See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20PSI-MI%20impl/439/>
------------------------------------------ Started by timer Started by an SCM change Checking out http://chianti.ucsd.edu/svn/core3/psi-mi-impl/trunk A .classpath A osgi.bnd A .project A src A src/test A src/test/java A src/test/java/org A src/test/java/org/cytoscape A src/test/java/org/cytoscape/psi_mi A src/test/java/org/cytoscape/psi_mi/internal A src/test/java/org/cytoscape/psi_mi/internal/model A src/test/java/org/cytoscape/psi_mi/internal/model/InteractorTest.java A src/test/java/org/cytoscape/psi_mi/internal/cyto_mapper AU src/test/java/org/cytoscape/psi_mi/internal/cyto_mapper/MapToCytoscapeTest.java AU src/test/java/org/cytoscape/psi_mi/internal/cyto_mapper/MapFromCytoscapeTest.java A src/test/java/org/cytoscape/psi_mi/internal/cyto_mapper/package.html A src/test/java/org/cytoscape/psi_mi/internal/data_mapper AU src/test/java/org/cytoscape/psi_mi/internal/data_mapper/MapInteractionsToPsiOneTest.java A src/test/java/org/cytoscape/psi_mi/internal/data_mapper/MapPsiOneToInteractionsTest.java A src/test/java/org/cytoscape/psi_mi/internal/data_mapper/MapInteractionsToPsiTwoFiveTest.java A src/test/java/org/cytoscape/psi_mi/internal/data_mapper/MapPsiTwoFiveToInteractionsTest.java AU src/test/java/org/cytoscape/psi_mi/internal/data_mapper/package.html A src/test/java/org/cytoscape/psi_mi/internal/plugin AU src/test/java/org/cytoscape/psi_mi/internal/plugin/PsiMiCyFileFilterTest.java AU src/test/java/org/cytoscape/psi_mi/internal/plugin/PsiMiNetworkViewReaderTest.java A src/test/java/org/cytoscape/psi_mi/internal/plugin/PsiMiTabReaderTest.java A src/test/resources A src/test/resources/testData AU src/test/resources/testData/psi_malformed.xml AU src/test/resources/testData/psi_sample_2_5_1.xml AU src/test/resources/testData/psi_sample_2_5_2.xml AU src/test/resources/testData/yeast_normalised.xml A src/test/resources/testData/BIOGRID-ORGANISM-Bos_taurus-3.1.74.mitab A src/test/resources/testData/cpath_p53.xml AU src/test/resources/testData/galFiltered.xgmml AU src/test/resources/testData/yeast_denormalised.xml AU src/test/resources/testData/dip_sample.xml AU src/test/resources/testData/hprd.xml AU src/test/resources/testData/psi_sample1.xml A src/test/resources/testData/bio_grid.xml AU src/test/resources/testData/psi_sample2.xml A src/main A src/main/java A src/main/java/org A src/main/java/org/cytoscape A src/main/java/org/cytoscape/psi_mi A src/main/java/org/cytoscape/psi_mi/internal A src/main/java/org/cytoscape/psi_mi/internal/model A src/main/java/org/cytoscape/psi_mi/internal/model/Interaction.java A src/main/java/org/cytoscape/psi_mi/internal/model/ExternalReference.java A src/main/java/org/cytoscape/psi_mi/internal/model/Interactor.java A src/main/java/org/cytoscape/psi_mi/internal/model/vocab A src/main/java/org/cytoscape/psi_mi/internal/model/vocab/GoVocab.java A src/main/java/org/cytoscape/psi_mi/internal/model/vocab/CommonVocab.java A src/main/java/org/cytoscape/psi_mi/internal/model/vocab/InteractorVocab.java A src/main/java/org/cytoscape/psi_mi/internal/model/vocab/InteractionVocab.java AU src/main/java/org/cytoscape/psi_mi/internal/model/vocab/package.html A src/main/java/org/cytoscape/psi_mi/internal/model/AttributeBag.java AU src/main/java/org/cytoscape/psi_mi/internal/model/package.html A src/main/java/org/cytoscape/psi_mi/internal/cyto_mapper AU src/main/java/org/cytoscape/psi_mi/internal/cyto_mapper/MapToCytoscape.java AU src/main/java/org/cytoscape/psi_mi/internal/cyto_mapper/MapFromCytoscape.java A src/main/java/org/cytoscape/psi_mi/internal/cyto_mapper/package.html A src/main/java/org/cytoscape/psi_mi/internal/data_mapper A src/main/java/org/cytoscape/psi_mi/internal/data_mapper/MapInteractionsToPsiOne.java A src/main/java/org/cytoscape/psi_mi/internal/data_mapper/MapPsiOneToInteractions.java A src/main/java/org/cytoscape/psi_mi/internal/data_mapper/MapperUtil.java A src/main/java/org/cytoscape/psi_mi/internal/data_mapper/MapInteractionsToPsiTwoFive.java A src/main/java/org/cytoscape/psi_mi/internal/data_mapper/MapPsiTwoFiveToInteractions.java A src/main/java/org/cytoscape/psi_mi/internal/data_mapper/MapperException.java A src/main/java/org/cytoscape/psi_mi/internal/data_mapper/Mapper.java AU src/main/java/org/cytoscape/psi_mi/internal/data_mapper/SchemaMapper.java AU src/main/java/org/cytoscape/psi_mi/internal/data_mapper/package.html A src/main/java/org/cytoscape/psi_mi/internal/util A src/main/java/org/cytoscape/psi_mi/internal/util/AttributeUtil.java A src/main/java/org/cytoscape/psi_mi/internal/util/DataServiceException.java A src/main/java/org/cytoscape/psi_mi/internal/util/ContentReader.java AU src/main/java/org/cytoscape/psi_mi/internal/util/package.html A src/main/java/org/cytoscape/psi_mi/internal/plugin AU src/main/java/org/cytoscape/psi_mi/internal/plugin/PsiMiNetworkWriterFactory.java A src/main/java/org/cytoscape/psi_mi/internal/plugin/PsiMiNetworkViewTaskFactory.java A src/main/java/org/cytoscape/psi_mi/internal/plugin/PsiMiCyFileFilter.java A src/main/java/org/cytoscape/psi_mi/internal/plugin/PsiMiTabReaderFactory.java A src/main/java/org/cytoscape/psi_mi/internal/plugin/PsiMiTabParser.java AU src/main/java/org/cytoscape/psi_mi/internal/plugin/SchemaVersion.java A src/main/java/org/cytoscape/psi_mi/internal/plugin/PsiMiNetworkViewReader.java A src/main/java/org/cytoscape/psi_mi/internal/plugin/PsiMiTabCyFileFilter.java A src/main/java/org/cytoscape/psi_mi/internal/plugin/PsiMiTabReader.java AU src/main/java/org/cytoscape/psi_mi/internal/plugin/PsiMiWriter.java A src/main/java/org/cytoscape/psi_mi/internal/plugin/package.html A src/main/resources A src/main/resources/META-INF A src/main/resources/META-INF/spring A src/main/resources/META-INF/spring/bundle-context-osgi.xml A src/main/resources/META-INF/spring/bundle-context.xml A src/main/resources/org A src/main/resources/org/cytoscape A src/main/resources/org/cytoscape/internal A src/main/resources/org/cytoscape/internal/psi_mi A src/main/resources/org/cytoscape/internal/psi_mi/plugin A src/main/resources/org/cytoscape/internal/psi_mi/plugin/plugin.props A src/main/xsd AU src/main/xsd/MIF25.xsd AU src/main/xsd/MIF1.xsd A pom.xml A .settings A .settings/org.eclipse.jdt.core.prefs A .settings/org.maven.ide.eclipse.prefs U . At revision 24432 no revision recorded for http://chianti.ucsd.edu/svn/core3/psi-mi-impl/trunk in the previous build No emails were triggered. Parsing POMs [trunk] $ java -cp /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-agent-1.385.jar:/R1/tools/maven/apache-maven-2.1.0/boot/classworlds-1.1.jar hudson.maven.agent.Main /R1/tools/maven/apache-maven-2.1.0 /R1/resources/webservers/tomcat_2/webapps/hudson/WEB-INF/lib/remoting-1.385.jar /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-interceptor-1.385.jar 43623 /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven2.1-interceptor-1.2.jar channel started <===[HUDSON REMOTING CAPACITY]===> Executing Maven: -B -f <http://cytoscape.wodaklab.org/hudson/job/Cy3%20PSI-MI%20impl/ws/trunk/pom.xml> deploy [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 Downloading: http://download.java.net/maven/2/org/ops4j/maven-pax-plugin/${maven-pax-plugin.version}/maven-pax-plugin-${maven-pax-plugin.version}.pom [INFO] Unable to find resource 'org.ops4j:maven-pax-plugin:pom:${maven-pax-plugin.version}' in repository maven2-repository.dev.java.net (http://download.java.net/maven/2) Downloading: http://download.java.net/maven/1/org.ops4j/poms/maven-pax-plugin-${maven-pax-plugin.version}.pom [INFO] Unable to find resource 'org.ops4j:maven-pax-plugin:pom:${maven-pax-plugin.version}' in repository maven-repository.dev.java.net (http://download.java.net/maven/1) Downloading: http://cytoscape.wodaklab.org/nexus/content/groups/public/org/ops4j/maven-pax-plugin/${maven-pax-plugin.version}/maven-pax-plugin-${maven-pax-plugin.version}.pom [INFO] Unable to find resource 'org.ops4j:maven-pax-plugin:pom:${maven-pax-plugin.version}' in repository central (http://repo1.maven.org/maven2) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/releases//org/ops4j/maven-pax-plugin/${maven-pax-plugin.version}/maven-pax-plugin-${maven-pax-plugin.version}.pom [INFO] Unable to find resource 'org.ops4j:maven-pax-plugin:pom:${maven-pax-plugin.version}' in repository cytoscape_releases (http://cytoscape.wodaklab.org/nexus/content/repositories/releases/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty//org/ops4j/maven-pax-plugin/${maven-pax-plugin.version}/maven-pax-plugin-${maven-pax-plugin.version}.pom [INFO] Unable to find resource 'org.ops4j:maven-pax-plugin:pom:${maven-pax-plugin.version}' in repository cytoscape_thirdparty (http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-release//org/ops4j/maven-pax-plugin/${maven-pax-plugin.version}/maven-pax-plugin-${maven-pax-plugin.version}.pom [INFO] Unable to find resource 'org.ops4j:maven-pax-plugin:pom:${maven-pax-plugin.version}' in repository cytoscape_biopax_release (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-release/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/ops4j-release//org/ops4j/maven-pax-plugin/${maven-pax-plugin.version}/maven-pax-plugin-${maven-pax-plugin.version}.pom [INFO] Unable to find resource 'org.ops4j:maven-pax-plugin:pom:${maven-pax-plugin.version}' in repository ops4j-release (http://cytoscape.wodaklab.org/nexus/content/repositories/ops4j-release/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi//org/ops4j/maven-pax-plugin/${maven-pax-plugin.version}/maven-pax-plugin-${maven-pax-plugin.version}.pom [INFO] Unable to find resource 'org.ops4j:maven-pax-plugin:pom:${maven-pax-plugin.version}' in repository spring-osgi (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external//org/ops4j/maven-pax-plugin/${maven-pax-plugin.version}/maven-pax-plugin-${maven-pax-plugin.version}.pom [INFO] Unable to find resource 'org.ops4j:maven-pax-plugin:pom:${maven-pax-plugin.version}' in repository spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external/) Downloading: http://cytoscape.wodaklab.org/nexus/content/groups/public/org/ops4j/maven-pax-plugin/${maven-pax-plugin.version}/maven-pax-plugin-${maven-pax-plugin.version}.pom [INFO] Unable to find resource 'org.ops4j:maven-pax-plugin:pom:${maven-pax-plugin.version}' in repository central (http://repo1.maven.org/maven2) [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Error building POM (may not be this project's POM). Project ID: org.ops4j:maven-pax-plugin Reason: POM 'org.ops4j:maven-pax-plugin' not found in repository: Unable to download the artifact from any repository org.ops4j:maven-pax-plugin:pom:${maven-pax-plugin.version} from the specified remote repositories: cytoscape_releases (http://cytoscape.wodaklab.org/nexus/content/repositories/releases/), cytoscape_biopax_release (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-release/), cytoscape_biopax_snapshot (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/), cytoscape_thirdparty (http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty/), ops4j-release (http://cytoscape.wodaklab.org/nexus/content/repositories/ops4j-release/), cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/), maven2-repository.dev.java.net (http://download.java.net/maven/2), spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external/), Nexus (http://cytoscape.wodaklab.org/nexus/content/groups/public), maven-repository.dev.java.net (http://download.java.net/maven/1), spring-osgi (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi/) for project org.ops4j:maven-pax-plugin [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: < 1 second [INFO] Finished at: Mon Mar 14 20:08:10 EDT 2011 [INFO] Final Memory: 7M/151M [INFO] ------------------------------------------------------------------------ channel stopped [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 Downloading: http://download.java.net/maven/2/org/ops4j/maven-pax-plugin/${maven-pax-plugin.version}/maven-pax-plugin-${maven-pax-plugin.version}.pom [INFO] Unable to find resource 'org.ops4j:maven-pax-plugin:pom:${maven-pax-plugin.version}' in repository maven2-repository.dev.java.net (http://download.java.net/maven/2) Downloading: http://download.java.net/maven/1/org.ops4j/poms/maven-pax-plugin-${maven-pax-plugin.version}.pom [INFO] Unable to find resource 'org.ops4j:maven-pax-plugin:pom:${maven-pax-plugin.version}' in repository maven-repository.dev.java.net (http://download.java.net/maven/1) Downloading: http://cytoscape.wodaklab.org/nexus/content/groups/public/org/ops4j/maven-pax-plugin/${maven-pax-plugin.version}/maven-pax-plugin-${maven-pax-plugin.version}.pom [INFO] Unable to find resource 'org.ops4j:maven-pax-plugin:pom:${maven-pax-plugin.version}' in repository central (http://repo1.maven.org/maven2) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/releases//org/ops4j/maven-pax-plugin/${maven-pax-plugin.version}/maven-pax-plugin-${maven-pax-plugin.version}.pom [INFO] Unable to find resource 'org.ops4j:maven-pax-plugin:pom:${maven-pax-plugin.version}' in repository cytoscape_releases (http://cytoscape.wodaklab.org/nexus/content/repositories/releases/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty//org/ops4j/maven-pax-plugin/${maven-pax-plugin.version}/maven-pax-plugin-${maven-pax-plugin.version}.pom [INFO] Unable to find resource 'org.ops4j:maven-pax-plugin:pom:${maven-pax-plugin.version}' in repository cytoscape_thirdparty (http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-release//org/ops4j/maven-pax-plugin/${maven-pax-plugin.version}/maven-pax-plugin-${maven-pax-plugin.version}.pom [INFO] Unable to find resource 'org.ops4j:maven-pax-plugin:pom:${maven-pax-plugin.version}' in repository cytoscape_biopax_release (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-release/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/ops4j-release//org/ops4j/maven-pax-plugin/${maven-pax-plugin.version}/maven-pax-plugin-${maven-pax-plugin.version}.pom [INFO] Unable to find resource 'org.ops4j:maven-pax-plugin:pom:${maven-pax-plugin.version}' in repository ops4j-release (http://cytoscape.wodaklab.org/nexus/content/repositories/ops4j-release/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi//org/ops4j/maven-pax-plugin/${maven-pax-plugin.version}/maven-pax-plugin-${maven-pax-plugin.version}.pom [INFO] Unable to find resource 'org.ops4j:maven-pax-plugin:pom:${maven-pax-plugin.version}' in repository spring-osgi (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi/) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external//org/ops4j/maven-pax-plugin/${maven-pax-plugin.version}/maven-pax-plugin-${maven-pax-plugin.version}.pom [INFO] Unable to find resource 'org.ops4j:maven-pax-plugin:pom:${maven-pax-plugin.version}' in repository spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external/) Downloading: http://cytoscape.wodaklab.org/nexus/content/groups/public/org/ops4j/maven-pax-plugin/${maven-pax-plugin.version}/maven-pax-plugin-${maven-pax-plugin.version}.pom [INFO] Unable to find resource 'org.ops4j:maven-pax-plugin:pom:${maven-pax-plugin.version}' in repository central (http://repo1.maven.org/maven2) [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Error building POM (may not be this project's POM). Project ID: org.ops4j:maven-pax-plugin Reason: POM 'org.ops4j:maven-pax-plugin' not found in repository: Unable to download the artifact from any repository org.ops4j:maven-pax-plugin:pom:${maven-pax-plugin.version} from the specified remote repositories: cytoscape_releases (http://cytoscape.wodaklab.org/nexus/content/repositories/releases/), cytoscape_biopax_release (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-release/), cytoscape_biopax_snapshot (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/), cytoscape_thirdparty (http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty/), ops4j-release (http://cytoscape.wodaklab.org/nexus/content/repositories/ops4j-release/), cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/), maven2-repository.dev.java.net (http://download.java.net/maven/2), spring-osgi-snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external/), Nexus (http://cytoscape.wodaklab.org/nexus/content/groups/public), maven-repository.dev.java.net (http://download.java.net/maven/1), spring-osgi (http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi/) for project org.ops4j:maven-pax-plugin [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: < 1 second [INFO] Finished at: Mon Mar 14 20:08:12 EDT 2011 [INFO] Final Memory: 8M/151M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/cytoscape-cvs?hl=en.
