See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/2117/changes>
Changes: [kono] Changed 2D visual lexicon to to minimal lexicon. ------------------------------------------ [...truncated 60 lines...] A src/test/java/org/cytoscape/task/internal/loadnetwork/AbstractLoadNetworkTaskTester.java A src/test/java/org/cytoscape/task/internal/loadnetwork/LoadNetworkFileTaskTest.java A src/test/java/org/cytoscape/task/internal/quickstart A src/test/java/org/cytoscape/task/internal/quickstart/remote A src/test/java/org/cytoscape/task/internal/quickstart/remote/BioGridPreprocessorTest.java A src/test/java/org/cytoscape/task/internal/setcurren A src/test/java/org/cytoscape/task/internal/setcurren/SetCurrentNetworkTaskFactoryImplTest.java A src/test/java/org/cytoscape/task/internal/setcurren/SetCurrentNetworkTaskTest.java A src/test/resources AU src/test/resources/BIOGRID-ORGANISM-3.1.74.mitab.zip A src/test/resources/node_names.txt A src/test/resources/bad_names.txt A src/test/resources/empty.txt A src/main A src/main/java A src/main/java/org A src/main/java/org/cytoscape A src/main/java/org/cytoscape/task A src/main/java/org/cytoscape/task/internal A src/main/java/org/cytoscape/task/internal/select A src/main/java/org/cytoscape/task/internal/select/SelectUtils.java A src/main/java/org/cytoscape/task/internal/select/SelectAllEdgesTask.java A src/main/java/org/cytoscape/task/internal/select/InvertSelectedEdgesTaskFactory.java A src/main/java/org/cytoscape/task/internal/select/SelectFirstNeighborsTaskFactory.java A src/main/java/org/cytoscape/task/internal/select/SelectAdjacentEdgesTask.java A src/main/java/org/cytoscape/task/internal/select/DeselectAllTask.java A src/main/java/org/cytoscape/task/internal/select/DeselectAllEdgesTaskFactory.java A src/main/java/org/cytoscape/task/internal/select/SelectFirstNeighborsNodeViewTaskFactory.java A src/main/java/org/cytoscape/task/internal/select/SelectConnectedNodesTaskFactory.java A src/main/java/org/cytoscape/task/internal/select/SelectFromFileListTaskFactory.java A src/main/java/org/cytoscape/task/internal/select/InvertSelectedEdgesTask.java A src/main/java/org/cytoscape/task/internal/select/SelectFirstNeighborsTask.java A src/main/java/org/cytoscape/task/internal/select/DeselectAllEdgesTask.java A src/main/java/org/cytoscape/task/internal/select/SelectAllNodesTaskFactory.java A src/main/java/org/cytoscape/task/internal/select/SelectFirstNeighborsNodeViewTask.java A src/main/java/org/cytoscape/task/internal/select/SelectConnectedNodesTask.java A src/main/java/org/cytoscape/task/internal/select/SelectFromFileListTask.java A src/main/java/org/cytoscape/task/internal/select/SelectAllTaskFactory.java A src/main/java/org/cytoscape/task/internal/select/SelectAllNodesTask.java A src/main/java/org/cytoscape/task/internal/select/InvertSelectedNodesTaskFactory.java A src/main/java/org/cytoscape/task/internal/select/DeselectAllNodesTaskFactory.java A src/main/java/org/cytoscape/task/internal/select/AbstractSelectTask.java A src/main/java/org/cytoscape/task/internal/select/SelectAllEdgesTaskFactory.java A src/main/java/org/cytoscape/task/internal/select/SelectAllTask.java A src/main/java/org/cytoscape/task/internal/select/SelectAdjacentEdgesTaskFactory.java A src/main/java/org/cytoscape/task/internal/select/InvertSelectedNodesTask.java A src/main/java/org/cytoscape/task/internal/select/DeselectAllTaskFactory.java A src/main/java/org/cytoscape/task/internal/select/DeselectAllNodesTask.java A src/main/java/org/cytoscape/task/internal/loaddatatable A src/main/java/org/cytoscape/task/internal/loaddatatable/LoadAttributesFileTaskFactoryImpl.java A src/main/java/org/cytoscape/task/internal/loaddatatable/LoadAttributesURLTaskFactoryImpl.java A src/main/java/org/cytoscape/task/internal/loaddatatable/FinalStatusMessageUpdateTask.java A src/main/java/org/cytoscape/task/internal/loaddatatable/LoadAttributesFileTask.java A src/main/java/org/cytoscape/task/internal/loaddatatable/LoadAttributesURLTask.java A src/main/java/org/cytoscape/task/internal/loaddatatable/AbstractLoadAttributesTask.java A src/main/java/org/cytoscape/task/internal/title A src/main/java/org/cytoscape/task/internal/title/EditNetworkTitleTask.java A src/main/java/org/cytoscape/task/internal/title/EditNetworkTitleTaskFactory.java A src/main/java/org/cytoscape/task/internal/session A src/main/java/org/cytoscape/task/internal/session/NewSessionTask.java A src/main/java/org/cytoscape/task/internal/session/OpenSessionTaskFactory.java A src/main/java/org/cytoscape/task/internal/session/SaveSessionAsTaskFactory.java A src/main/java/org/cytoscape/task/internal/session/SaveSessionTask.java A src/main/java/org/cytoscape/task/internal/session/NewSessionTaskFactory.java A src/main/java/org/cytoscape/task/internal/session/OpenSessionTask.java A src/main/java/org/cytoscape/task/internal/session/SaveSessionAsTask.java A src/main/java/org/cytoscape/task/internal/session/SaveSessionTaskFactory.java A src/main/java/org/cytoscape/task/internal/zoom A src/main/java/org/cytoscape/task/internal/zoom/ZoomOutTask.java A src/main/java/org/cytoscape/task/internal/zoom/FitContentTask.java A src/main/java/org/cytoscape/task/internal/zoom/FitSelectedTaskFactory.java A src/main/java/org/cytoscape/task/internal/zoom/ZoomInTaskFactory.java A src/main/java/org/cytoscape/task/internal/zoom/ZoomOutTaskFactory.java A src/main/java/org/cytoscape/task/internal/zoom/FitContentTaskFactory.java A src/main/java/org/cytoscape/task/internal/zoom/AbstractZoomTask.java A src/main/java/org/cytoscape/task/internal/zoom/FitSelectedTask.java A src/main/java/org/cytoscape/task/internal/zoom/ZoomInTask.java A src/main/java/org/cytoscape/task/internal/table A src/main/java/org/cytoscape/task/internal/table/RenameColumnTaskFactory.java A src/main/java/org/cytoscape/task/internal/table/CopyValueToEntireColumnTask.java A src/main/java/org/cytoscape/task/internal/table/DeleteColumnTask.java A src/main/java/org/cytoscape/task/internal/table/AbstractTableColumnTaskFactory.java A src/main/java/org/cytoscape/task/internal/table/DeleteTableTaskFactory.java A src/main/java/org/cytoscape/task/internal/table/AbstractTableCellTaskFactory.java A src/main/java/org/cytoscape/task/internal/table/RenameColumnTask.java A src/main/java/org/cytoscape/task/internal/table/CopyValueToEntireColumnTaskFactory.java A src/main/java/org/cytoscape/task/internal/table/DeleteColumnTaskFactory.java A src/main/java/org/cytoscape/task/internal/table/DeleteTableTask.java A src/main/java/org/cytoscape/task/internal/loadnetwork A src/main/java/org/cytoscape/task/internal/loadnetwork/LoadNetworkURLTask.java A src/main/java/org/cytoscape/task/internal/loadnetwork/AbstractLoadNetworkTask.java A src/main/java/org/cytoscape/task/internal/loadnetwork/LoadNetworkFileTaskFactoryImpl.java A src/main/java/org/cytoscape/task/internal/loadnetwork/LoadNetworkURLTaskFactoryImpl.java A src/main/java/org/cytoscape/task/internal/loadnetwork/LoadNetworkFileTask.java A src/main/java/org/cytoscape/task/internal/quickstart A src/main/java/org/cytoscape/task/internal/quickstart/SelectTableMappingKeyTask.java A src/main/java/org/cytoscape/task/internal/quickstart/ImportNetworkFromPublicDataSetTask.java A src/main/java/org/cytoscape/task/internal/quickstart/FileImportTableTask.java A src/main/java/org/cytoscape/task/internal/quickstart/QuickStartTaskFactory.java A src/main/java/org/cytoscape/task/internal/quickstart/SetTableNameTask.java A src/main/java/org/cytoscape/task/internal/quickstart/SelectMappingKeyTypeTask.java A src/main/java/org/cytoscape/task/internal/quickstart/SetNetworkNameTask.java A src/main/java/org/cytoscape/task/internal/quickstart/LoadTableTask.java A src/main/java/org/cytoscape/task/internal/quickstart/ImportTaskUtil.java A src/main/java/org/cytoscape/task/internal/quickstart/QuickStartState.java A src/main/java/org/cytoscape/task/internal/quickstart/remote A src/main/java/org/cytoscape/task/internal/quickstart/remote/BioGridPreprocessor.java A src/main/java/org/cytoscape/task/internal/quickstart/remote/InteractionFilePreprocessor.java A src/main/java/org/cytoscape/task/internal/quickstart/remote/PsiMiToSif.java A src/main/java/org/cytoscape/task/internal/quickstart/LoadNetworkTask.java A src/main/java/org/cytoscape/task/internal/quickstart/MergeDataTask.java A src/main/java/org/cytoscape/task/internal/quickstart/QuickStartTask.java A src/main/java/org/cytoscape/task/internal/quickstart/IDType.java A src/main/java/org/cytoscape/task/internal/exportnetwork A src/main/java/org/cytoscape/task/internal/exportnetwork/ExportNetworkViewTaskFactory.java A src/main/java/org/cytoscape/task/internal/setcurrent A src/main/java/org/cytoscape/task/internal/setcurrent/SetCurrentNetworkTaskFactoryImpl.java A src/main/java/org/cytoscape/task/internal/setcurrent/SetCurrentNetworkTask.java A src/main/java/org/cytoscape/task/internal/proxysettings A src/main/java/org/cytoscape/task/internal/proxysettings/ProxySettingsTask.java A src/main/java/org/cytoscape/task/internal/proxysettings/ProxySettingsTaskFactory.java A src/main/java/org/cytoscape/task/internal/exportgraphics A src/main/java/org/cytoscape/task/internal/exportgraphics/ExportNetworkImageTaskFactory.java A src/main/java/org/cytoscape/task/internal/tests A src/main/java/org/cytoscape/task/internal/networkobjects A src/main/java/org/cytoscape/task/internal/networkobjects/DeleteSelectedNodesAndEdgesTask.java A src/main/java/org/cytoscape/task/internal/networkobjects/DeleteEdit.java A src/main/java/org/cytoscape/task/internal/networkobjects/DeleteSelectedNodesAndEdgesTaskFactory.java A src/main/java/org/cytoscape/task/internal/destruction A src/main/java/org/cytoscape/task/internal/destruction/DestroyNetworkViewTask.java A src/main/java/org/cytoscape/task/internal/destruction/DestroyNetworkTask.java A src/main/java/org/cytoscape/task/internal/destruction/DestroyNetworkViewTaskFactory.java A src/main/java/org/cytoscape/task/internal/destruction/DestroyNetworkTaskFactory.java A src/main/java/org/cytoscape/task/internal/creation A src/main/java/org/cytoscape/task/internal/creation/NewNetworkSelectedNodesEdgesTask.java A src/main/java/org/cytoscape/task/internal/creation/NewNetworkSelectedNodesOnlyTaskFactory.java A src/main/java/org/cytoscape/task/internal/creation/CreateNetworkViewTaskFactory.java A src/main/java/org/cytoscape/task/internal/creation/CloneNetworkTaskFactory.java A src/main/java/org/cytoscape/task/internal/creation/NewEmptyNetworkTask.java A src/main/java/org/cytoscape/task/internal/creation/NewNetworkSelectedNodesEdgesTaskFactory.java A src/main/java/org/cytoscape/task/internal/creation/AbstractNetworkFromSelectionTask.java A src/main/java/org/cytoscape/task/internal/creation/NewNetworkSelectedNodesOnlyTask.java A src/main/java/org/cytoscape/task/internal/creation/AbstractCreationTask.java A src/main/java/org/cytoscape/task/internal/creation/CreateNetworkViewTask.java A src/main/java/org/cytoscape/task/internal/creation/CloneNetworkTask.java A src/main/java/org/cytoscape/task/internal/creation/NewEmptyNetworkTaskFactory.java A src/main/java/org/cytoscape/task/internal/io A src/main/java/org/cytoscape/task/internal/io/CyTableWriter.java A src/main/java/org/cytoscape/task/internal/io/ViewWriter.java A src/main/java/org/cytoscape/task/internal/io/AbstractCyWriter.java A src/main/java/org/cytoscape/task/internal/io/CyNetworkViewWriter.java A src/main/java/org/cytoscape/task/internal/hide A src/main/java/org/cytoscape/task/internal/hide/UnHideAllEdgesTask.java A src/main/java/org/cytoscape/task/internal/hide/UnHideAllTaskFactory.java A src/main/java/org/cytoscape/task/internal/hide/UnHideAllNodesTask.java A src/main/java/org/cytoscape/task/internal/hide/HideSelectedEdgesTaskFactory.java A src/main/java/org/cytoscape/task/internal/hide/HideSelectedTask.java A src/main/java/org/cytoscape/task/internal/hide/HideSelectedNodesTaskFactory.java A src/main/java/org/cytoscape/task/internal/hide/UnHideAllEdgesTaskFactory.java A src/main/java/org/cytoscape/task/internal/hide/UnHideAllTask.java A src/main/java/org/cytoscape/task/internal/hide/UnHideAllNodesTaskFactory.java A src/main/java/org/cytoscape/task/internal/hide/HideUtils.java A src/main/java/org/cytoscape/task/internal/hide/HideSelectedEdgesTask.java A src/main/java/org/cytoscape/task/internal/hide/HideSelectedTaskFactory.java A src/main/java/org/cytoscape/task/internal/hide/HideSelectedNodesTask.java A src/main/java/org/cytoscape/task/internal/layout A src/main/java/org/cytoscape/task/internal/layout/ApplyPreferredLayoutTask.java A src/main/java/org/cytoscape/task/internal/layout/ApplyPreferredLayoutTaskFactory.java A src/main/resources A src/main/resources/META-INF A src/main/resources/META-INF/spring A src/main/resources/META-INF/spring/bundle-context-osgi.xml A src/main/resources/META-INF/spring/bundle-context.xml A pom.xml U . At revision 24636 WARNING: clock of the subversion server appears to be out of sync. This can result in inconsistent check out behavior. Found mavenVersion 3.0.3 from file jar:file:/R1/tools/maven/apache-maven-3.0.3/lib/maven-core-3.0.3.jar!/META-INF/maven/org.apache.maven/maven-core/pom.properties No emails were triggered. Parsing POMs [trunk] $ java -cp /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven3-agent-1.401.jar:/R1/tools/maven/apache-maven-3.0.3/boot/plexus-classworlds-2.4.jar org.jvnet.hudson.maven3.agent.Maven3Main /R1/tools/maven/apache-maven-3.0.3 /R1/resources/webservers/tomcat_2/webapps/jenkins/WEB-INF/lib/remoting-1.401.jar /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven3-interceptor-1.401.jar 59053 <===[HUDSON REMOTING CAPACITY]===> channel started Executing Maven: -B -f <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/pom.xml> deploy [INFO] Scanning for projects... [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.core-task-impl 3.0.0-alpha2-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ core-task-impl --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] Copying 0 resource [INFO] [INFO] --- maven-pax-plugin:1.5-SNAPSHOT:compile (default-compile) @ core-task-impl --- [INFO] Compiling 129 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/target/classes> [INFO] [recovering meta-data] mojoFailed org.ops4j:maven-pax-plugin:1.5-SNAPSHOT(default-compile) projectFailed org.cytoscape:core-task-impl:3.0.0-alpha2-SNAPSHOT [JENKINS] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Core%20Task%20Implementation/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Core Task Implementation/modules/org.cytoscape$core-task-impl/builds/2011-03-30_22-17-07/archive/org.cytoscape/core-task-impl/3.0.0-alpha2-SNAPSHOT/pom.xml sessionEnded [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 4.022s [INFO] Finished at: Wed Mar 30 22:17:14 EDT 2011 [INFO] Final Memory: 22M/221M [INFO] ------------------------------------------------------------------------ mavenExecutionResult exceptions not empty org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.ops4j:maven-pax-plugin:1.5-SNAPSHOT:compile (default-compile) on project core-task-impl: Compilation failure at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:213) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59) at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:319) at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156) at org.jvnet.hudson.maven3.launcher.Maven3Launcher.main(Maven3Launcher.java:79) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.codehaus.plexus.classworlds.launcher.Launcher.launchStandard(Launcher.java:329) at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:239) at org.jvnet.hudson.maven3.agent.Maven3Main.launch(Maven3Main.java:146) at hudson.maven.Maven3Builder.call(Maven3Builder.java:124) at hudson.maven.Maven3Builder.call(Maven3Builder.java:71) at hudson.remoting.UserRequest.perform(UserRequest.java:114) at hudson.remoting.UserRequest.perform(UserRequest.java:48) at hudson.remoting.Request$2.run(Request.java:270) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) at java.util.concurrent.FutureTask.run(FutureTask.java:138) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) at java.lang.Thread.run(Thread.java:619) Caused by: org.apache.maven.plugin.CompilationFailureException: Compilation failure at org.apache.maven.plugin.AbstractCompilerMojo.execute(AbstractCompilerMojo.java:516) at org.apache.maven.plugin.CompilerMojo.execute(CompilerMojo.java:114) at org.ops4j.pax.construct.lifecycle.BundleCompilerMojo.execute(BundleCompilerMojo.java:74) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:101) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:209) ... 27 more Sending e-mails to: [email protected] channel stopped Skipping sonar analysis due to snapshot dependency build trigger -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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