Author: mes
Date: 2011-02-25 14:22:25 -0800 (Fri, 25 Feb 2011)
New Revision: 24236
Modified:
csplugins/trunk/ucsd/mes/genomespace-plugin/pom.xml
csplugins/trunk/ucsd/mes/genomespace-plugin/src/main/java/cytoscape/genomespace/DeleteFileInGenomeSpace.java
Log:
updates for cdk beta2
Modified: csplugins/trunk/ucsd/mes/genomespace-plugin/pom.xml
===================================================================
--- csplugins/trunk/ucsd/mes/genomespace-plugin/pom.xml 2011-02-25 22:21:12 UTC
(rev 24235)
+++ csplugins/trunk/ucsd/mes/genomespace-plugin/pom.xml 2011-02-25 22:22:25 UTC
(rev 24236)
@@ -51,7 +51,7 @@
<dependency>
<groupId>cytoscape</groupId>
<artifactId>application</artifactId>
- <version>2.8.0-beta4-SNAPSHOT</version>
+ <version>2.8.1</version>
<scope>provided</scope>
</dependency>
<dependency>
@@ -63,18 +63,25 @@
<dependency>
<groupId>com.sun.jersey</groupId>
<artifactId>jersey-json</artifactId>
- <version>1.3</version>
+ <version>1.5-ea09</version>
</dependency>
<dependency>
<groupId>cytoscape-temp</groupId>
<artifactId>genomespace-cdk</artifactId>
- <version>1.0-beta1</version>
+ <version>1.0-beta2</version>
</dependency>
<dependency>
<groupId>cytoscape-temp</groupId>
+ <artifactId>dm-messages</artifactId>
+ <version>1.0-beta2</version>
+ </dependency>
+ <!--
+ <dependency>
+ <groupId>cytoscape-temp</groupId>
<artifactId>gs-common-util</artifactId>
<version>1.0-beta1</version>
</dependency>
+ -->
</dependencies>
<repositories>
Modified:
csplugins/trunk/ucsd/mes/genomespace-plugin/src/main/java/cytoscape/genomespace/DeleteFileInGenomeSpace.java
===================================================================
---
csplugins/trunk/ucsd/mes/genomespace-plugin/src/main/java/cytoscape/genomespace/DeleteFileInGenomeSpace.java
2011-02-25 22:21:12 UTC (rev 24235)
+++
csplugins/trunk/ucsd/mes/genomespace-plugin/src/main/java/cytoscape/genomespace/DeleteFileInGenomeSpace.java
2011-02-25 22:22:25 UTC (rev 24236)
@@ -42,16 +42,17 @@
try {
// login to GenomeSpace
- GsSession client = new GsSession();
+ GsSession session = new GsSession();
String username = "test";
String password = "password";
- User user = client.login(username, password);
- logger.info("Logged in to GenomeSpace: " + client.isLoggedIn()
+ " as " + user.getUsername());
+ User user = session.login(username, password);
+ logger.info("Logged in to GenomeSpace: " + session.isLoggedIn()
+ " as " + user.getUsername());
// list the files present for this user
- Map<String,GsFile> files = GSUtils.getFileNameMap(
client.list() );
+ DataManagerClient dmClient = gsSession.getDataManagerClient();
+ GSDirectoryListing homeDirInfo =
dmClient.listDefaultDirectory();
- String selectedFile = getSelectedFile( files.keySet() );
+ String selectedFile = getSelectedFile( homeDirInfo.get list of
files );
// Delete the file from GenomeSpace
if (selectedFile != null && files.get(selectedFile) != null) {
--
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