See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/2146/changes>
Changes: [kono] Version numbers are fixed. ------------------------------------------ [...truncated 32 lines...] A src/test/resources/testData/datatable/table_tab.txt A src/test/resources/testData/sif A src/test/resources/testData/sif/sample.sif A src/test/resources/testData/sif/degenerate.sif A src/test/resources/testData/sif/multiWordProteinsFileTrailingSpaces.sif A src/test/resources/testData/sif/multiWordProteins.sif A src/test/resources/testData/xgmml AU src/test/resources/testData/xgmml/galFiltered.xgmml A src/main A src/main/java A src/main/java/org A src/main/java/org/cytoscape A src/main/java/org/cytoscape/io A src/main/java/org/cytoscape/io/internal A src/main/java/org/cytoscape/io/internal/CyFileFilterImpl.java A src/main/java/org/cytoscape/io/internal/write A src/main/java/org/cytoscape/io/internal/write/gml A src/main/java/org/cytoscape/io/internal/write/gml/GMLWriter.javax A src/main/java/org/cytoscape/io/internal/write/cysession A src/main/java/org/cytoscape/io/internal/write/cysession/CysessionWriterFactoryImpl.java A src/main/java/org/cytoscape/io/internal/write/cysession/CysessionWriterImpl.java A src/main/java/org/cytoscape/io/internal/write/sif AU src/main/java/org/cytoscape/io/internal/write/sif/SifNetworkWriterFactory.java AU src/main/java/org/cytoscape/io/internal/write/sif/SifWriter.java A src/main/java/org/cytoscape/io/internal/write/datatable A src/main/java/org/cytoscape/io/internal/write/datatable/CyAttributesWriter.java.asdf A src/main/java/org/cytoscape/io/internal/write/session A src/main/java/org/cytoscape/io/internal/write/session/SessionWriterImpl.java A src/main/java/org/cytoscape/io/internal/write/session/SessionWriterFactoryImpl.java A src/main/java/org/cytoscape/io/internal/write/xgmml A src/main/java/org/cytoscape/io/internal/write/xgmml/XGMMLWriter.java A src/main/java/org/cytoscape/io/internal/write/xgmml/XGMMLNetworkViewWriterFactory.java A src/main/java/org/cytoscape/io/internal/write/bookmarks A src/main/java/org/cytoscape/io/internal/write/bookmarks/BookmarksWriterFactoryImpl.java A src/main/java/org/cytoscape/io/internal/write/bookmarks/BookmarksWriterImpl.java A src/main/java/org/cytoscape/io/internal/write/properties A src/main/java/org/cytoscape/io/internal/write/properties/PropertiesWriterFactoryImpl.java A src/main/java/org/cytoscape/io/internal/write/properties/PropertiesWriterImpl.java A src/main/java/org/cytoscape/io/internal/write/graphics A src/main/java/org/cytoscape/io/internal/write/graphics/BitmapWriterFactory.java A src/main/java/org/cytoscape/io/internal/write/graphics/PDFExporter.java A src/main/java/org/cytoscape/io/internal/write/graphics/Exporter.java A src/main/java/org/cytoscape/io/internal/write/graphics/SVGExporter.java A src/main/java/org/cytoscape/io/internal/write/graphics/BitmapWriter.java A src/main/java/org/cytoscape/io/internal/write/graphics/PSExporter.java A src/main/java/org/cytoscape/io/internal/write/PresentationWriterManagerImpl.java A src/main/java/org/cytoscape/io/internal/write/AbstractCyNetworkViewWriterFactory.java A src/main/java/org/cytoscape/io/internal/write/CyNetworkViewWriterManagerImpl.java A src/main/java/org/cytoscape/io/internal/write/AbstractWriterManager.java A src/main/java/org/cytoscape/io/internal/write/SessionWriterManagerImpl.java A src/main/java/org/cytoscape/io/internal/write/CyTableWriterManagerImpl.java A src/main/java/org/cytoscape/io/internal/write/AbstractPropertyWriterFactory.java A src/main/java/org/cytoscape/io/internal/write/PropertyWriterManagerImpl.java A src/main/java/org/cytoscape/io/internal/read A src/main/java/org/cytoscape/io/internal/read/cysession A src/main/java/org/cytoscape/io/internal/read/cysession/CysessionReader.java A src/main/java/org/cytoscape/io/internal/read/cysession/CysessionFileFilter.java A src/main/java/org/cytoscape/io/internal/read/cysession/CysessionReaderFactory.java A src/main/java/org/cytoscape/io/internal/read/gml AU src/main/java/org/cytoscape/io/internal/read/gml/GMLNetworkViewReaderFactory.java AU src/main/java/org/cytoscape/io/internal/read/gml/GMLFileFilter.java A src/main/java/org/cytoscape/io/internal/read/gml/KeyValue.java A src/main/java/org/cytoscape/io/internal/read/gml/GMLNetworkViewReader.java A src/main/java/org/cytoscape/io/internal/read/gml/GMLParser.java A src/main/java/org/cytoscape/io/internal/read/datatable A src/main/java/org/cytoscape/io/internal/read/datatable/CyAttributesReader.java.asdf A src/main/java/org/cytoscape/io/internal/read/datatable/TextDataTableReaderFactory.java A src/main/java/org/cytoscape/io/internal/read/datatable/CyAttributesReader.java A src/main/java/org/cytoscape/io/internal/read/datatable/TextDataTableReader.java A src/main/java/org/cytoscape/io/internal/read/datatable/CyAttributesReaderFactory.java A src/main/java/org/cytoscape/io/internal/read/sif A src/main/java/org/cytoscape/io/internal/read/sif/Interaction.java A src/main/java/org/cytoscape/io/internal/read/sif/SIFNetworkViewReaderFactory.java A src/main/java/org/cytoscape/io/internal/read/sif/SIFNetworkViewReader.java A src/main/java/org/cytoscape/io/internal/read/session A src/main/java/org/cytoscape/io/internal/read/session/SessionReaderFactoryImpl.java A src/main/java/org/cytoscape/io/internal/read/session/SessionReaderImpl.java A src/main/java/org/cytoscape/io/internal/read/xgmml A src/main/java/org/cytoscape/io/internal/read/xgmml/XGMMLParser.java A src/main/java/org/cytoscape/io/internal/read/xgmml/XGMMLNetworkViewReaderFactory.java A src/main/java/org/cytoscape/io/internal/read/xgmml/HandlerFactory.java A src/main/java/org/cytoscape/io/internal/read/xgmml/ObjectTypeMap.java A src/main/java/org/cytoscape/io/internal/read/xgmml/ObjectType.java A src/main/java/org/cytoscape/io/internal/read/xgmml/MetadataEntries.java A src/main/java/org/cytoscape/io/internal/read/xgmml/RDFTags.java A src/main/java/org/cytoscape/io/internal/read/xgmml/XGMMLFileFilter.java A src/main/java/org/cytoscape/io/internal/read/xgmml/ParseState.java A src/main/java/org/cytoscape/io/internal/read/xgmml/SAXState.java A src/main/java/org/cytoscape/io/internal/read/xgmml/XGMMLNetworkViewReader.java A src/main/java/org/cytoscape/io/internal/read/xgmml/Handler.java A src/main/java/org/cytoscape/io/internal/read/xgmml/MetadataParser.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDFFormat.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/ReadDataManager.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeGraphics.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/AbstractHandler.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleNode.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeHandleDone.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeAttribute.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleGroup.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDFSource.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleListAttribute.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleGraph.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleGroupNode.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleGroupDone.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleEdge.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleListAttributeDone.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleNodeGraphics.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleGraphDone.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleNodeAttribute.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDFDate.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDF.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeHandleList.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleNetworkAttribute.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDFTitle.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDFType.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDFIdentifier.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDFDescription.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeHandle.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/AttributeValueUtil.java A src/main/java/org/cytoscape/io/internal/read/CopyInputStream.java A src/main/java/org/cytoscape/io/internal/read/bookmarks A src/main/java/org/cytoscape/io/internal/read/bookmarks/BookmarkReaderFactory.java A src/main/java/org/cytoscape/io/internal/read/bookmarks/BookmarkReader.java A src/main/java/org/cytoscape/io/internal/read/bookmarks/BookmarkFileFilter.java A src/main/java/org/cytoscape/io/internal/read/properties A src/main/java/org/cytoscape/io/internal/read/properties/PropertiesReader.java A src/main/java/org/cytoscape/io/internal/read/properties/PropertiesFileFilter.java A src/main/java/org/cytoscape/io/internal/read/properties/PropertiesReaderFactory.java A src/main/java/org/cytoscape/io/internal/read/attrs A src/main/java/org/cytoscape/io/internal/read/CySessionReaderManagerImpl.java A src/main/java/org/cytoscape/io/internal/read/expression A src/main/java/org/cytoscape/io/internal/read/expression/mRNAMeasurement.java A src/main/java/org/cytoscape/io/internal/read/expression/ExpressionData.java A src/main/java/org/cytoscape/io/internal/read/CyPropertyReaderManagerImpl.java A src/main/java/org/cytoscape/io/internal/read/CyNetworkViewReaderManagerImpl.java A src/main/java/org/cytoscape/io/internal/read/CyTableReaderManagerImpl.java A src/main/java/org/cytoscape/io/internal/read/AbstractPropertyReaderFactory.java A src/main/java/org/cytoscape/io/internal/read/AbstractNetworkViewReaderFactory.java A src/main/java/org/cytoscape/io/internal/read/AbstractTableReaderFactory.java A src/main/java/org/cytoscape/io/internal/read/GenericReaderManager.java A src/main/java/org/cytoscape/io/internal/read/VisualStyleBuilder.java A src/main/java/org/cytoscape/io/internal/read/AbstractPropertyReader.java A src/main/java/org/cytoscape/io/internal/read/AbstractNetworkViewReader.java A src/main/java/org/cytoscape/io/internal/read/MarkSupportedInputStream.java A src/main/java/org/cytoscape/io/internal/read/AbstractTableReader.java A src/main/java/org/cytoscape/io/internal/util A src/main/java/org/cytoscape/io/internal/util/StreamUtilImpl.java A src/main/java/org/cytoscape/io/internal/util/ReadUtils.java A src/main/resources A src/main/resources/META-INF A src/main/resources/META-INF/spring A src/main/resources/META-INF/spring/bundle-context-osgi.xml A src/main/resources/META-INF/spring/bundle-context.xml A pom.xml U . At revision 24592 Found mavenVersion 3.0.3 from file jar:file:/R1/tools/maven/apache-maven-3.0.3/lib/maven-core-3.0.3.jar!/META-INF/maven/org.apache.maven/maven-core/pom.properties No emails were triggered. Parsing POMs [trunk] $ java -cp /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven3-agent-1.401.jar:/R1/tools/maven/apache-maven-3.0.3/boot/plexus-classworlds-2.4.jar org.jvnet.hudson.maven3.agent.Maven3Main /R1/tools/maven/apache-maven-3.0.3 /R1/resources/webservers/tomcat_2/webapps/jenkins/WEB-INF/lib/remoting-1.401.jar /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven3-interceptor-1.401.jar 58412 <===[HUDSON REMOTING CAPACITY]===> channel started Executing Maven: -B -f <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/pom.xml> deploy [INFO] Scanning for projects... [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.io-impl [org.cytoscape.io] 3.0.0-alpha2-SNAPSHOT [INFO] ------------------------------------------------------------------------ Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi/org/cytoscape/default-mappings/3.0.0-alpha3-SNAPSHOT/maven-metadata.xml Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/default-mappings/3.0.0-alpha3-SNAPSHOT/maven-metadata.xml Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external/org/cytoscape/default-mappings/3.0.0-alpha3-SNAPSHOT/maven-metadata.xml Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/org/cytoscape/default-mappings/3.0.0-alpha3-SNAPSHOT/maven-metadata.xml Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/default-mappings/3.0.0-alpha3-SNAPSHOT/default-mappings-3.0.0-alpha3-SNAPSHOT.pom Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/org/cytoscape/default-mappings/3.0.0-alpha3-SNAPSHOT/default-mappings-3.0.0-alpha3-SNAPSHOT.pom Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi/org/cytoscape/default-mappings/3.0.0-alpha3-SNAPSHOT/default-mappings-3.0.0-alpha3-SNAPSHOT.pom Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external/org/cytoscape/default-mappings/3.0.0-alpha3-SNAPSHOT/default-mappings-3.0.0-alpha3-SNAPSHOT.pom [WARNING] The POM for org.cytoscape:default-mappings:jar:3.0.0-alpha3-SNAPSHOT is missing, no dependency information available Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/default-mappings/3.0.0-alpha3-SNAPSHOT/default-mappings-3.0.0-alpha3-SNAPSHOT.jar Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/org/cytoscape/default-mappings/3.0.0-alpha3-SNAPSHOT/default-mappings-3.0.0-alpha3-SNAPSHOT.jar Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi/org/cytoscape/default-mappings/3.0.0-alpha3-SNAPSHOT/default-mappings-3.0.0-alpha3-SNAPSHOT.jar Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/spring-osgi-external/org/cytoscape/default-mappings/3.0.0-alpha3-SNAPSHOT/default-mappings-3.0.0-alpha3-SNAPSHOT.jar projectFailed org.cytoscape:io-impl:3.0.0-alpha2-SNAPSHOT [JENKINS] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 IO impl/modules/org.cytoscape$io-impl/builds/2011-03-24_19-01-31/archive/org.cytoscape/io-impl/3.0.0-alpha2-SNAPSHOT/pom.xml sessionEnded [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 5.035s [INFO] Finished at: Thu Mar 24 19:01:39 EDT 2011 [INFO] Final Memory: 16M/153M [INFO] ------------------------------------------------------------------------ maven builder waiting mavenExecutionResult exceptions not empty org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal on project io-impl: Could not resolve dependencies for project org.cytoscape:io-impl:bundle:3.0.0-alpha2-SNAPSHOT: Could not find artifact org.cytoscape:default-mappings:jar:3.0.0-alpha3-SNAPSHOT in cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) at org.apache.maven.lifecycle.internal.LifecycleDependencyResolver.getDependencies(LifecycleDependencyResolver.java:196) at org.apache.maven.lifecycle.internal.LifecycleDependencyResolver.resolveProjectDependencies(LifecycleDependencyResolver.java:108) at org.apache.maven.lifecycle.internal.MojoExecutor.ensureDependenciesAreResolved(MojoExecutor.java:258) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:201) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59) at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:319) at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156) at org.jvnet.hudson.maven3.launcher.Maven3Launcher.main(Maven3Launcher.java:79) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.codehaus.plexus.classworlds.launcher.Launcher.launchStandard(Launcher.java:329) at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:239) at org.jvnet.hudson.maven3.agent.Maven3Main.launch(Maven3Main.java:146) at hudson.maven.Maven3Builder.call(Maven3Builder.java:124) at hudson.maven.Maven3Builder.call(Maven3Builder.java:71) at hudson.remoting.UserRequest.perform(UserRequest.java:114) at hudson.remoting.UserRequest.perform(UserRequest.java:48) at hudson.remoting.Request$2.run(Request.java:270) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) at java.util.concurrent.FutureTask.run(FutureTask.java:138) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) at java.lang.Thread.run(Thread.java:619) Caused by: org.apache.maven.project.DependencyResolutionException: Could not resolve dependencies for project org.cytoscape:io-impl:bundle:3.0.0-alpha2-SNAPSHOT: Could not find artifact org.cytoscape:default-mappings:jar:3.0.0-alpha3-SNAPSHOT in cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) at org.apache.maven.project.DefaultProjectDependenciesResolver.resolve(DefaultProjectDependenciesResolver.java:170) at org.apache.maven.lifecycle.internal.LifecycleDependencyResolver.getDependencies(LifecycleDependencyResolver.java:171) ... 30 more Caused by: org.sonatype.aether.resolution.DependencyResolutionException: Could not find artifact org.cytoscape:default-mappings:jar:3.0.0-alpha3-SNAPSHOT in cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) at org.sonatype.aether.impl.internal.DefaultRepositorySystem.resolveDependencies(DefaultRepositorySystem.java:412) at org.apache.maven.project.DefaultProjectDependenciesResolver.resolve(DefaultProjectDependenciesResolver.java:164) ... 31 more Caused by: org.sonatype.aether.resolution.ArtifactResolutionException: Could not find artifact org.cytoscape:default-mappings:jar:3.0.0-alpha3-SNAPSHOT in cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) at org.sonatype.aether.impl.internal.DefaultArtifactResolver.resolve(DefaultArtifactResolver.java:541) at org.sonatype.aether.impl.internal.DefaultArtifactResolver.resolveArtifacts(DefaultArtifactResolver.java:220) at org.sonatype.aether.impl.internal.DefaultRepositorySystem.resolveDependencies(DefaultRepositorySystem.java:395) ... 32 more Caused by: org.sonatype.aether.transfer.ArtifactNotFoundException: Could not find artifact org.cytoscape:default-mappings:jar:3.0.0-alpha3-SNAPSHOT in cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) at org.sonatype.aether.connector.wagon.WagonRepositoryConnector$4.wrap(WagonRepositoryConnector.java:945) at org.sonatype.aether.connector.wagon.WagonRepositoryConnector$4.wrap(WagonRepositoryConnector.java:940) at org.sonatype.aether.connector.wagon.WagonRepositoryConnector$GetTask.flush(WagonRepositoryConnector.java:695) at org.sonatype.aether.connector.wagon.WagonRepositoryConnector$GetTask.flush(WagonRepositoryConnector.java:689) at org.sonatype.aether.connector.wagon.WagonRepositoryConnector.get(WagonRepositoryConnector.java:445) at org.sonatype.aether.impl.internal.DefaultArtifactResolver.resolve(DefaultArtifactResolver.java:460) ... 34 more Sending e-mails to: [email protected] channel stopped Skipping sonar analysis due to SCM build trigger -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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