See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/1558/>
------------------------------------------ Started by timer Checking out http://chianti.ucsd.edu/svn/core3/model-impl/trunk A impl A impl/osgi.bnd A impl/src A impl/src/test A impl/src/test/java A impl/src/test/java/org A impl/src/test/java/org/cytoscape A impl/src/test/java/org/cytoscape/model A impl/src/test/java/org/cytoscape/model/IdentifiableTest.java A impl/src/test/java/org/cytoscape/model/CyEdgeTest.java A impl/src/test/java/org/cytoscape/model/CyNodeTest.java A impl/src/test/java/org/cytoscape/model/CyTableTest.java A impl/src/test/java/org/cytoscape/model/subnetwork A impl/src/test/java/org/cytoscape/model/subnetwork/CyRootNetworkCyNetworkTest.java A impl/src/test/java/org/cytoscape/model/subnetwork/CySubNetworkTest.java A impl/src/test/java/org/cytoscape/model/subnetwork/CySubNetworkCyNetworkTest.java A impl/src/test/java/org/cytoscape/model/subnetwork/CyRootNetworkTest.java A impl/src/test/java/org/cytoscape/model/subnetwork/CySubNetworkCyTableManagerTest.java A impl/src/test/java/org/cytoscape/model/CyNetworkTest.java A impl/src/test/java/org/cytoscape/model/GraphObjectTest.java A impl/src/test/java/org/cytoscape/model/internal A impl/src/test/java/org/cytoscape/model/internal/tsort A impl/src/test/java/org/cytoscape/model/internal/tsort/TopologicalSortTest.java A impl/src/test/java/org/cytoscape/model/TestCyNetworkFactory.java A impl/src/test/java/org/cytoscape/model/CyTableManagerTest.java A impl/src/main A impl/src/main/java A impl/src/main/java/org A impl/src/main/java/org/cytoscape A impl/src/main/java/org/cytoscape/model A impl/src/main/java/org/cytoscape/model/internal A impl/src/main/java/org/cytoscape/model/internal/CyNetworkFactoryImpl.java A impl/src/main/java/org/cytoscape/model/internal/CyTableManagerImpl.java A impl/src/main/java/org/cytoscape/model/internal/ArrayGraph.java A impl/src/main/java/org/cytoscape/model/internal/CyNetworkManagerImpl.java A impl/src/main/java/org/cytoscape/model/internal/CyRootNetworkFactoryImpl.java A impl/src/main/java/org/cytoscape/model/internal/CyNodeImpl.java A impl/src/main/java/org/cytoscape/model/internal/VirtualColumn.java A impl/src/main/java/org/cytoscape/model/internal/EdgePointer.java A impl/src/main/java/org/cytoscape/model/internal/CyTableImpl.java A impl/src/main/java/org/cytoscape/model/internal/ArraySubGraph.java A impl/src/main/java/org/cytoscape/model/internal/CyColumnImpl.java A impl/src/main/java/org/cytoscape/model/internal/AttribTopoGraphNode.java A impl/src/main/java/org/cytoscape/model/internal/EqnSupport.java A impl/src/main/java/org/cytoscape/model/internal/CyTableRowUpdateServiceImpl.java A impl/src/main/java/org/cytoscape/model/internal/CyEdgeImpl.java A impl/src/main/java/org/cytoscape/model/internal/NodePointer.java A impl/src/main/java/org/cytoscape/model/internal/CyTableEntryImpl.java A impl/src/main/java/org/cytoscape/model/internal/tsort A impl/src/main/java/org/cytoscape/model/internal/tsort/TopologicalSort.java A impl/src/main/java/org/cytoscape/model/internal/tsort/TopoGraphNode.java A impl/src/main/java/org/cytoscape/model/internal/CyTableFactoryImpl.java A impl/src/main/javadoc A impl/src/main/javadoc/org A impl/src/main/javadoc/org/cytoscape A impl/src/main/javadoc/org/cytoscape/model A impl/src/main/javadoc/org/cytoscape/model/subnetwork A impl/src/main/javadoc/org/cytoscape/model/subnetwork/package.html A impl/src/main/javadoc/org/cytoscape/model/events A impl/src/main/javadoc/org/cytoscape/model/events/package.html A impl/src/main/javadoc/org/cytoscape/model/package.html A impl/src/main/resources A impl/src/main/resources/META-INF A impl/src/main/resources/META-INF/spring A impl/src/main/resources/META-INF/spring/bundle-context-osgi.xml A impl/src/main/resources/META-INF/spring/bundle-context.xml A impl/src/main/resources/readme.txt A impl/pom.xml A performance A performance/baseline.xml A performance/src A performance/src/test A performance/src/test/java A performance/src/test/java/org A performance/src/test/java/org/cytoscape A performance/src/test/java/org/cytoscape/model A performance/src/test/java/org/cytoscape/model/ServiceConfigurationTest.java A performance/pom.xml A pom.xml A it A it/src A it/src/test A it/src/test/java A it/src/test/java/org A it/src/test/java/org/cytoscape A it/src/test/java/org/cytoscape/model A it/src/test/java/org/cytoscape/model/ServiceConfigurationTest.java A it/pom.xml U . At revision 24571 WARNING: clock of the subversion server appears to be out of sync. This can result in inconsistent check out behavior. no change for http://chianti.ucsd.edu/svn/core3/model-impl/trunk since the previous build Found mavenVersion 3.0.3 from file jar:file:/R1/tools/maven/apache-maven-3.0.3/lib/maven-core-3.0.3.jar!/META-INF/maven/org.apache.maven/maven-core/pom.properties No emails were triggered. Parsing POMs [trunk] $ java -cp /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven3-agent-1.401.jar:/R1/tools/maven/apache-maven-3.0.3/boot/plexus-classworlds-2.4.jar org.jvnet.hudson.maven3.agent.Maven3Main /R1/tools/maven/apache-maven-3.0.3 /R1/resources/webservers/tomcat_2/webapps/jenkins/WEB-INF/lib/remoting-1.401.jar /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven3-interceptor-1.401.jar 53885 <===[HUDSON REMOTING CAPACITY]===> channel started Executing Maven: -B -f <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/pom.xml> deploy [INFO] Scanning for projects... [WARNING] [WARNING] Some problems were encountered while building the effective model for org.cytoscape:model-impl:bundle:3.0.0-alpha3-SNAPSHOT [WARNING] The expression ${pom.version} is deprecated. Please use ${project.version} instead. [WARNING] [WARNING] Some problems were encountered while building the effective model for org.cytoscape:model-impl-it:jar:3.0.0-alpha3-SNAPSHOT [WARNING] 'build.plugins.plugin.version' for org.apache.maven.plugins:maven-surefire-plugin is missing. @ line 43, column 12 [WARNING] 'build.plugins.plugin.version' for org.ops4j.pax.exam:maven-paxexam-plugin is missing. @ line 25, column 12 [WARNING] The expression ${version} is deprecated. Please use ${project.version} instead. [WARNING] [WARNING] It is highly recommended to fix these problems because they threaten the stability of your build. [WARNING] [WARNING] For this reason, future Maven versions might no longer support building such malformed projects. [WARNING] [INFO] ------------------------------------------------------------------------ [INFO] Reactor Build Order: [INFO] [INFO] model-impl-parent [INFO] org.cytoscape.model-impl [INFO] org.cytoscape.model-impl-it [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building model-impl-parent 3.0.0-alpha3-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-javadoc-plugin:2.7:jar (attach-javadocs) @ model-impl-parent --- [INFO] Not executing Javadoc as the project is not a Java classpath-capable package mojo forkStarted org.apache.maven.plugins:maven-source-plugin:2.1.2(attach-sources) mojo forkSucceeded org.apache.maven.plugins:maven-source-plugin:2.1.2(attach-sources) ignoring exception during new ExecutedMojo null [INFO] [INFO] --- maven-source-plugin:2.1.2:jar (attach-sources) @ model-impl-parent --- [INFO] [INFO] --- maven-install-plugin:2.3.1:install (default-install) @ model-impl-parent --- [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/pom.xml> to /home/bturner/.m2/repository/org/cytoscape/model-impl-parent/3.0.0-alpha3-SNAPSHOT/model-impl-parent-3.0.0-alpha3-SNAPSHOT.pom [INFO] [INFO] --- maven-deploy-plugin:2.5:deploy (default-deploy) @ model-impl-parent --- Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/model-impl-parent/3.0.0-alpha3-SNAPSHOT/maven-metadata.xml Downloaded: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/model-impl-parent/3.0.0-alpha3-SNAPSHOT/maven-metadata.xml (625 B at 2.1 KB/sec) Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/model-impl-parent/3.0.0-alpha3-SNAPSHOT/model-impl-parent-3.0.0-alpha3-20110324.001038-143.pom Uploaded: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/model-impl-parent/3.0.0-alpha3-SNAPSHOT/model-impl-parent-3.0.0-alpha3-20110324.001038-143.pom (4 KB at 6.5 KB/sec) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/model-impl-parent/maven-metadata.xml Downloaded: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/model-impl-parent/maven-metadata.xml (387 B at 4.7 KB/sec) Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/model-impl-parent/3.0.0-alpha3-SNAPSHOT/maven-metadata.xml Uploaded: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/model-impl-parent/3.0.0-alpha3-SNAPSHOT/maven-metadata.xml (625 B at 2.2 KB/sec) Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/model-impl-parent/maven-metadata.xml Uploaded: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/model-impl-parent/maven-metadata.xml (387 B at 2.8 KB/sec) projectSucceeded org.cytoscape:model-impl-parent:3.0.0-alpha3-SNAPSHOT [JENKINS] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Model impl/modules/org.cytoscape$model-impl-parent/builds/2011-03-23_20-10-31/archive/org.cytoscape/model-impl-parent/3.0.0-alpha3-SNAPSHOT/pom.xml [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.model-impl 3.0.0-alpha3-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ model-impl --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 3 resources [INFO] [INFO] --- maven-pax-plugin:1.5-SNAPSHOT:compile (default-compile) @ model-impl --- [INFO] Compiling 20 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/impl/target/classes> [INFO] [recovering meta-data] mojoFailed org.ops4j:maven-pax-plugin:1.5-SNAPSHOT(default-compile) projectFailed org.cytoscape:model-impl:3.0.0-alpha3-SNAPSHOT [JENKINS] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/impl/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Model impl/modules/org.cytoscape$model-impl/builds/2011-03-23_20-10-31/archive/org.cytoscape/model-impl/3.0.0-alpha3-SNAPSHOT/pom.xml sessionEnded [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] model-impl-parent ................................. SUCCESS [3.639s] [INFO] org.cytoscape.model-impl .......................... FAILURE [2.096s] [INFO] org.cytoscape.model-impl-it ....................... SKIPPED [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 7.234s [INFO] Finished at: Wed Mar 23 20:10:41 EDT 2011 [INFO] Final Memory: 21M/219M [INFO] ------------------------------------------------------------------------ maven builder waiting mavenExecutionResult exceptions not empty org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.ops4j:maven-pax-plugin:1.5-SNAPSHOT:compile (default-compile) on project model-impl: Compilation failure <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/impl/src/main/java/org/cytoscape/model/internal/CyTableImpl.java>:[264,-1] cannot access org.cytoscape.model.events.AbstractColumnEvent bad class file: org/cytoscape/model/events/AbstractColumnEvent.class(org/cytoscape/model/events:AbstractColumnEvent.class) unable to access file: corrupted zip file at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:213) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59) at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:319) at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156) at org.jvnet.hudson.maven3.launcher.Maven3Launcher.main(Maven3Launcher.java:79) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.codehaus.plexus.classworlds.launcher.Launcher.launchStandard(Launcher.java:329) at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:239) at org.jvnet.hudson.maven3.agent.Maven3Main.launch(Maven3Main.java:146) at hudson.maven.Maven3Builder.call(Maven3Builder.java:124) at hudson.maven.Maven3Builder.call(Maven3Builder.java:71) at hudson.remoting.UserRequest.perform(UserRequest.java:114) at hudson.remoting.UserRequest.perform(UserRequest.java:48) at hudson.remoting.Request$2.run(Request.java:270) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) at java.util.concurrent.FutureTask.run(FutureTask.java:138) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) at java.lang.Thread.run(Thread.java:619) Caused by: org.apache.maven.plugin.CompilationFailureException: Compilation failure <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/impl/src/main/java/org/cytoscape/model/internal/CyTableImpl.java>:[264,-1] cannot access org.cytoscape.model.events.AbstractColumnEvent bad class file: org/cytoscape/model/events/AbstractColumnEvent.class(org/cytoscape/model/events:AbstractColumnEvent.class) unable to access file: corrupted zip file at org.apache.maven.plugin.AbstractCompilerMojo.execute(AbstractCompilerMojo.java:516) at org.apache.maven.plugin.CompilerMojo.execute(CompilerMojo.java:114) at org.ops4j.pax.construct.lifecycle.BundleCompilerMojo.execute(BundleCompilerMojo.java:74) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:101) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:209) ... 27 more Sending e-mails to: [email protected] channel stopped Skipping sonar analysis due to timer build trigger -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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