CytoscapeMenuBar.java>:78: warning - @beaninfo is an unknown tag. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/view/CyNetworkView.java>:159: warning - Tag @link: reference not found: Cytoscape.CyNetwork#setSelectedNodeState(Collection, boolean) [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/view/CyNetworkView.java>:166: warning - Tag @link: reference not found: Cytoscape.CyNetwork#setSelectedNodeState(Collection, boolean) [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/command/CyCommandNamespace.java>:45: warning - Tag @link: reference not found: CyCommand [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/command/CyCommandManager.java>:57: warning - Tag @link: reference not found: CyCommand [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/command/CyCommandNamespace.java>:45: warning - Tag @link: reference not found: CyCommand [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/view/CyNetworkView.java>:159: warning - Tag @link: reference not found: Cytoscape.CyNetwork#setSelectedNodeState(Collection, boolean) [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/view/CyNetworkView.java>:166: warning - Tag @link: reference not found: Cytoscape.CyNetwork#setSelectedNodeState(Collection, boolean) [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/view/CyNetworkView.java>:159: warning - Tag @link: reference not found: Cytoscape.CyNetwork#setSelectedNodeState(Collection, boolean) [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/application/src/main/java/cytoscape/view/CyNetworkView.java>:166: warning - Tag @link: reference not found: Cytoscape.CyNetwork#setSelectedNodeState(Collection, boolean) [INFO] Building jar: <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/javadoc/target/javadoc-2.8.1-beta3-SNAPSHOT-javadoc.jar> [INFO] [javadoc:aggregate-jar {execution: javadoc-jar}] [INFO] Building jar: <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/javadoc/target/javadoc-2.8.1-beta3-SNAPSHOT-javadoc.jar> [INFO] Preparing source:jar [WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation. [INFO] No goals needed for project - skipping [INFO] [source:jar {execution: attach-sources}] [INFO] Building jar: <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/javadoc/target/javadoc-2.8.1-beta3-SNAPSHOT-sources.jar> [INFO] [install:install] [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/javadoc/target/javadoc-2.8.1-beta3-SNAPSHOT.jar> to /home/bturner/.m2/repository/cytoscape/javadoc/2.8.1-beta3-SNAPSHOT/javadoc-2.8.1-beta3-SNAPSHOT.jar [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/javadoc/target/javadoc-2.8.1-beta3-SNAPSHOT-javadoc.jar> to /home/bturner/.m2/repository/cytoscape/javadoc/2.8.1-beta3-SNAPSHOT/javadoc-2.8.1-beta3-SNAPSHOT-javadoc.jar [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/javadoc/target/javadoc-2.8.1-beta3-SNAPSHOT-javadoc.jar> to /home/bturner/.m2/repository/cytoscape/javadoc/2.8.1-beta3-SNAPSHOT/javadoc-2.8.1-beta3-SNAPSHOT-javadoc.jar [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/javadoc/target/javadoc-2.8.1-beta3-SNAPSHOT-sources.jar> to /home/bturner/.m2/repository/cytoscape/javadoc/2.8.1-beta3-SNAPSHOT/javadoc-2.8.1-beta3-SNAPSHOT-sources.jar [INFO] [deploy:deploy] [INFO] Retrieving previous build number from snapshots Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/cytoscape/javadoc/2.8.1-beta3-SNAPSHOT/javadoc-2.8.1-beta3-20110209.015437-3.jar 2K uploaded (javadoc-2.8.1-beta3-20110209.015437-3.jar) [INFO] Retrieving previous metadata from snapshots [INFO] Uploading repository metadata for: 'snapshot cytoscape:javadoc:2.8.1-beta3-SNAPSHOT' [INFO] Retrieving previous metadata from snapshots [INFO] Uploading repository metadata for: 'artifact cytoscape:javadoc' [INFO] Uploading project information for javadoc 2.8.1-beta3-20110209.015437-3 [INFO] Retrieving previous build number from snapshots Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/cytoscape/javadoc/2.8.1-beta3-SNAPSHOT/javadoc-2.8.1-beta3-20110209.015437-3-javadoc.jar 6798K uploaded (javadoc-2.8.1-beta3-20110209.015437-3-javadoc.jar) [INFO] Retrieving previous build number from snapshots Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/cytoscape/javadoc/2.8.1-beta3-SNAPSHOT/javadoc-2.8.1-beta3-20110209.015437-3-javadoc.jar 6798K uploaded (javadoc-2.8.1-beta3-20110209.015437-3-javadoc.jar) [INFO] Retrieving previous build number from snapshots Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/cytoscape/javadoc/2.8.1-beta3-SNAPSHOT/javadoc-2.8.1-beta3-20110209.015437-3-sources.jar 324b uploaded (javadoc-2.8.1-beta3-20110209.015437-3-sources.jar) [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/javadoc/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cytoscape_2.X_application/modules/cytoscape$javadoc/builds/2011-02-08_20-54-24/archive/cytoscape/javadoc/2.8.1-beta3-SNAPSHOT/pom.xml [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/javadoc/target/javadoc-2.8.1-beta3-SNAPSHOT.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cytoscape_2.X_application/modules/cytoscape$javadoc/builds/2011-02-08_20-54-24/archive/cytoscape/javadoc/2.8.1-beta3-20110209.015437-3/javadoc-2.8.1-beta3-SNAPSHOT.jar [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/javadoc/target/javadoc-2.8.1-beta3-SNAPSHOT-javadoc.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cytoscape_2.X_application/modules/cytoscape$javadoc/builds/2011-02-08_20-54-24/archive/cytoscape/javadoc/2.8.1-beta3-20110209.015437-3/javadoc-2.8.1-beta3-SNAPSHOT-javadoc.jar [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/javadoc/target/javadoc-2.8.1-beta3-SNAPSHOT-sources.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cytoscape_2.X_application/modules/cytoscape$javadoc/builds/2011-02-08_20-54-24/archive/cytoscape/javadoc/2.8.1-beta3-20110209.015437-3/javadoc-2.8.1-beta3-SNAPSHOT-sources.jar [INFO] ------------------------------------------------------------------------ [INFO] Building Cytoscape Release Bundle Packaging [INFO] task-segment: [deploy] [INFO] ------------------------------------------------------------------------ [INFO] [dependency:unpack-dependencies {execution: unpack-distribution}] [INFO] Unpacking <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/distribution/target/cytoscape-2.8.1-beta3-SNAPSHOT.zipto> <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/packaging/target> with Includes null and excludes:null [INFO] [dependency:unpack-dependencies {execution: unpack-javadoc}] [INFO] Unpacking <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/javadoc/target/javadoc-2.8.1-beta3-SNAPSHOT-javadoc.jarto> <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/packaging/target/install4j/javadoc> with Includes null and excludes:null [INFO] cytoscape-2.8.1-beta3-SNAPSHOT.zip already exists in destination. [INFO] [dependency:copy-dependencies {execution: copy-distribution}] [INFO] Copying cytoscape-2.8.1-beta3-SNAPSHOT.tar.gz to <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/packaging/target/install4j/cytoscape-2.8.1-beta3-SNAPSHOT.tar.gz> [INFO] Copying cytoscape-2.8.1-beta3-SNAPSHOT.zip to <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/packaging/target/install4j/cytoscape-2.8.1-beta3-SNAPSHOT.zip> [INFO] Copying javadoc-2.8.1-beta3-SNAPSHOT-javadoc.jar to <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/packaging/target/install4j/javadoc-2.8.1-beta3-SNAPSHOT-javadoc.jar> [INFO] [resources:resources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [compiler:compile] [INFO] No sources to compile [INFO] [resources:testResources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/packaging/src/test/resources> [INFO] [compiler:testCompile] [INFO] No sources to compile [INFO] [surefire:test] [INFO] No tests to run. [HUDSON] Recording test results [INFO] [jar:jar] [INFO] Building jar: <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/packaging/target/packaging-2.8.1-beta3-SNAPSHOT.jar> [INFO] [javadoc:jar {execution: attach-javadocs}] [INFO] Preparing source:jar [WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation. [INFO] No goals needed for project - skipping [INFO] [source:jar {execution: attach-sources}] [INFO] Building jar: <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/packaging/target/packaging-2.8.1-beta3-SNAPSHOT-sources.jar> [INFO] [install:install] [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/packaging/target/packaging-2.8.1-beta3-SNAPSHOT.jar> to /home/bturner/.m2/repository/cytoscape/packaging/2.8.1-beta3-SNAPSHOT/packaging-2.8.1-beta3-SNAPSHOT.jar [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/packaging/target/packaging-2.8.1-beta3-SNAPSHOT-sources.jar> to /home/bturner/.m2/repository/cytoscape/packaging/2.8.1-beta3-SNAPSHOT/packaging-2.8.1-beta3-SNAPSHOT-sources.jar [INFO] [deploy:deploy] [INFO] Retrieving previous build number from snapshots Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/cytoscape/packaging/2.8.1-beta3-SNAPSHOT/packaging-2.8.1-beta3-20110209.015437-3.jar 15K uploaded (packaging-2.8.1-beta3-20110209.015437-3.jar) [INFO] Retrieving previous metadata from snapshots [INFO] Uploading repository metadata for: 'snapshot cytoscape:packaging:2.8.1-beta3-SNAPSHOT' [INFO] Uploading project information for packaging 2.8.1-beta3-20110209.015437-3 [INFO] Retrieving previous metadata from snapshots [INFO] Uploading repository metadata for: 'artifact cytoscape:packaging' [INFO] Retrieving previous build number from snapshots Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/cytoscape/packaging/2.8.1-beta3-SNAPSHOT/packaging-2.8.1-beta3-20110209.015437-3-sources.jar 13K uploaded (packaging-2.8.1-beta3-20110209.015437-3-sources.jar) [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/packaging/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cytoscape_2.X_application/modules/cytoscape$packaging/builds/2011-02-08_20-54-24/archive/cytoscape/packaging/2.8.1-beta3-SNAPSHOT/pom.xml [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/packaging/target/packaging-2.8.1-beta3-SNAPSHOT.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cytoscape_2.X_application/modules/cytoscape$packaging/builds/2011-02-08_20-54-24/archive/cytoscape/packaging/2.8.1-beta3-20110209.015437-3/packaging-2.8.1-beta3-SNAPSHOT.jar [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/packaging/target/packaging-2.8.1-beta3-SNAPSHOT-sources.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cytoscape_2.X_application/modules/cytoscape$packaging/builds/2011-02-08_20-54-24/archive/cytoscape/packaging/2.8.1-beta3-20110209.015437-3/packaging-2.8.1-beta3-SNAPSHOT-sources.jar [INFO] ------------------------------------------------------------------------ [INFO] Building Cytoscape Webstart [INFO] task-segment: [deploy] [INFO] ------------------------------------------------------------------------ [INFO] [site:attach-descriptor] [INFO] [javadoc:jar {execution: attach-javadocs}] [INFO] Not executing Javadoc as the project is not a Java classpath-capable package [INFO] Preparing source:jar [WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation. [INFO] No goals needed for project - skipping [INFO] [source:jar {execution: attach-sources}] [INFO] [install:install] [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/webstart/target/pom-transformed.xml> to /home/bturner/.m2/repository/cytoscape/webstart/2.8.1-beta3-SNAPSHOT/webstart-2.8.1-beta3-SNAPSHOT.pom [INFO] [deploy:deploy] [INFO] Retrieving previous build number from snapshots Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/cytoscape/webstart/2.8.1-beta3-SNAPSHOT/webstart-2.8.1-beta3-20110209.015437-3.pom 7K uploaded (webstart-2.8.1-beta3-20110209.015437-3.pom) [INFO] Retrieving previous metadata from snapshots [INFO] Uploading repository metadata for: 'snapshot cytoscape:webstart:2.8.1-beta3-SNAPSHOT' [INFO] Retrieving previous metadata from snapshots [INFO] Uploading repository metadata for: 'artifact cytoscape:webstart' [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/webstart/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cytoscape_2.X_application/modules/cytoscape$webstart/builds/2011-02-08_20-54-24/archive/cytoscape/webstart/2.8.1-beta3-SNAPSHOT/pom.xml [HUDSON] Archiving /home/bturner/.m2/repository/cytoscape/webstart/2.8.1-beta3-SNAPSHOT/webstart-2.8.1-beta3-SNAPSHOT.pom to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cytoscape_2.X_application/modules/cytoscape$webstart/builds/2011-02-08_20-54-24/archive/cytoscape/webstart/2.8.1-beta3-20110209.015437-3/webstart-2.8.1-beta3-SNAPSHOT.pom [INFO] ------------------------------------------------------------------------ [INFO] Building Cytoscape Archetypes Parent POM [INFO] task-segment: [deploy] [INFO] ------------------------------------------------------------------------ [INFO] [site:attach-descriptor] [INFO] [install:install] [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/archetypes/target/pom-transformed.xml> to /home/bturner/.m2/repository/cytoscape/archetypes/parent/2.8.1-beta3-SNAPSHOT/parent-2.8.1-beta3-SNAPSHOT.pom [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cytoscape_2.X_application/ws/trunk/archetypes/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cytoscape_2.X_application/modules/cytoscape.archetypes$parent/builds/2011-02-08_20-54-24/archive/cytoscape.archetypes/parent/2.8.1-beta3-SNAPSHOT/pom.xml [HUDSON] Archiving /home/bturner/.m2/repository/cytoscape/archetypes/parent/2.8.1-beta3-SNAPSHOT/parent-2.8.1-beta3-SNAPSHOT.pom to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cytoscape_2.X_application/modules/cytoscape.archetypes$parent/builds/2011-02-08_20-54-24/archive/cytoscape.archetypes/parent/2.8.1-beta3-SNAPSHOT/parent-2.8.1-beta3-SNAPSHOT.pom [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Failed to configure plugin parameters for: org.apache.maven.plugins:maven-deploy-plugin:2.4 check that the following section of the pom.xml is present and correct: <distributionManagement> <!-- use the following if you're not using a snapshot version. --> <repository> <id>repo</id> <name>Repository Name</name> <url>scp://host/path/to/repo</url> </repository> <!-- use the following if you ARE using a snapshot version. --> <snapshotRepository> <id>repo</id> <name>Repository Name</name> <url>scp://host/path/to/repo</url> </snapshotRepository> </distributionManagement> Cause: Class 'org.apache.maven.artifact.repository.ArtifactRepository' cannot be instantiated [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 26 minutes 51 seconds [INFO] Finished at: Tue Feb 08 21:21:18 EST 2011 [INFO] Final Memory: 158M/1830M [INFO] ------------------------------------------------------------------------ channel stopped -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/cytoscape-cvs?hl=en.
