See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20PSI-MI%20impl/org.cytoscape$psi-mi-impl/489/changes>
Changes: [mes] added input name argument to all readers ------------------------------------------ <===[HUDSON REMOTING CAPACITY]===> channel started Executing Maven: -B -f <http://cytoscape.wodaklab.org/hudson/job/Cy3%20PSI-MI%20impl/org.cytoscape$psi-mi-impl/ws/pom.xml> deploy [INFO] Scanning for projects... [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.psi-mi-impl [org.cytoscape.psi_mi] 1.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-jaxb2-plugin:0.7.4:generate (mi1) @ psi-mi-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/R1/tools/java/jdk1.6.0_20/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.1]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.7.4:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-raw:jar:0.7.4:compile, org.codehaus.plexus:plexus-utils:jar:1.1:compile, junit:junit:jar:4.8.1:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.6:compile, com.sun.xml.bind:jaxb-impl:jar:2.1.13:compile, javax.xml.bind:jaxb-api:jar:2.1:compile, javax.xml.stream:stax-api:jar:1.0-2:compile, javax.activation:activation:jar:1.1:compile, org.jvnet.jaxb2_commons:jaxb2-basics-jaxb-xjc:jar:2.1.13.MR2:compile, com.sun.codemodel:codemodel:jar:2.3:compile, com.sun.xml.dtd-parser:dtd-parser:jar:1.1:compile, com.sun.istack:istack-commons-tools:jar:2.2.MR1:compile, org.apache.ant:ant:jar:1.7.0:compile, org.apache.ant:ant-launcher:jar:1.7.0:compile, relaxngDatatype:relaxngDatatype:jar:20020414:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.kohsuke.rngom:rngom:jar:20100718:compile, com.sun.xsom:xsom:jar:20100725:compile, sun.jdk:tools:jar:1.5.0:system] [INFO] schemaLanguage:null [INFO] schemaDirectory:<http://cytoscape.wodaklab.org/hudson/job/Cy3%20PSI-MI%20impl/org.cytoscape$psi-mi-impl/ws/src/main/xsd> [INFO] schemaIncludes:[Ljava.lang.String;@b747815 [INFO] schemaExcludes:null [INFO] bindingDirectory:<http://cytoscape.wodaklab.org/hudson/job/Cy3%20PSI-MI%20impl/org.cytoscape$psi-mi-impl/ws/src/main/xsd> [INFO] bindingIncludes:[Ljava.lang.String;@b77b093 [INFO] bindingExcludes:null [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:com.sun.org.apache.xml.internal.resolver.tools.CatalogResolver [INFO] generatePackage:org.cytoscape.psi_mi.internal.schema.mi1 [INFO] generateDirectory:<http://cytoscape.wodaklab.org/hudson/job/Cy3%20PSI-MI%20impl/org.cytoscape$psi-mi-impl/ws/target/generated-sources/xjc> [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:true [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:<http://cytoscape.wodaklab.org/hudson/job/Cy3%20PSI-MI%20impl/org.cytoscape$psi-mi-impl/ws/target/generated-sources/xjc/META-INF/sun-jaxb.episode> [INFO] episode:true [INFO] classpathElements:[<http://cytoscape.wodaklab.org/hudson/job/Cy3%20PSI-MI%20impl/org.cytoscape$psi-mi-impl/ws/target/classes]> [INFO] plugins:null [INFO] episodes:null [INFO] xjcPlugins:null [INFO] episodes:null [INFO] specVersion:2.1 [INFO] schemaFiles (calculated):[<http://cytoscape.wodaklab.org/hudson/job/Cy3%20PSI-MI%20impl/org.cytoscape$psi-mi-impl/ws/src/main/xsd/MIF1.xsd]> [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] The schemaLanguage setting was not defined, assuming 'AUTODETECT'. Cannot find CatalogManager.properties Using java.util.ServiceLoader [INFO] Parsing input schema(s)... [INFO] Compiling input schema(s)... [INFO] Writing output to [<http://cytoscape.wodaklab.org/hudson/job/Cy3%20PSI-MI%20impl/org.cytoscape$psi-mi-impl/ws/target/generated-sources/xjc].> [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/AttributeListType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/AvailabilityType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/BaseLocationType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/BibrefType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/BioSourceType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/CvType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/DbReferenceType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/EntrySet.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/ExperimentType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/FeatureType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/FullNameType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/InteractionElementType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/IntervalType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/LabelType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/NamesType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/ObjectFactory.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/OpenCvType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/PositionType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/ProteinInteractorType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/ProteinParticipantType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/RefType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/XrefType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi1/package-info.java [INFO] Finished execution. [INFO] [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/R1/tools/java/jdk1.6.0_20/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.1]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.7.4:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-raw:jar:0.7.4:compile, org.codehaus.plexus:plexus-utils:jar:1.1:compile, junit:junit:jar:4.8.1:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.6:compile, com.sun.xml.bind:jaxb-impl:jar:2.1.13:compile, javax.xml.bind:jaxb-api:jar:2.1:compile, javax.xml.stream:stax-api:jar:1.0-2:compile, javax.activation:activation:jar:1.1:compile, org.jvnet.jaxb2_commons:jaxb2-basics-jaxb-xjc:jar:2.1.13.MR2:compile, com.sun.codemodel:codemodel:jar:2.3:compile, com.sun.xml.dtd-parser:dtd-parser:jar:1.1:compile, com.sun.istack:istack-commons-tools:jar:2.2.MR1:compile, org.apache.ant:ant:jar:1.7.0:compile, org.apache.ant:ant-launcher:jar:1.7.0:compile, relaxngDatatype:relaxngDatatype:jar:20020414:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.kohsuke.rngom:rngom:jar:20100718:compile, com.sun.xsom:xsom:jar:20100725:compile, sun.jdk:tools:jar:1.5.0:system] [INFO] schemaLanguage:null [INFO] schemaDirectory:<http://cytoscape.wodaklab.org/hudson/job/Cy3%20PSI-MI%20impl/org.cytoscape$psi-mi-impl/ws/src/main/xsd> [INFO] schemaIncludes:[Ljava.lang.String;@2586d9a [INFO] schemaExcludes:null [INFO] bindingDirectory:<http://cytoscape.wodaklab.org/hudson/job/Cy3%20PSI-MI%20impl/org.cytoscape$psi-mi-impl/ws/src/main/xsd> [INFO] bindingIncludes:[Ljava.lang.String;@7b839aa9 [INFO] bindingExcludes:null [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:com.sun.org.apache.xml.internal.resolver.tools.CatalogResolver [INFO] generatePackage:org.cytoscape.psi_mi.internal.schema.mi25 [INFO] generateDirectory:<http://cytoscape.wodaklab.org/hudson/job/Cy3%20PSI-MI%20impl/org.cytoscape$psi-mi-impl/ws/target/generated-sources/xjc> [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:true [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:<http://cytoscape.wodaklab.org/hudson/job/Cy3%20PSI-MI%20impl/org.cytoscape$psi-mi-impl/ws/target/generated-sources/xjc/META-INF/sun-jaxb.episode> [INFO] episode:true [INFO] classpathElements:[<http://cytoscape.wodaklab.org/hudson/job/Cy3%20PSI-MI%20impl/org.cytoscape$psi-mi-impl/ws/target/classes]> [INFO] plugins:null [INFO] episodes:null [INFO] xjcPlugins:null [INFO] episodes:null [INFO] specVersion:2.1 [INFO] schemaFiles (calculated):[<http://cytoscape.wodaklab.org/hudson/job/Cy3%20PSI-MI%20impl/org.cytoscape$psi-mi-impl/ws/src/main/xsd/MIF25.xsd]> [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] The schemaLanguage setting was not defined, assuming 'AUTODETECT'. Using java.util.ServiceLoader [INFO] Parsing input schema(s)... [INFO] --- maven-jaxb2-plugin:0.7.4:generate (mi25) @ psi-mi-impl --- [INFO] Compiling input schema(s)... [INFO] Writing output to [<http://cytoscape.wodaklab.org/hudson/job/Cy3%20PSI-MI%20impl/org.cytoscape$psi-mi-impl/ws/target/generated-sources/xjc].> [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/AttributeListType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/AvailabilityType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/BaseLocationType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/BibrefType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/BioSourceType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/ConfidenceListType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/ConfidenceType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/CvType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/DbReferenceType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/EntrySet.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/ExperimentRefListType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/ExperimentType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/FeatureElementType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/FullNameType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/InteractionElementType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/InteractorElementType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/IntervalType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/LabelType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/NamesType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/ObjectFactory.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/OpenCvType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/ParameterType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/ParticipantType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/PositionType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/XrefType.java [INFO] XJC writing: org/cytoscape/psi_mi/internal/schema/mi25/package-info.java [INFO] Finished execution. [INFO] [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ psi-mi-impl --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 3 resources [INFO] Copying 0 resource [INFO] Copying 1 resource [INFO] Copying 0 resource [INFO] Copying 1 resource [INFO] [INFO] --- maven-pax-plugin:1.5-SNAPSHOT:compile (default-compile) @ psi-mi-impl --- [INFO] Compiling 80 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20PSI-MI%20impl/org.cytoscape$psi-mi-impl/ws/target/classes> [INFO] [recovering meta-data] mojoFailed org.ops4j:maven-pax-plugin:1.5-SNAPSHOT(default-compile) projectFailed org.cytoscape:psi-mi-impl:1.0-SNAPSHOT -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. 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