Author: scooter
Date: 2011-04-10 13:16:00 -0700 (Sun, 10 Apr 2011)
New Revision: 24736
Added:
csplugins/trunk/ucsf/scooter/clusterMaker/Release_notes-1.9
Log:
Added: csplugins/trunk/ucsf/scooter/clusterMaker/Release_notes-1.9
===================================================================
--- csplugins/trunk/ucsf/scooter/clusterMaker/Release_notes-1.9
(rev 0)
+++ csplugins/trunk/ucsf/scooter/clusterMaker/Release_notes-1.9 2011-04-10
20:16:00 UTC (rev 24736)
@@ -0,0 +1,29 @@
+clusterMaker 1.9 Release
+
+The RBVI is happy to announce the release of clusterMaker 1.9. This is a
significant
+enhancement over clusterMaker 1.6 and includes new algorithms, improvements to
older
+algorithms, new visualizations, and a full CyCommand interface so other
plugins can
+take advantage of clusterMaker's visualizations and algorithms.
+
+New algorithms:
+ AutoSOME
+ Affinity Propagation
+ Connected Components
+ Community Clustering (GLay)
+ MCODE
+ Spectral Clustering of Protein Sequences (SCPS)
+ Transitivity Clustering
+
+Major changes
+ MCL has been parallelized
+ Added ability to create Nested Networks from an attribute
+ Added ability to create new networks from an attribute with the option
to restore inter-cluster edges
+ Added full CyCommands interface
+
+Minor changes
+ Added "Link networks" command to link selection across networks
+ Several enhancements to HeatMaps, including improved PDF output
+ Added link to NodeCharts plugin (if installed) that provides heatstrips
on the nodes
+
+Updated documentation at:
http://www.cgl.ucsf.edu/cytoscape/cluster/clusterMaker.html
+
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