See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/178/changes>
Changes: [jm] Added OSGi bits for SBML [jm] Cleaned up SBML bundle; added OSGi bits ------------------------------------------ Started by an SCM change Checking out http://chianti.ucsd.edu/svn/core3/sbml-impl/trunk A osgi.bnd A src A src/test A src/test/java A src/test/java/org A src/test/java/org/cytoscape A src/test/java/org/cytoscape/sbml A src/test/java/org/cytoscape/sbml/internal AU src/test/java/org/cytoscape/sbml/internal/SBMLFileFilterTest.java AU src/test/java/org/cytoscape/sbml/internal/SBMLNetworkViewReaderTest.java A src/test/resources AU src/test/resources/BIOMD0000000003.xml A src/main A src/main/java A src/main/java/org A src/main/java/org/cytoscape A src/main/java/org/cytoscape/sbml A src/main/java/org/cytoscape/sbml/internal AU src/main/java/org/cytoscape/sbml/internal/SBMLFileFilter.java AU src/main/java/org/cytoscape/sbml/internal/SBMLNetworkViewReader.java AU src/main/java/org/cytoscape/sbml/internal/SBMLNetworkViewTaskFactory.java A src/main/resources A src/main/resources/META-INF A src/main/resources/META-INF/spring AU src/main/resources/META-INF/spring/bundle-context-osgi.xml AU src/main/resources/META-INF/spring/bundle-context.xml AU pom.xml U . At revision 24090 No emails were triggered. Parsing POMs [trunk] $ java -cp /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-agent-1.385.jar:/R1/tools/maven/apache-maven-2.1.0/boot/classworlds-1.1.jar hudson.maven.agent.Main /R1/tools/maven/apache-maven-2.1.0 /R1/resources/webservers/tomcat_2/webapps/hudson/WEB-INF/lib/remoting-1.385.jar /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-interceptor-1.385.jar 38031 /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven2.1-interceptor-1.2.jar <===[HUDSON REMOTING CAPACITY]===> channel started Executing Maven: -B -f <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/ws/trunk/pom.xml> deploy [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.sbml-impl [org.cytoscape.sbml] [INFO] task-segment: [deploy] [INFO] ------------------------------------------------------------------------ [INFO] [resources:resources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty//cytoscape-temp/jsbml/0.8-b1/jsbml-0.8-b1.pom [INFO] Unable to find resource 'cytoscape-temp:jsbml:pom:0.8-b1' in repository cytoscape_thirdparty (http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/releases//cytoscape-temp/jsbml/0.8-b1/jsbml-0.8-b1.pom [INFO] Unable to find resource 'cytoscape-temp:jsbml:pom:0.8-b1' in repository cytoscape_releases (http://cytoscape.wodaklab.org/nexus/content/repositories/releases/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-release//cytoscape-temp/jsbml/0.8-b1/jsbml-0.8-b1.pom [INFO] Unable to find resource 'cytoscape-temp:jsbml:pom:0.8-b1' in repository cytoscape_biopax_release (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-release/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/ops4j-release//cytoscape-temp/jsbml/0.8-b1/jsbml-0.8-b1.pom [INFO] Unable to find resource 'cytoscape-temp:jsbml:pom:0.8-b1' in repository ops4j-release (http://cytoscape.wodaklab.org/nexus/content/repositories/ops4j-release/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi//cytoscape-temp/jsbml/0.8-b1/jsbml-0.8-b1.pom [INFO] Unable to find resource 'cytoscape-temp:jsbml:pom:0.8-b1' in repository spring-osgi (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external//cytoscape-temp/jsbml/0.8-b1/jsbml-0.8-b1.pom [INFO] Unable to find resource 'cytoscape-temp:jsbml:pom:0.8-b1' in repository spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external/) Downloading: http://cytoscape.wodaklab.org/nexus/content/groups/public/cytoscape-temp/jsbml/0.8-b1/jsbml-0.8-b1.pom [INFO] Unable to find resource 'cytoscape-temp:jsbml:pom:0.8-b1' in repository central (http://repo1.maven.org/maven2) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty//cytoscape-temp/jsbml/0.8-b1/jsbml-0.8-b1.jar [INFO] Unable to find resource 'cytoscape-temp:jsbml:jar:0.8-b1' in repository cytoscape_thirdparty (http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/releases//cytoscape-temp/jsbml/0.8-b1/jsbml-0.8-b1.jar [INFO] Unable to find resource 'cytoscape-temp:jsbml:jar:0.8-b1' in repository cytoscape_releases (http://cytoscape.wodaklab.org/nexus/content/repositories/releases/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-release//cytoscape-temp/jsbml/0.8-b1/jsbml-0.8-b1.jar [INFO] Unable to find resource 'cytoscape-temp:jsbml:jar:0.8-b1' in repository cytoscape_biopax_release (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-release/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/ops4j-release//cytoscape-temp/jsbml/0.8-b1/jsbml-0.8-b1.jar [INFO] Unable to find resource 'cytoscape-temp:jsbml:jar:0.8-b1' in repository ops4j-release (http://cytoscape.wodaklab.org/nexus/content/repositories/ops4j-release/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi//cytoscape-temp/jsbml/0.8-b1/jsbml-0.8-b1.jar [INFO] Unable to find resource 'cytoscape-temp:jsbml:jar:0.8-b1' in repository spring-osgi (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external//cytoscape-temp/jsbml/0.8-b1/jsbml-0.8-b1.jar [INFO] Unable to find resource 'cytoscape-temp:jsbml:jar:0.8-b1' in repository spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external/) Downloading: http://cytoscape.wodaklab.org/nexus/content/groups/public/cytoscape-temp/jsbml/0.8-b1/jsbml-0.8-b1.jar [INFO] Unable to find resource 'cytoscape-temp:jsbml:jar:0.8-b1' in repository central (http://repo1.maven.org/maven2) [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20SBML%20Impl/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 SBML Impl/modules/org.cytoscape$sbml-impl/builds/2011-02-10_16-05-00/archive/org.cytoscape/sbml-impl/1.0-SNAPSHOT/pom.xml [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Failed to resolve artifact. Missing: ---------- 1) cytoscape-temp:jsbml:jar:0.8-b1 Try downloading the file manually from the project website. Then, install it using the command: mvn install:install-file -DgroupId=cytoscape-temp -DartifactId=jsbml -Dversion=0.8-b1 -Dpackaging=jar -Dfile=/path/to/file Alternatively, if you host your own repository you can deploy the file there: mvn deploy:deploy-file -DgroupId=cytoscape-temp -DartifactId=jsbml -Dversion=0.8-b1 -Dpackaging=jar -Dfile=/path/to/file -Durl=[url] -DrepositoryId=[id] Path to dependency: 1) org.cytoscape:sbml-impl:bundle:1.0-SNAPSHOT 2) cytoscape-temp:jsbml:jar:0.8-b1 ---------- 1 required artifact is missing. for artifact: org.cytoscape:sbml-impl:bundle:1.0-SNAPSHOT from the specified remote repositories: cytoscape_releases (http://cytoscape.wodaklab.org/nexus/content/repositories/releases/), cytoscape_biopax_release (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-release/), cytoscape_biopax_snapshot (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/), cytoscape_thirdparty (http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty/), ops4j-release (http://cytoscape.wodaklab.org/nexus/content/repositories/ops4j-release/), cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/), spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external/), Nexus (http://cytoscape.wodaklab.org/nexus/content/groups/public), spring-osgi (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi/) [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 5 seconds [INFO] Finished at: Thu Feb 10 16:05:07 EST 2011 [INFO] Final Memory: 30M/220M [INFO] ------------------------------------------------------------------------ channel stopped [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.sbml-impl [org.cytoscape.sbml] [INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar] [INFO] Sonar host: http://localhost:8021/sonar [INFO] Sonar version: 2.4 Downloading: http://localhost:8021/sonar/deploy/maven/cytoscape-temp/jsbml/0.8-b1/jsbml-0.8-b1.pom [INFO] Unable to find resource 'cytoscape-temp:jsbml:pom:0.8-b1' in repository sonar (http://localhost:8021/sonar/deploy/maven) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty//cytoscape-temp/jsbml/0.8-b1/jsbml-0.8-b1.pom [INFO] Unable to find resource 'cytoscape-temp:jsbml:pom:0.8-b1' in repository cytoscape_thirdparty (http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/releases//cytoscape-temp/jsbml/0.8-b1/jsbml-0.8-b1.pom [INFO] Unable to find resource 'cytoscape-temp:jsbml:pom:0.8-b1' in repository cytoscape_releases (http://cytoscape.wodaklab.org/nexus/content/repositories/releases/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-release//cytoscape-temp/jsbml/0.8-b1/jsbml-0.8-b1.pom [INFO] Unable to find resource 'cytoscape-temp:jsbml:pom:0.8-b1' in repository cytoscape_biopax_release (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-release/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/ops4j-release//cytoscape-temp/jsbml/0.8-b1/jsbml-0.8-b1.pom [INFO] Unable to find resource 'cytoscape-temp:jsbml:pom:0.8-b1' in repository ops4j-release (http://cytoscape.wodaklab.org/nexus/content/repositories/ops4j-release/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi//cytoscape-temp/jsbml/0.8-b1/jsbml-0.8-b1.pom [INFO] Unable to find resource 'cytoscape-temp:jsbml:pom:0.8-b1' in repository spring-osgi (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external//cytoscape-temp/jsbml/0.8-b1/jsbml-0.8-b1.pom [INFO] Unable to find resource 'cytoscape-temp:jsbml:pom:0.8-b1' in repository spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external/) Downloading: http://cytoscape.wodaklab.org/nexus/content/groups/public/cytoscape-temp/jsbml/0.8-b1/jsbml-0.8-b1.pom [INFO] Unable to find resource 'cytoscape-temp:jsbml:pom:0.8-b1' in repository central (http://repo1.maven.org/maven2) Downloading: http://localhost:8021/sonar/deploy/maven/cytoscape-temp/jsbml/0.8-b1/jsbml-0.8-b1.jar [INFO] Unable to find resource 'cytoscape-temp:jsbml:jar:0.8-b1' in repository sonar (http://localhost:8021/sonar/deploy/maven) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty//cytoscape-temp/jsbml/0.8-b1/jsbml-0.8-b1.jar [INFO] Unable to find resource 'cytoscape-temp:jsbml:jar:0.8-b1' in repository cytoscape_thirdparty (http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/releases//cytoscape-temp/jsbml/0.8-b1/jsbml-0.8-b1.jar [INFO] Unable to find resource 'cytoscape-temp:jsbml:jar:0.8-b1' in repository cytoscape_releases (http://cytoscape.wodaklab.org/nexus/content/repositories/releases/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-release//cytoscape-temp/jsbml/0.8-b1/jsbml-0.8-b1.jar [INFO] Unable to find resource 'cytoscape-temp:jsbml:jar:0.8-b1' in repository cytoscape_biopax_release (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-release/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/ops4j-release//cytoscape-temp/jsbml/0.8-b1/jsbml-0.8-b1.jar [INFO] Unable to find resource 'cytoscape-temp:jsbml:jar:0.8-b1' in repository ops4j-release (http://cytoscape.wodaklab.org/nexus/content/repositories/ops4j-release/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi//cytoscape-temp/jsbml/0.8-b1/jsbml-0.8-b1.jar [INFO] Unable to find resource 'cytoscape-temp:jsbml:jar:0.8-b1' in repository spring-osgi (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external//cytoscape-temp/jsbml/0.8-b1/jsbml-0.8-b1.jar [INFO] Unable to find resource 'cytoscape-temp:jsbml:jar:0.8-b1' in repository spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external/) Downloading: http://cytoscape.wodaklab.org/nexus/content/groups/public/cytoscape-temp/jsbml/0.8-b1/jsbml-0.8-b1.jar [INFO] Unable to find resource 'cytoscape-temp:jsbml:jar:0.8-b1' in repository central (http://repo1.maven.org/maven2) [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Can not execute Sonar Embedded error: Missing: ---------- 1) cytoscape-temp:jsbml:jar:0.8-b1 Try downloading the file manually from the project website. Then, install it using the command: mvn install:install-file -DgroupId=cytoscape-temp -DartifactId=jsbml -Dversion=0.8-b1 -Dpackaging=jar -Dfile=/path/to/file Alternatively, if you host your own repository you can deploy the file there: mvn deploy:deploy-file -DgroupId=cytoscape-temp -DartifactId=jsbml -Dversion=0.8-b1 -Dpackaging=jar -Dfile=/path/to/file -Durl=[url] -DrepositoryId=[id] Path to dependency: 1) org.cytoscape:sbml-impl:bundle:1.0-SNAPSHOT 2) cytoscape-temp:jsbml:jar:0.8-b1 ---------- 1 required artifact is missing. for artifact: org.cytoscape:sbml-impl:bundle:1.0-SNAPSHOT from the specified remote repositories: cytoscape_releases (http://cytoscape.wodaklab.org/nexus/content/repositories/releases/), cytoscape_biopax_release (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-release/), sonar (http://localhost:8021/sonar/deploy/maven), cytoscape_biopax_snapshot (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/), cytoscape_thirdparty (http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty/), ops4j-release (http://cytoscape.wodaklab.org/nexus/content/repositories/ops4j-release/), cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/), spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external/), Nexus (http://cytoscape.wodaklab.org/nexus/content/groups/public), spring-osgi (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi/) [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 1 second [INFO] Finished at: Thu Feb 10 16:05:10 EST 2011 [INFO] Final Memory: 15M/213M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/cytoscape-cvs?hl=en.
