See
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/1939/>
------------------------------------------
[...truncated 328 lines...]
Tests run: 64, Failures: 0, Errors: 0, Skipped: 0
[HUDSON] Recording test results
[INFO] [bundle:bundle]
[INFO] [javadoc:jar {execution: attach-javadocs}]
[ERROR] Error fetching link:
http://cytoscape.wodaklab.org/javadoc/package-list. Ignored it.
Loading source files for package org.cytoscape.task.internal.select...
Loading source files for package org.cytoscape.task.internal.loaddatatable...
Loading source files for package org.cytoscape.task.internal.title...
Loading source files for package org.cytoscape.task.internal.session...
Loading source files for package org.cytoscape.task.internal.zoom...
Loading source files for package org.cytoscape.task.internal.table...
Loading source files for package org.cytoscape.task.internal.loadnetwork...
Loading source files for package org.cytoscape.task.internal.exportnetwork...
Loading source files for package org.cytoscape.task.internal.setcurrent...
Loading source files for package org.cytoscape.task.internal.proxysettings...
Loading source files for package org.cytoscape.task.internal.exportgraphics...
Loading source files for package org.cytoscape.task.internal.networkobjects...
Loading source files for package org.cytoscape.task.internal.destruction...
Loading source files for package org.cytoscape.task.internal.creation...
Loading source files for package org.cytoscape.task.internal.io...
Loading source files for package org.cytoscape.task.internal.hide...
Loading source files for package org.cytoscape.task.internal.layout...
Constructing Javadoc information...
1 error
[HUDSON] Archiving
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/pom.xml>
to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Core Task
Implementation/modules/org.cytoscape$core-task-impl/builds/2011-02-12_20-03-31/archive/org.cytoscape/core-task-impl/3.0.0-alpha2-SNAPSHOT/pom.xml
[HUDSON] Archiving
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/target/core-task-impl-3.0.0-alpha2-SNAPSHOT.jar>
to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Core Task
Implementation/modules/org.cytoscape$core-task-impl/builds/2011-02-12_20-03-31/archive/org.cytoscape/core-task-impl/3.0.0-alpha2-SNAPSHOT/core-task-impl-3.0.0-alpha2-SNAPSHOT.jar
[INFO] ------------------------------------------------------------------------
[ERROR] BUILD ERROR
[INFO] ------------------------------------------------------------------------
[INFO] MavenReportException: Error while creating archive:Exit code: 1 -
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/src/main/java/org/cytoscape/task/internal/select/AbstractSelectTask.java>:36:
cannot access org.cytoscape.task.AbstractNetworkTask
bad class file:
org/cytoscape/task/AbstractNetworkTask.class(org/cytoscape/task:AbstractNetworkTask.class)
unable to access file: corrupted zip file
Please remove or make sure it appears in the correct subdirectory of the
classpath.
import org.cytoscape.task.AbstractNetworkTask;
^
Command line was:/R1/tools/java/jdk1.6.0_20/jre/../bin/javadoc @options
@packages
[INFO] ------------------------------------------------------------------------
[INFO] For more information, run Maven with the -e switch
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 27 seconds
[INFO] Finished at: Sat Feb 12 20:04:00 EST 2011
[INFO] Final Memory: 71M/724M
[INFO] ------------------------------------------------------------------------
Sending e-mails to: [email protected]
channel stopped
[trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn
org.codehaus.sonar:sonar-maven-plugin:1.8:sonar
-Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar
-Dsonar.jdbc.password=deploysonar
-Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar
-Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true
[INFO] Scanning for projects...
WAGON_VERSION: 1.0-beta-2
[INFO] ------------------------------------------------------------------------
[INFO] Building org.cytoscape.core-task-impl
[INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar]
(aggregator-style)
[INFO] ------------------------------------------------------------------------
[INFO] [sonar:sonar]
[INFO] Sonar host: http://localhost:8021/sonar
[INFO] Sonar version: 2.4
[INFO] [sonar-core:internal]
[INFO] Database dialect class org.sonar.jpa.dialect.MySql
[INFO] ------------- Analyzing org.cytoscape.core-task-impl
[INFO] Selected quality profile : [name=Cytoscape,language=java]
[INFO] Configure maven plugins...
[INFO] Sensor JavaSourceImporter...
[INFO] Sensor JavaSourceImporter done: 902 ms
[INFO] Sensor AsynchronousMeasuresSensor...
[INFO] Sensor AsynchronousMeasuresSensor done: 34 ms
[INFO] Sensor SquidSensor...
[INFO] Java AST scan...
[INFO] Java AST scan done: 823 ms
[INFO] Java bytecode scan...
[INFO] Java bytecode scan done: 286 ms
[INFO] Squid extraction...
[INFO] Package design analysis...
[INFO] Package design analysis done: 13 ms
[INFO] Squid extraction done: 2180 ms
[INFO] Sensor SquidSensor done: 3460 ms
[INFO] Sensor FindbugsSensor...
[INFO] Execute Findbugs 1.3.9...
[INFO] Findbugs output report:
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/target/sonar/findbugs-result.xml>
[INFO] Execute Findbugs 1.3.9 done: 8859 ms
[INFO] Sensor FindbugsSensor done: 9073 ms
[INFO] Execute maven plugin cobertura-maven-plugin...
[INFO] ------------------------------------------------------------------------
[INFO] Building org.cytoscape.core-task-impl
[INFO] task-segment: [org.codehaus.mojo:cobertura-maven-plugin::cobertura]
[INFO] ------------------------------------------------------------------------
[INFO] Preparing cobertura:cobertura
[INFO] [resources:resources]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 2 resources
[INFO] Copying 0 resource
[INFO] [pax:compile]
[INFO] Nothing to compile - all classes are up to date
[INFO] [cobertura:instrument]
[INFO] Cobertura 1.9.4.1 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file
Instrumenting 113 files to
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/target/generated-classes/cobertura>
Cobertura: Saved information on 113 classes.
Instrument time: 3394ms
[INFO] Instrumentation was successful.
[INFO] [resources:testResources]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 3 resources
[INFO] [pax:testCompile]
[INFO] Nothing to compile - all classes are up to date
[INFO] [surefire:test]
[INFO] Surefire report directory:
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/target/surefire-reports>
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Running org.cytoscape.task.internal.session.SaveSessionAsTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.246 sec
Running org.cytoscape.task.internal.zoom.ZoomOutTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.027 sec
Running org.cytoscape.task.internal.zoom.FitSelectedTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.009 sec
Running org.cytoscape.task.internal.zoom.ZoomOutTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.062 sec
Running org.cytoscape.task.internal.select.AllFactoryTest
Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.07 sec
Running org.cytoscape.task.internal.zoom.ZoomInTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 sec
Running org.cytoscape.task.internal.setcurren.SetCurrentNetworkTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.019 sec
Running org.cytoscape.task.internal.select.InvertSelectedNodesTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.052 sec
Running org.cytoscape.task.internal.proxysettings.ProxySettingsTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.017 sec
Running org.cytoscape.task.internal.select.SelectAdjacentEdgesTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.013 sec
Running org.cytoscape.task.internal.select.DeselectAllEdgesTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.01 sec
Running org.cytoscape.task.internal.session.NewSessionTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 sec
Running org.cytoscape.task.internal.select.SelectAllTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.01 sec
Running org.cytoscape.task.internal.hide.HideSelectedNodesTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.033 sec
Running org.cytoscape.task.internal.select.DeselectAllTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.034 sec
Running org.cytoscape.task.internal.zoom.FitSelectedTaskTest
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.025 sec
Running org.cytoscape.task.internal.session.SaveSessionTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.067 sec
Running org.cytoscape.task.internal.title.EditNetworkTitleTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.034 sec
Running org.cytoscape.task.internal.select.SelectConnectedNodesTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.033 sec
Running
org.cytoscape.task.internal.loaddatatable.LoadDataTableTaskFactoryImplTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.05 sec
Running org.cytoscape.task.internal.select.InvertSelectedEdgesTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.075 sec
Running org.cytoscape.task.internal.loadnetwork.LoadNetworkURLTaskTest
Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 5.091 sec
Running org.cytoscape.task.internal.session.NewSessionTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 sec
Running org.cytoscape.task.internal.zoom.FitContentTaskTest
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 sec
Running org.cytoscape.task.internal.select.SelectFromFileListTaskTest
Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.028 sec
Running org.cytoscape.task.internal.select.SelectFirstNeighborsNodeViewTaskTest
Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.019 sec
Running org.cytoscape.task.internal.hide.HideSelectedEdgesTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec
Running org.cytoscape.task.internal.zoom.FitContentTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 sec
Running org.cytoscape.task.internal.select.SelectFirstNeighborsTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 sec
Running
org.cytoscape.task.internal.setcurren.SetCurrentNetworkTaskFactoryImplTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.02 sec
Running org.cytoscape.task.internal.creation.CloneNetworkTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.05 sec
Running org.cytoscape.task.internal.zoom.ZoomInTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.043 sec
Running org.cytoscape.task.internal.hide.UnHideAllNodesTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.034 sec
Running org.cytoscape.task.internal.select.DeselectAllNodesTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.067 sec
Running org.cytoscape.task.internal.select.SelectAllEdgesTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.034 sec
Running org.cytoscape.task.internal.loadnetwork.LoadNetworkFileTaskTest
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.025 sec
Running org.cytoscape.task.internal.title.EditNetworkTitleTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.052 sec
Running org.cytoscape.task.internal.hide.UnHideAllTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.033 sec
Running org.cytoscape.task.internal.session.OpenSessionTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.026 sec
Running org.cytoscape.task.internal.select.SelectAllNodesTaskTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.026 sec
Running org.cytoscape.task.internal.hide.HideSelectedTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.025 sec
Running org.cytoscape.task.internal.hide.UnHideAllEdgesTaskFactoryTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.033 sec
Results :
Tests run: 64, Failures: 0, Errors: 0, Skipped: 0
[INFO] [cobertura:cobertura]
[INFO] Cobertura 1.9.4.1 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file
Cobertura: Loaded information on 113 classes.
Report time: 684ms
[INFO] Cobertura Report generation was successful.
[INFO] Execute maven plugin cobertura-maven-plugin done: 17109 ms
[INFO] Sensor CoberturaSensor...
[INFO] parsing
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/target/site/cobertura/coverage.xml>
[INFO] Sensor CoberturaSensor done: 580 ms
[INFO] Sensor CpdSensor...
[INFO] Sensor CpdSensor done: 282 ms
[INFO] Sensor CheckstyleSensor...
[INFO] Execute Checkstyle 5.1...
[INFO] Checkstyle configuration:
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/target/sonar/checkstyle.xml>
[INFO] Execute Checkstyle 5.1 done: 1230 ms
[INFO] Sensor CheckstyleSensor done: 1254 ms
[INFO] Sensor PmdSensor...
[INFO] Execute PMD 4.2.5...
[INFO] Java version: 1.6
[INFO] PMD configuration:
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/target/sonar/pmd.xml>
[INFO] PMD output report:
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/target/sonar/pmd-result.xml>
[INFO] Execute PMD 4.2.5 done: 4355 ms
[INFO] Sensor PmdSensor done: 4449 ms
[INFO] Sensor ProfileSensor...
[INFO] Sensor ProfileSensor done: 16 ms
[INFO] Sensor ProjectLinksSensor...
[INFO] Sensor ProjectLinksSensor done: 5 ms
[INFO] Sensor VersionEventsSensor...
[INFO] Sensor VersionEventsSensor done: 37 ms
[INFO] Sensor Maven dependencies...
[INFO] Sensor Maven dependencies done: 464 ms
[INFO] Sensor SurefireSensor...
[INFO] parsing
<http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/target/surefire-reports>
[INFO] Sensor SurefireSensor done: 191 ms
[INFO] Execute decorators...
[INFO] ANALYSIS SUCCESSFUL, you can browse http://localhost:8021/sonar
[INFO] Database optimization...
[INFO] Deleting files data before Sat Feb 12 08:05:08 EST 2011
[INFO] Deleting unprocessed data before Sat Feb 12 08:05:09 EST 2011
[INFO] Database optimization done: 2125 ms
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESSFUL
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 57 seconds
[INFO] Finished at: Sat Feb 12 20:05:10 EST 2011
[INFO] Final Memory: 75M/713M
[INFO] ------------------------------------------------------------------------
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