Author: pwang
Date: 2011-03-01 14:32:04 -0800 (Tue, 01 Mar 2011)
New Revision: 24285
Added:
csplugins/trunk/ucsd/pwang/cy3samples/sample05a/src/main/java/org/cytoscape/sample/internal/Sample05aPlugin.java
csplugins/trunk/ucsd/pwang/cy3samples/sample05a/src/main/java/org/cytoscape/sample/internal/Sample05aTask.java
csplugins/trunk/ucsd/pwang/cy3samples/sample05a/src/main/java/org/cytoscape/sample/internal/Sample05aTaskFactory.java
Log:
Original creation
Added:
csplugins/trunk/ucsd/pwang/cy3samples/sample05a/src/main/java/org/cytoscape/sample/internal/Sample05aPlugin.java
===================================================================
---
csplugins/trunk/ucsd/pwang/cy3samples/sample05a/src/main/java/org/cytoscape/sample/internal/Sample05aPlugin.java
(rev 0)
+++
csplugins/trunk/ucsd/pwang/cy3samples/sample05a/src/main/java/org/cytoscape/sample/internal/Sample05aPlugin.java
2011-03-01 22:32:04 UTC (rev 24285)
@@ -0,0 +1,24 @@
+package org.cytoscape.sample.internal;
+
+import java.util.Dictionary;
+import java.util.Hashtable;
+import org.cytoscape.plugin.CyPlugin;
+import org.cytoscape.plugin.CyPluginAdapter;
+
+
+/**
+ * An implementation of CyPluginAdapter
+ */
+public class Sample05aPlugin extends CyPlugin {
+
+ public Sample05aPlugin(CyPluginAdapter a){
+ super(a);
+
+ Dictionary<String, String> dict = new Hashtable<String,
String>();
+ dict.put("title", "Sample5a");
+ dict.put("preferredMenu", "Plugins");
+ dict.put("menuGravity", "10.0");
+
+ a.getCyServiceRegistrar().registerService( new
Sample05aTaskFactory(a), Sample05aTaskFactory.class, dict);
+ }
+}
Added:
csplugins/trunk/ucsd/pwang/cy3samples/sample05a/src/main/java/org/cytoscape/sample/internal/Sample05aTask.java
===================================================================
---
csplugins/trunk/ucsd/pwang/cy3samples/sample05a/src/main/java/org/cytoscape/sample/internal/Sample05aTask.java
(rev 0)
+++
csplugins/trunk/ucsd/pwang/cy3samples/sample05a/src/main/java/org/cytoscape/sample/internal/Sample05aTask.java
2011-03-01 22:32:04 UTC (rev 24285)
@@ -0,0 +1,44 @@
+package org.cytoscape.sample.internal;
+
+import org.cytoscape.model.CyNetwork;
+import org.cytoscape.model.CyNode;
+import org.cytoscape.model.CyTableEntry;
+import org.cytoscape.plugin.CyPluginAdapter;
+import org.cytoscape.work.AbstractTask;
+import org.cytoscape.work.TaskMonitor;
+
+public class Sample05aTask extends AbstractTask {
+
+ private CyPluginAdapter adapter;
+
+ public Sample05aTask(CyPluginAdapter a) { //CyPluginAdapter adapter){
+ this.adapter = adapter;
+
+ System.out.println("\nEntering Sample05aTask constructor...\n");
+ }
+
+ public void run(TaskMonitor monitor) {
+ // Create an empty network
+ CyNetwork myNet = adapter.getCyNetworkFactory().getInstance();
+ myNet.getCyRow().set(CyTableEntry.NAME, "My network");
+
//adapter.namingUtil.getSuggestedNetworkTitle("My Network"));
+
+ // Add two nodes to the network
+ CyNode node1 = myNet.addNode();
+ CyNode node2 = myNet.addNode();
+
+ // Add an edge
+ myNet.addEdge(node1, node2, true);
+
+ adapter.getCyNetworkManager().addNetwork(myNet);
+
+ //// The following code will destroy a network
+ boolean destroyNetwork = false;
+ if (destroyNetwork){
+ // Get current network
+ CyNetwork currNet =
adapter.getCyApplicationManager().getCurrentNetwork();
+ // Destroy it
+ adapter.getCyNetworkManager().destroyNetwork(currNet);
+ }
+ }
+}
Added:
csplugins/trunk/ucsd/pwang/cy3samples/sample05a/src/main/java/org/cytoscape/sample/internal/Sample05aTaskFactory.java
===================================================================
---
csplugins/trunk/ucsd/pwang/cy3samples/sample05a/src/main/java/org/cytoscape/sample/internal/Sample05aTaskFactory.java
(rev 0)
+++
csplugins/trunk/ucsd/pwang/cy3samples/sample05a/src/main/java/org/cytoscape/sample/internal/Sample05aTaskFactory.java
2011-03-01 22:32:04 UTC (rev 24285)
@@ -0,0 +1,17 @@
+package org.cytoscape.sample.internal;
+
+import org.cytoscape.plugin.CyPluginAdapter;
+import org.cytoscape.work.TaskFactory;
+import org.cytoscape.work.TaskIterator;
+
+public class Sample05aTaskFactory implements TaskFactory {
+
+ private CyPluginAdapter a;
+ public Sample05aTaskFactory(CyPluginAdapter a){
+ this.a = a;
+ }
+
+ public TaskIterator getTaskIterator(){
+ return new TaskIterator(new Sample05aTask(a));
+ }
+}
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