See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Editor%20Impl/1190/changes>
Changes: [mes] added better support for groups/metanodes based on mini retreat discussion ------------------------------------------ Started by an SCM change Checking out http://chianti.ucsd.edu/svn/core3/editor-impl/trunk A osgi.bnd A src A src/main A src/main/java A src/main/java/org A src/main/java/org/cytoscape A src/main/java/org/cytoscape/editor A src/main/java/org/cytoscape/editor/internal A src/main/java/org/cytoscape/editor/internal/SIFInterpreterTaskFactory.java A src/main/java/org/cytoscape/editor/internal/DropNodeViewTaskFactoryImpl.java A src/main/java/org/cytoscape/editor/internal/gui A src/main/java/org/cytoscape/editor/internal/gui/ShapePalette.java A src/main/java/org/cytoscape/editor/internal/gui/BasicCytoShapeTransferHandler.java A src/main/java/org/cytoscape/editor/internal/gui/DragSourceContextCursorSetter.java A src/main/java/org/cytoscape/editor/internal/gui/EditorCytoPanelComponent.java A src/main/java/org/cytoscape/editor/internal/gui/StringTransferHandler.java A src/main/java/org/cytoscape/editor/internal/gui/BasicCytoShapeEntity.java A src/main/java/org/cytoscape/editor/internal/EditorPanelSelectedListener.java A src/main/java/org/cytoscape/editor/internal/DropNetworkViewTaskFactoryImpl.java A src/main/java/org/cytoscape/editor/internal/AddNestedNetworkTask.java A src/main/java/org/cytoscape/editor/internal/SIFInterpreterTask.java A src/main/java/org/cytoscape/editor/internal/DropNetworkViewTask.java A src/main/java/org/cytoscape/editor/internal/CurrentNetworkViewListener.java A src/main/resources A src/main/resources/META-INF A src/main/resources/META-INF/spring A src/main/resources/META-INF/spring/bundle-context-osgi.xml A src/main/resources/META-INF/spring/bundle-context.xml A src/main/resources/images AU src/main/resources/images/edge.png AU src/main/resources/images/node.png AU src/main/resources/images/network.png A pom.xml U . At revision 24345 No emails were triggered. Parsing POMs [trunk] $ java -cp /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-agent-1.385.jar:/R1/tools/maven/apache-maven-2.1.0/boot/classworlds-1.1.jar hudson.maven.agent.Main /R1/tools/maven/apache-maven-2.1.0 /R1/resources/webservers/tomcat_2/webapps/hudson/WEB-INF/lib/remoting-1.385.jar /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-interceptor-1.385.jar 49513 /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven2.1-interceptor-1.2.jar <===[HUDSON REMOTING CAPACITY]===> channel started Executing Maven: -B -f <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Editor%20Impl/ws/trunk/pom.xml> deploy [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.editor-impl [INFO] task-segment: [deploy] [INFO] ------------------------------------------------------------------------ [INFO] [resources:resources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 5 resources [INFO] [pax:compile] [INFO] Compiling 14 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Editor%20Impl/ws/trunk/target/classes> [INFO] [recovering meta-data] [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Editor%20Impl/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Editor Impl/modules/org.cytoscape$editor-impl/builds/2011-03-08_19-01-10/archive/org.cytoscape/editor-impl/3.0.0-alpha2-SNAPSHOT/pom.xml [INFO] ------------------------------------------------------------------------ [ERROR] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Compilation failure <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Editor%20Impl/ws/trunk/src/main/java/org/cytoscape/editor/internal/AddNestedNetworkTask.java>:[50,3] cannot find symbol symbol : method setNetwork(org.cytoscape.model.CyNetwork) location: interface org.cytoscape.model.CyNode [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 5 seconds [INFO] Finished at: Tue Mar 08 19:01:18 EST 2011 [INFO] Final Memory: 49M/492M [INFO] ------------------------------------------------------------------------ Waiting for Hudson to finish collecting data Sending e-mails to: [email protected] channel stopped [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.editor-impl [INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar] [INFO] Sonar host: http://localhost:8021/sonar [INFO] Sonar version: 2.4 [INFO] [sonar-core:internal] [INFO] Database dialect class org.sonar.jpa.dialect.MySql [INFO] ------------- Analyzing org.cytoscape.editor-impl [INFO] Selected quality profile : [name=Cytoscape,language=java] [INFO] Configure maven plugins... [INFO] Sensor JavaSourceImporter... [INFO] Sensor JavaSourceImporter done: 503 ms [INFO] Sensor AsynchronousMeasuresSensor... [INFO] Sensor AsynchronousMeasuresSensor done: 26 ms [INFO] Sensor SquidSensor... [INFO] Java AST scan... [INFO] Java AST scan done: 482 ms [INFO] Java bytecode scan... [WARN] Class 'org/cytoscape/editor/internal/gui/StringTransferHandler' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/gui/DragSourceContextCursorSetter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/CurrentNetworkViewListener' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/gui/BasicCytoShapeTransferHandler' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/gui/ShapePalette$PaletteListTransferHandler' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/gui/EditorCytoPanelComponent' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/gui/BasicCytoShapeEntity$EntityDragSourceListener' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/gui/ShapePalette$1' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/gui/BasicCytoShapeEntity' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/DropNodeViewTaskFactoryImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/gui/ShapePalette' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/DropNetworkViewTaskFactoryImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/gui/ShapePalette$MyCellRenderer' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/DropNetworkViewTask' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/EditorPanelSelectedListener' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/SIFInterpreterTask' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/gui/BasicCytoShapeEntity$1' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/AddNestedNetworkTask' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/SIFInterpreterTaskFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/gui/BasicCytoShapeTransferHandler$BasicCytoShapeTransferable' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/gui/StringTransferHandler' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/gui/DragSourceContextCursorSetter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/CurrentNetworkViewListener' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/gui/BasicCytoShapeTransferHandler' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/gui/ShapePalette$PaletteListTransferHandler' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/gui/EditorCytoPanelComponent' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/gui/BasicCytoShapeEntity$EntityDragSourceListener' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/gui/ShapePalette$1' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/gui/BasicCytoShapeEntity' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/DropNodeViewTaskFactoryImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/gui/ShapePalette' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/DropNetworkViewTaskFactoryImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/gui/ShapePalette$MyCellRenderer' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/DropNetworkViewTask' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/EditorPanelSelectedListener' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/SIFInterpreterTask' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/gui/BasicCytoShapeEntity$1' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/AddNestedNetworkTask' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/SIFInterpreterTaskFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/gui/BasicCytoShapeTransferHandler$BasicCytoShapeTransferable' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/gui/StringTransferHandler' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/gui/DragSourceContextCursorSetter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/CurrentNetworkViewListener' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/gui/BasicCytoShapeTransferHandler' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/gui/ShapePalette$PaletteListTransferHandler' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/gui/EditorCytoPanelComponent' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/gui/BasicCytoShapeEntity$EntityDragSourceListener' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/gui/ShapePalette$1' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/gui/BasicCytoShapeEntity' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/DropNodeViewTaskFactoryImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/gui/ShapePalette' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/DropNetworkViewTaskFactoryImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/gui/ShapePalette$MyCellRenderer' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/DropNetworkViewTask' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/EditorPanelSelectedListener' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/SIFInterpreterTask' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/gui/BasicCytoShapeEntity$1' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/AddNestedNetworkTask' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/SIFInterpreterTaskFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/editor/internal/gui/BasicCytoShapeTransferHandler$BasicCytoShapeTransferable' is not accessible through the ClassLoader. [INFO] Java bytecode scan done: 38 ms [INFO] Squid extraction... [INFO] Package design analysis... [INFO] Package design analysis done: 24 ms [INFO] Squid extraction done: 402 ms [INFO] Sensor SquidSensor done: 978 ms [INFO] Sensor FindbugsSensor... [INFO] Execute Findbugs 1.3.9... [INFO] Findbugs output report: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Editor%20Impl/ws/trunk/target/sonar/findbugs-result.xml> [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Can not execute Sonar Embedded error: Can not execute Findbugs No classes found to analyze in <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Editor%20Impl/ws/trunk/target/classes> */R1/resources/M2_MAVEN/repository/org/cytoscape/model-api/3.0.0-alpha3-SNAPSHOT/model-api-3.0.0-alpha3-SNAPSHOT.jar */R1/resources/M2_MAVEN/repository/org/cytoscape/event-api/3.0.0-alpha3/event-api-3.0.0-alpha3.jar */R1/resources/M2_MAVEN/repository/org/cytoscape/presentation-api/3.0.0-alpha2/presentation-api-3.0.0-alpha2.jar */R1/resources/M2_MAVEN/repository/org/cytoscape/viewmodel-api/3.0.0-alpha3/viewmodel-api-3.0.0-alpha3.jar */R1/resources/M2_MAVEN/repository/org/cytoscape/dnd-api/3.0.0-alpha1/dnd-api-3.0.0-alpha1.jar */R1/resources/M2_MAVEN/repository/org/cytoscape/core-task-api/3.0.0-alpha2/core-task-api-3.0.0-alpha2.jar */R1/resources/M2_MAVEN/repository/org/cytoscape/work-api/3.0.0-alpha1/work-api-3.0.0-alpha1.jar */R1/resources/M2_MAVEN/repository/org/ops4j/pax/logging/pax-logging-api/1.5.2/pax-logging-api-1.5.2.jar */R1/resources/M2_MAVEN/repository/org/cytoscape/swing-application-api/3.0.0-alpha1/swing-application-api-3.0.0-alpha1.jar */R1/resources/M2_MAVEN/repository/cytoscape-sun/jhall/1.0/jhall-1.0.jar */R1/resources/M2_MAVEN/repository/org/cytoscape/session-api/3.0.0-alpha2/session-api-3.0.0-alpha2.jar */R1/resources/M2_MAVEN/repository/org/cytoscape/vizmap-api/3.0.0-alpha2/vizmap-api-3.0.0-alpha2.jar */R1/resources/M2_MAVEN/repository/org/cytoscape/property-api/3.0.0-alpha2/property-api-3.0.0-alpha2.jar */tmp/findbugs2116281540146500129.jar */tmp/findbugs3809208767235982827.jar */R1/tools/java/jdk1.6.0_20/jre/lib/resources.jar */R1/tools/java/jdk1.6.0_20/jre/lib/rt.jar */R1/tools/java/jdk1.6.0_20/jre/lib/jsse.jar */R1/tools/java/jdk1.6.0_20/jre/lib/jce.jar */R1/tools/java/jdk1.6.0_20/jre/lib/charsets.jar */R1/tools/java/jdk1.6.0_20/jre/lib/ext/dnsns.jar */R1/tools/java/jdk1.6.0_20/jre/lib/ext/localedata.jar */R1/tools/java/jdk1.6.0_20/jre/lib/ext/sunjce_provider.jar */R1/tools/java/jdk1.6.0_20/jre/lib/ext/sunpkcs11.jar [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 11 seconds [INFO] Finished at: Tue Mar 08 19:01:36 EST 2011 [INFO] Final Memory: 41M/600M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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