Author: kono
Date: 2011-04-11 13:22:31 -0700 (Mon, 11 Apr 2011)
New Revision: 24741
Modified:
core3/swing-application-impl/trunk/src/main/java/org/cytoscape/internal/view/NetworkPanel.java
Log:
Changed updateUI to repaint.
Modified:
core3/swing-application-impl/trunk/src/main/java/org/cytoscape/internal/view/NetworkPanel.java
===================================================================
---
core3/swing-application-impl/trunk/src/main/java/org/cytoscape/internal/view/NetworkPanel.java
2011-04-11 19:49:40 UTC (rev 24740)
+++
core3/swing-application-impl/trunk/src/main/java/org/cytoscape/internal/view/NetworkPanel.java
2011-04-11 20:22:31 UTC (rev 24741)
@@ -29,7 +29,6 @@
*/
package org.cytoscape.internal.view;
-
import java.awt.BorderLayout;
import java.awt.Color;
import java.awt.Component;
@@ -42,7 +41,6 @@
import java.util.LinkedList;
import java.util.List;
import java.util.Map;
-import java.util.Properties;
import javax.swing.InputMap;
import javax.swing.JMenuItem;
@@ -62,25 +60,23 @@
import javax.swing.tree.TreePath;
import org.cytoscape.application.swing.CyAction;
-import org.cytoscape.model.CyColumn;
-import org.cytoscape.model.CyTable;
-import org.cytoscape.model.CyTableRowUpdateService;
-import org.cytoscape.model.CyTableUtil;
+import org.cytoscape.event.CyEventHelper;
+import org.cytoscape.internal.task.NetworkCollectionTaskFactoryTunableAction;
+import org.cytoscape.internal.task.NetworkTaskFactoryTunableAction;
+import
org.cytoscape.internal.task.NetworkViewCollectionTaskFactoryTunableAction;
+import org.cytoscape.internal.task.NetworkViewTaskFactoryTunableAction;
+import org.cytoscape.internal.task.TaskFactoryTunableAction;
import org.cytoscape.model.CyNetwork;
import org.cytoscape.model.CyNetworkManager;
import org.cytoscape.model.CyRow;
-import org.cytoscape.event.CyEventHelper;
+import org.cytoscape.model.CyTable;
+import org.cytoscape.model.CyTableRowUpdateService;
+import org.cytoscape.model.CyTableUtil;
import org.cytoscape.model.events.CyTableRowUpdateMicroListener;
import org.cytoscape.model.events.NetworkAboutToBeDestroyedEvent;
import org.cytoscape.model.events.NetworkAboutToBeDestroyedListener;
import org.cytoscape.model.events.NetworkAddedEvent;
import org.cytoscape.model.events.NetworkAddedListener;
-import org.cytoscape.view.model.CyNetworkViewManager;
-import org.cytoscape.view.model.CyNetworkView;
-import org.cytoscape.view.model.events.NetworkViewAboutToBeDestroyedEvent;
-import org.cytoscape.view.model.events.NetworkViewAboutToBeDestroyedListener;
-import org.cytoscape.view.model.events.NetworkViewAddedEvent;
-import org.cytoscape.view.model.events.NetworkViewAddedListener;
import org.cytoscape.model.events.RowSetMicroListener;
import org.cytoscape.session.CyApplicationManager;
import org.cytoscape.session.events.SetCurrentNetworkEvent;
@@ -94,677 +90,635 @@
import org.cytoscape.util.swing.AbstractTreeTableModel;
import org.cytoscape.util.swing.JTreeTable;
import org.cytoscape.util.swing.TreeTableModel;
+import org.cytoscape.view.model.CyNetworkView;
+import org.cytoscape.view.model.CyNetworkViewManager;
+import org.cytoscape.view.model.events.NetworkViewAboutToBeDestroyedEvent;
+import org.cytoscape.view.model.events.NetworkViewAboutToBeDestroyedListener;
+import org.cytoscape.view.model.events.NetworkViewAddedEvent;
+import org.cytoscape.view.model.events.NetworkViewAddedListener;
import org.cytoscape.work.TaskFactory;
import org.cytoscape.work.TaskManager;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
-import org.cytoscape.internal.task.NetworkCollectionTaskFactoryTunableAction;
-import org.cytoscape.internal.task.NetworkTaskFactoryTunableAction;
-import
org.cytoscape.internal.task.NetworkViewCollectionTaskFactoryTunableAction;
-import org.cytoscape.internal.task.NetworkViewTaskFactoryTunableAction;
-import org.cytoscape.internal.task.TaskFactoryTunableAction;
+public class NetworkPanel extends JPanel implements TreeSelectionListener,
SetCurrentNetworkViewListener,
+ CyTableRowUpdateMicroListener, SetCurrentNetworkListener,
NetworkAddedListener, NetworkViewAddedListener,
+ NetworkAboutToBeDestroyedListener,
NetworkViewAboutToBeDestroyedListener {
+
+ private final static long serialVersionUID = 1213748836763243L;
+ private static final Logger logger =
LoggerFactory.getLogger(NetworkPanel.class);
-public class NetworkPanel extends JPanel implements TreeSelectionListener,
- SetCurrentNetworkViewListener, CyTableRowUpdateMicroListener,
- SetCurrentNetworkListener, NetworkAddedListener,
- NetworkViewAddedListener, NetworkAboutToBeDestroyedListener,
- NetworkViewAboutToBeDestroyedListener
-{
- private final static long serialVersionUID = 1213748836763243L;
+ private final JTreeTable treeTable;
+ private final NetworkTreeNode root;
+ private JPanel navigatorPanel;
+ private JPopupMenu popup;
+ private JSplitPane split;
+ private final NetworkTreeTableModel treeTableModel;
+ private final CyApplicationManager applicationManager;
+ private final CyNetworkManager netmgr;
+ private final CyNetworkViewManager networkViewManager;
+ private Long currentNetId;
+ private final TaskManager taskManager;
+ private Map<TaskFactory, JMenuItem> popupMap;
+ private Map<TaskFactory, CyAction> popupActions;
+ private CyEventHelper eventHelper;
+ private Map<CyNetwork, RowSetMicroListener> nameListeners;
+ private CyTableRowUpdateService tableRowUpdateService;
- private static final Logger logger =
LoggerFactory.getLogger(NetworkPanel.class);
-
- private final JTreeTable treeTable;
- private final NetworkTreeNode root;
- private JPanel navigatorPanel;
- private JPopupMenu popup;
- private JSplitPane split;
- private final NetworkTreeTableModel treeTableModel;
- private final CyApplicationManager applicationManager;
- private final CyNetworkManager netmgr;
- private final CyNetworkViewManager networkViewManager;
- private Long currentNetId;
- private final TaskManager taskManager;
- private Map<TaskFactory,JMenuItem> popupMap;
- private Map<TaskFactory,CyAction> popupActions;
- private CyEventHelper eventHelper;
- private Map<CyNetwork, RowSetMicroListener> nameListeners;
- private CyTableRowUpdateService tableRowUpdateService;
+ /**
+ * Constructor for the Network Panel.
+ *
+ * @param desktop
+ */
+ public NetworkPanel(final CyApplicationManager applicationManager, final
CyNetworkManager netmgr,
+ final CyNetworkViewManager networkViewManager, final
BirdsEyeViewHandler bird,
+ final TaskManager taskManager, final CyEventHelper eventHelper,
+ final CyTableRowUpdateService tableRowUpdateService) {
+ super();
- /**
- * Constructor for the Network Panel.
- *
- * @param desktop
+ this.applicationManager = applicationManager;
+ this.netmgr = netmgr;
+ this.networkViewManager = networkViewManager;
+ this.taskManager = taskManager;
+ this.eventHelper = eventHelper;
+ this.tableRowUpdateService = tableRowUpdateService;
+
+ root = new NetworkTreeNode("Network Root", 0L);
+ treeTableModel = new NetworkTreeTableModel(root);
+ treeTable = new JTreeTable(treeTableModel);
+ initialize();
+ setNavigator(bird.getBirdsEyeView());
+ currentNetId = null;
+ nameListeners = new HashMap<CyNetwork, RowSetMicroListener>();
+
+ /*
+ * Remove CTR-A for enabling select all function in the main window.
*/
- public NetworkPanel(final CyApplicationManager applicationManager,
final CyNetworkManager netmgr,
- final CyNetworkViewManager networkViewManager,
- final BirdsEyeViewHandler bird, final TaskManager
taskManager,
- final CyEventHelper eventHelper,
- final CyTableRowUpdateService tableRowUpdateService)
- {
- super();
+ for (KeyStroke listener : treeTable.getRegisteredKeyStrokes()) {
+ if (listener.toString().equals("ctrl pressed A")) {
+ final InputMap map = treeTable.getInputMap();
+ map.remove(listener);
+ treeTable.setInputMap(WHEN_FOCUSED, map);
+ treeTable.setInputMap(WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, map);
+ }
+ }
+ }
- this.applicationManager = applicationManager;
- this.netmgr = netmgr;
- this.networkViewManager = networkViewManager;
- this.taskManager = taskManager;
- this.eventHelper = eventHelper;
- this.tableRowUpdateService = tableRowUpdateService;
+ protected void initialize() {
+ setLayout(new BorderLayout());
+ setPreferredSize(new Dimension(300, 700));
- root = new NetworkTreeNode("Network Root", 0L);
- treeTableModel = new NetworkTreeTableModel(root);
- treeTable = new JTreeTable(treeTableModel);
- initialize();
- setNavigator(bird.getBirdsEyeView());
- currentNetId = null;
- nameListeners = new HashMap<CyNetwork,RowSetMicroListener>();
+ treeTable.getTree().addTreeSelectionListener(this);
+ treeTable.getTree().setRootVisible(false);
- /*
- * Remove CTR-A for enabling select all function in the main
window.
- */
- for (KeyStroke listener : treeTable.getRegisteredKeyStrokes()) {
- if (listener.toString().equals("ctrl pressed A")) {
- final InputMap map = treeTable.getInputMap();
- map.remove(listener);
- treeTable.setInputMap(WHEN_FOCUSED, map);
-
treeTable.setInputMap(WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, map);
- }
- }
- }
+ ToolTipManager.sharedInstance().registerComponent(treeTable);
- protected void initialize() {
- setLayout(new BorderLayout());
- setPreferredSize(new Dimension(300, 700));
+ treeTable.getTree().setCellRenderer(new TreeCellRenderer());
- treeTable.getTree().addTreeSelectionListener(this);
- treeTable.getTree().setRootVisible(false);
+ treeTable.getColumn("Network").setPreferredWidth(100);
+ treeTable.getColumn("Nodes").setPreferredWidth(45);
+ treeTable.getColumn("Edges").setPreferredWidth(45);
- ToolTipManager.sharedInstance().registerComponent(treeTable);
+ navigatorPanel = new JPanel();
+ navigatorPanel.setLayout(new BorderLayout());
+ navigatorPanel.setPreferredSize(new Dimension(280, 280));
+ navigatorPanel.setSize(new Dimension(280, 280));
+ navigatorPanel.setBackground(Color.white);
- treeTable.getTree().setCellRenderer(new TreeCellRenderer());
+ JScrollPane scroll = new JScrollPane(treeTable);
- treeTable.getColumn("Network").setPreferredWidth(100);
- treeTable.getColumn("Nodes").setPreferredWidth(45);
- treeTable.getColumn("Edges").setPreferredWidth(45);
+ split = new JSplitPane(JSplitPane.VERTICAL_SPLIT, scroll,
navigatorPanel);
+ split.setResizeWeight(1);
+ split.setDividerLocation(300);
- navigatorPanel = new JPanel();
- navigatorPanel.setLayout(new BorderLayout());
- navigatorPanel.setPreferredSize(new Dimension(280, 280));
- navigatorPanel.setSize(new Dimension(280, 280));
- navigatorPanel.setBackground(Color.white);
+ add(split);
- JScrollPane scroll = new JScrollPane(treeTable);
+ // this mouse listener listens for the right-click event and will show
+ // the pop-up window when that occurrs
+ treeTable.addMouseListener(new PopupListener());
- split = new JSplitPane(JSplitPane.VERTICAL_SPLIT, scroll,
- navigatorPanel);
- split.setResizeWeight(1);
- split.setDividerLocation(300);
+ // create and populate the popup window
+ popup = new JPopupMenu();
+ popupMap = new HashMap<TaskFactory, JMenuItem>();
+ popupActions = new HashMap<TaskFactory, CyAction>();
+ }
- add(split);
+ private void addFactory(TaskFactory factory, CyAction action) {
+ JMenuItem item = new JMenuItem(action);
+ popupMap.put(factory, item);
+ popupActions.put(factory, action);
+ popup.add(item);
+ popup.addPopupMenuListener(action);
+ }
- // this mouse listener listens for the right-click event and
will show
- // the pop-up window when that occurrs
- treeTable.addMouseListener(new PopupListener());
+ private void removeFactory(TaskFactory factory) {
+ JMenuItem item = popupMap.remove(factory);
+ if (item != null)
+ popup.remove(item);
+ CyAction action = popupActions.remove(factory);
+ if (action != null)
+ popup.removePopupMenuListener(action);
+ }
- // create and populate the popup window
- popup = new JPopupMenu();
- popupMap = new HashMap<TaskFactory,JMenuItem>();
- popupActions = new HashMap<TaskFactory,CyAction>();
- }
+ public void addTaskFactory(TaskFactory factory, Map props) {
+ addFactory(factory, new TaskFactoryTunableAction(taskManager, factory,
props, applicationManager));
+ }
- private void addFactory(TaskFactory factory, CyAction action) {
- JMenuItem item = new JMenuItem( action );
- popupMap.put(factory,item);
- popupActions.put(factory,action);
- popup.add(item);
- popup.addPopupMenuListener(action);
- }
+ public void removeTaskFactory(TaskFactory factory, Map props) {
+ removeFactory(factory);
+ }
- private void removeFactory(TaskFactory factory) {
- JMenuItem item = popupMap.remove(factory);
- if ( item != null )
- popup.remove(item);
- CyAction action = popupActions.remove(factory);
- if ( action != null )
- popup.removePopupMenuListener(action);
- }
+ public void addNetworkCollectionTaskFactory(NetworkCollectionTaskFactory
factory, Map props) {
+ addFactory(factory, new
NetworkCollectionTaskFactoryTunableAction(taskManager, factory, props,
+ applicationManager));
+ }
- public void addTaskFactory(TaskFactory factory, Map props) {
- addFactory(factory, new TaskFactoryTunableAction(taskManager,
factory, props, applicationManager));
- }
+ public void
removeNetworkCollectionTaskFactory(NetworkCollectionTaskFactory factory, Map
props) {
+ removeFactory(factory);
+ }
- public void removeTaskFactory(TaskFactory factory, Map props) {
- removeFactory(factory);
- }
+ public void
addNetworkViewCollectionTaskFactory(NetworkViewCollectionTaskFactory factory,
Map props) {
+ addFactory(factory, new
NetworkViewCollectionTaskFactoryTunableAction(taskManager, factory, props,
+ applicationManager));
+ }
- public void
addNetworkCollectionTaskFactory(NetworkCollectionTaskFactory factory, Map
props) {
- addFactory(factory,new
NetworkCollectionTaskFactoryTunableAction(taskManager, factory, props,
applicationManager));
- }
+ public void
removeNetworkViewCollectionTaskFactory(NetworkViewCollectionTaskFactory
factory, Map props) {
+ removeFactory(factory);
+ }
- public void
removeNetworkCollectionTaskFactory(NetworkCollectionTaskFactory factory, Map
props) {
- removeFactory(factory);
- }
+ public void addNetworkTaskFactory(NetworkTaskFactory factory, Map props) {
+ addFactory(factory, new NetworkTaskFactoryTunableAction(taskManager,
factory, props, applicationManager));
+ }
+ public void removeNetworkTaskFactory(NetworkTaskFactory factory, Map
props) {
+ removeFactory(factory);
+ }
- public void
addNetworkViewCollectionTaskFactory(NetworkViewCollectionTaskFactory factory,
Map props) {
- addFactory(factory, new
NetworkViewCollectionTaskFactoryTunableAction(taskManager, factory, props,
applicationManager));
- }
+ public void addNetworkViewTaskFactory(NetworkViewTaskFactory factory, Map
props) {
+ addFactory(factory, new
NetworkViewTaskFactoryTunableAction(taskManager, factory, props,
applicationManager));
+ }
- public void
removeNetworkViewCollectionTaskFactory(NetworkViewCollectionTaskFactory
factory, Map props) {
- removeFactory(factory);
- }
+ public void removeNetworkViewTaskFactory(NetworkViewTaskFactory factory,
Map props) {
+ removeFactory(factory);
+ }
- public void addNetworkTaskFactory(NetworkTaskFactory factory, Map
props) {
- addFactory(factory, new
NetworkTaskFactoryTunableAction(taskManager, factory, props,
applicationManager));
- }
+ /**
+ * DOCUMENT ME!
+ *
+ * @param comp
+ * DOCUMENT ME!
+ */
+ public void setNavigator(final Component comp) {
+ this.navigatorPanel.removeAll();
+ this.navigatorPanel.add(comp, BorderLayout.CENTER);
+ }
- public void removeNetworkTaskFactory(NetworkTaskFactory factory, Map
props) {
- removeFactory(factory);
- }
+ /**
+ * This is used by Session writer.
+ *
+ * @return
+ */
+ public JTreeTable getTreeTable() {
+ return treeTable;
+ }
- public void addNetworkViewTaskFactory(NetworkViewTaskFactory factory,
Map props) {
- addFactory(factory, new
NetworkViewTaskFactoryTunableAction(taskManager, factory, props,
applicationManager));
- }
+ /**
+ * DOCUMENT ME!
+ *
+ * @return DOCUMENT ME!
+ */
+ public JPanel getNavigatorPanel() {
+ return navigatorPanel;
+ }
- public void removeNetworkViewTaskFactory(NetworkViewTaskFactory
factory, Map props) {
- removeFactory(factory);
- }
-
- /**
- * DOCUMENT ME!
- *
- * @param comp
- * DOCUMENT ME!
- */
- public void setNavigator(final Component comp) {
- this.navigatorPanel.removeAll();
- this.navigatorPanel.add(comp, BorderLayout.CENTER);
- }
+ /**
+ * Remove a network from the panel.
+ *
+ * @param network_id
+ */
+ public void removeNetwork(final Long network_id) {
+ final CyNetwork network = netmgr.getNetwork(network_id);
+ tableRowUpdateService.stopTracking(this, network.getDefaultNodeTable());
+ tableRowUpdateService.stopTracking(this, network.getDefaultEdgeTable());
- /**
- * This is used by Session writer.
- *
- * @return
- */
- public JTreeTable getTreeTable() {
- return treeTable;
+ final NetworkTreeNode node = getNetworkNode(network_id);
+ final Enumeration children = node.children();
+ final List<NetworkTreeNode> removed_children = new
ArrayList<NetworkTreeNode>();
+
+ while (children.hasMoreElements()) {
+ removed_children.add((NetworkTreeNode) children.nextElement());
}
- /**
- * DOCUMENT ME!
- *
- * @return DOCUMENT ME!
- */
- public JPanel getNavigatorPanel() {
- return navigatorPanel;
+ for (NetworkTreeNode child : removed_children) {
+ child.removeFromParent();
+ root.add(child);
}
- /**
- * Remove a network from the panel.
- *
- * @param network_id
- */
- public void removeNetwork(final Long network_id) {
- final CyNetwork network = netmgr.getNetwork(network_id);
- tableRowUpdateService.stopTracking(this,
network.getDefaultNodeTable());
- tableRowUpdateService.stopTracking(this,
network.getDefaultEdgeTable());
+ node.removeFromParent();
+ treeTable.getTree().updateUI();
+ treeTable.doLayout();
+ }
- final NetworkTreeNode node = getNetworkNode(network_id);
- final Enumeration children = node.children();
- final List<NetworkTreeNode> removed_children = new
ArrayList<NetworkTreeNode>();
+ /**
+ * update a network title
+ *
+ * @param network
+ */
+ private void updateTitle(final CyNetwork network, final String name) {
+ // updates the title in the network panel
+ if (treeTable.getTree().getSelectionPath() != null) { // user has
+ // selected
+ // something
+ treeTableModel.setValueAt(name,
treeTable.getTree().getSelectionPath().getLastPathComponent(), 0);
+ } else { // no selection, means the title has been changed
+ // programmatically
+ NetworkTreeNode node = getNetworkNode(network.getSUID());
+ treeTableModel.setValueAt(name, node, 0);
+ }
+ treeTable.getTree().updateUI();
+ treeTable.doLayout();
+ }
- while (children.hasMoreElements()) {
- removed_children.add((NetworkTreeNode)
children.nextElement());
- }
+ // // Event handlers /////
- for (NetworkTreeNode child : removed_children) {
- child.removeFromParent();
- root.add(child);
- }
+ public void handleEvent(NetworkAboutToBeDestroyedEvent nde) {
+ CyNetwork net = nde.getNetwork();
+ logger.debug("Network about to be destroyed " + net.getSUID());
+ removeNetwork(net.getSUID());
+ final RowSetMicroListener rsml = nameListeners.remove(net);
+ if (rsml != null)
+ eventHelper.removeMicroListener(rsml, RowSetMicroListener.class,
net.getCyRow().getTable());
+ }
- node.removeFromParent();
- treeTable.getTree().updateUI();
- treeTable.doLayout();
- }
+ public void handleEvent(NetworkAddedEvent e) {
+ CyNetwork net = e.getNetwork();
+ logger.debug("Got NetworkAddedEvent. Model ID = " + net.getSUID());
- /**
- * update a network title
- *
- * @param network
- */
- private void updateTitle(final CyNetwork network, final String name) {
- // updates the title in the network panel
- if (treeTable.getTree().getSelectionPath() != null) { // user
has
-
// selected
-
// something
- treeTableModel.setValueAt( name, treeTable
-
.getTree().getSelectionPath()
-
.getLastPathComponent(), 0);
- } else { // no selection, means the title has been changed
- // programmatically
- NetworkTreeNode node =
getNetworkNode(network.getSUID());
- treeTableModel.setValueAt( name, node, 0);
- }
- treeTable.getTree().updateUI();
- treeTable.doLayout();
- }
-
+ addNetwork(net.getSUID(), -1l);
+ RowSetMicroListener rsml = new AbstractNetworkNameListener(net) {
+ public void updateNetworkName(CyNetwork n, String name) {
+ updateTitle(n, name);
+ }
+ };
+ eventHelper.addMicroListener(rsml, RowSetMicroListener.class,
net.getCyRow());
+ nameListeners.put(e.getNetwork(), rsml);
+ }
- //// Event handlers /////
-
- public void handleEvent(NetworkAboutToBeDestroyedEvent nde) {
- CyNetwork net = nde.getNetwork();
- logger.debug("Network about to be destroyed " + net.getSUID());
- removeNetwork(net.getSUID());
- final RowSetMicroListener rsml = nameListeners.remove(net);
- if (rsml != null)
- eventHelper.removeMicroListener( rsml,
RowSetMicroListener.class, net.getCyRow().getTable() );
- }
+ public void handleEvent(SetCurrentNetworkViewEvent e) {
+ CyNetworkView view = e.getNetworkView();
- public void handleEvent(NetworkAddedEvent e) {
- CyNetwork net = e.getNetwork();
- logger.debug("Got NetworkAddedEvent. Model ID = " +
net.getSUID());
-
- addNetwork(net.getSUID(), -1l);
- RowSetMicroListener rsml = new AbstractNetworkNameListener(net)
{
- public void updateNetworkName(CyNetwork n, String name)
{
- updateTitle(n,name);
- }
- };
- eventHelper.addMicroListener(rsml, RowSetMicroListener.class,
net.getCyRow());
- nameListeners.put(e.getNetwork(),rsml);
+ if (view == null) {
+ logger.debug("Got SetCurrentNetworkViewEvent. null view");
+ return;
}
- public void handleEvent(SetCurrentNetworkViewEvent e) {
- CyNetworkView view = e.getNetworkView();
+ logger.debug("Got SetCurrentNetworkViewEvent. View ID = " +
e.getNetworkView().getSUID());
- if ( view == null ) {
- logger.debug("Got SetCurrentNetworkViewEvent. null
view");
- return;
- }
+ final long curr = e.getNetworkView().getModel().getSUID();
- logger.debug("Got SetCurrentNetworkViewEvent. View ID = " +
e.getNetworkView().getSUID());
-
- final long curr = e.getNetworkView().getModel().getSUID();
-
- if (currentNetId == null || curr != currentNetId.longValue())
- focusNetworkNode(curr);
+ if (currentNetId == null || curr != currentNetId.longValue())
+ focusNetworkNode(curr);
+ }
+
+ public void handleEvent(SetCurrentNetworkEvent e) {
+ CyNetwork cnet = e.getNetwork();
+ if (cnet == null) {
+ logger.debug("Set current network: null network");
+ return;
}
- public void handleEvent(SetCurrentNetworkEvent e) {
- CyNetwork cnet = e.getNetwork();
- if ( cnet == null ) {
- logger.debug("Set current network: null network");
- return;
- }
+ logger.debug("Set current network " + cnet.getSUID());
+ long curr = cnet.getSUID();
- logger.debug("Set current network " + cnet.getSUID());
- long curr = cnet.getSUID();
-
- if (currentNetId == null || curr != currentNetId.longValue())
- focusNetworkNode(curr);
- }
+ if (currentNetId == null || curr != currentNetId.longValue())
+ focusNetworkNode(curr);
+ }
- public void handleEvent(NetworkViewAboutToBeDestroyedEvent nde) {
- logger.debug("Network view about to be destroyed "
- + nde.getNetworkView().getModel().getSUID());
- treeTable.getTree().updateUI();
- }
+ public void handleEvent(NetworkViewAboutToBeDestroyedEvent nde) {
+ logger.debug("Network view about to be destroyed " +
nde.getNetworkView().getModel().getSUID());
+ treeTable.getTree().updateUI();
+ }
- public void handleEvent(NetworkViewAddedEvent nde) {
- logger.debug("Network view added "
- + nde.getNetworkView().getModel().getSUID());
-
- // Set current network view to the new one.
-
applicationManager.setCurrentNetworkView(nde.getNetworkView().getModel().getSUID());
-
- treeTable.getTree().updateUI();
- }
+ public void handleEvent(NetworkViewAddedEvent nde) {
+ logger.debug("Network view added " +
nde.getNetworkView().getModel().getSUID());
- @Override
- public void handleRowSets(final CyTable table, final List<RowSet>
rowSets) {
- boolean selectColumnHasBeenUpdated = false;
- for (final RowSet rowSet : rowSets) {
- if (rowSet.getColumn() == CyNetwork.SELECTED) {
- selectColumnHasBeenUpdated = true;
- break;
- }
- }
+ // Set current network view to the new one.
+
applicationManager.setCurrentNetworkView(nde.getNetworkView().getModel().getSUID());
- if (selectColumnHasBeenUpdated)
- treeTable.getTree().updateUI();
- }
+ treeTable.getTree().updateUI();
+ }
- @Override
- public void handleRowCreations(final CyTable table, final List<CyRow>
newRows) {
- treeTable.getTree().updateUI();
+ @Override
+ public void handleRowSets(final CyTable table, final List<RowSet> rowSets)
{
+ boolean selectColumnHasBeenUpdated = false;
+ for (final RowSet rowSet : rowSets) {
+ if (rowSet.getColumn() == CyNetwork.SELECTED) {
+ selectColumnHasBeenUpdated = true;
+ break;
+ }
}
- /**
- * DOCUMENT ME!
- *
- * @param network_id
- * DOCUMENT ME!
- * @param parent_id
- * DOCUMENT ME!
- */
- private void addNetwork(final Long network_id, final Long parent_id) {
- // first see if it exists
- if (getNetworkNode(network_id) == null) {
- final CyNetwork network = netmgr.getNetwork(network_id);
- tableRowUpdateService.startTracking(this,
network.getDefaultNodeTable());
- tableRowUpdateService.startTracking(this,
network.getDefaultEdgeTable());
+ if (selectColumnHasBeenUpdated)
+ treeTable.getTree().repaint();
+ }
- // logger.debug("NetworkPanel: addNetwork " +
network_id);
- NetworkTreeNode dmtn = new
NetworkTreeNode(netmgr.getNetwork(
- network_id).getCyRow().get("name",
String.class), network_id);
+ @Override
+ public void handleRowCreations(final CyTable table, final List<CyRow>
newRows) {
+ treeTable.getTree().repaint();
+ }
- if (parent_id != null && getNetworkNode(parent_id) !=
null) {
- getNetworkNode(parent_id).add(dmtn);
- } else {
- root.add(dmtn);
- }
+
+ private void addNetwork(final Long network_id, final Long parent_id) {
+ // first see if it exists
+ if (getNetworkNode(network_id) == null) {
+ final CyNetwork network = netmgr.getNetwork(network_id);
+ tableRowUpdateService.startTracking(this,
network.getDefaultNodeTable());
+ tableRowUpdateService.startTracking(this,
network.getDefaultEdgeTable());
- // apparently this doesn't fire valueChanged
- treeTable.getTree().collapsePath(
- new TreePath(new TreeNode[] { root }));
+ // logger.debug("NetworkPanel: addNetwork " + network_id);
+ NetworkTreeNode dmtn = new
NetworkTreeNode(netmgr.getNetwork(network_id).getCyRow()
+ .get("name", String.class), network_id);
- treeTable.getTree().updateUI();
- TreePath path = new TreePath(dmtn.getPath());
- treeTable.getTree().expandPath(path);
- treeTable.getTree().scrollPathToVisible(path);
- treeTable.doLayout();
+ if (parent_id != null && getNetworkNode(parent_id) != null) {
+ getNetworkNode(parent_id).add(dmtn);
+ } else {
+ root.add(dmtn);
+ }
- // this is necessary because valueChanged is not fired
above
- focusNetworkNode(network_id);
- } else {
- // logger.debug("addNetwork getNetworkTreeNode
returned: " +
- // getNetworkNode(network_id).getNetworkID());
- }
+ // apparently this doesn't fire valueChanged
+ treeTable.getTree().collapsePath(new TreePath(new TreeNode[] { root
}));
+
+ treeTable.getTree().updateUI();
+ TreePath path = new TreePath(dmtn.getPath());
+ treeTable.getTree().expandPath(path);
+ treeTable.getTree().scrollPathToVisible(path);
+ treeTable.doLayout();
+
+ // this is necessary because valueChanged is not fired above
+ focusNetworkNode(network_id);
+ } else {
+ // logger.debug("addNetwork getNetworkTreeNode returned: " +
+ // getNetworkNode(network_id).getNetworkID());
}
+ }
- /**
- * DOCUMENT ME!
- *
- * @param network_id
- * DOCUMENT ME!
- */
- public void focusNetworkNode(Long network_id) {
- // logger.debug("NetworkPanel: focus network node");
- DefaultMutableTreeNode node = getNetworkNode(network_id);
+ /**
+ * DOCUMENT ME!
+ *
+ * @param network_id
+ * DOCUMENT ME!
+ */
+ public void focusNetworkNode(Long network_id) {
+ // logger.debug("NetworkPanel: focus network node");
+ DefaultMutableTreeNode node = getNetworkNode(network_id);
- if (node != null) {
- // logger.debug("NetworkPanel - setting currentNetId");
- // do this first so that events triggered by subequent
lines don't
- // recurse unecessarily
- currentNetId = network_id;
+ if (node != null) {
+ // logger.debug("NetworkPanel - setting currentNetId");
+ // do this first so that events triggered by subequent lines don't
+ // recurse unecessarily
+ currentNetId = network_id;
- // fires valueChanged if the network isn't already
selected
-
treeTable.getTree().getSelectionModel().setSelectionPath(
- new TreePath(node.getPath()));
- treeTable.getTree().scrollPathToVisible(
- new TreePath(node.getPath()));
- }
+ // fires valueChanged if the network isn't already selected
+ treeTable.getTree().getSelectionModel().setSelectionPath(new
TreePath(node.getPath()));
+ treeTable.getTree().scrollPathToVisible(new
TreePath(node.getPath()));
}
+ }
- /**
- * DOCUMENT ME!
- *
- * @param network_id
- * DOCUMENT ME!
- *
- * @return DOCUMENT ME!
- */
- public NetworkTreeNode getNetworkNode(Long network_id) {
- Enumeration tree_node_enum = root.breadthFirstEnumeration();
+ /**
+ * DOCUMENT ME!
+ *
+ * @param network_id
+ * DOCUMENT ME!
+ *
+ * @return DOCUMENT ME!
+ */
+ public NetworkTreeNode getNetworkNode(Long network_id) {
+ Enumeration tree_node_enum = root.breadthFirstEnumeration();
- while (tree_node_enum.hasMoreElements()) {
- NetworkTreeNode node = (NetworkTreeNode) tree_node_enum
- .nextElement();
+ while (tree_node_enum.hasMoreElements()) {
+ NetworkTreeNode node = (NetworkTreeNode)
tree_node_enum.nextElement();
- if (node.getNetworkID().equals(network_id)) {
- return node;
- }
- }
-
- return null;
+ if (node.getNetworkID().equals(network_id)) {
+ return node;
+ }
}
- /**
- * This method highlights a network in the NetworkPanel.
- *
- * @param e
- * DOCUMENT ME!
- */
- public void valueChanged(TreeSelectionEvent e) {
- // logger.debug("NetworkPanel: valueChanged - " +
- // e.getSource().getClass().getName());
- JTree mtree = treeTable.getTree();
+ return null;
+ }
- // sets the "current" network based on last node in the tree
selected
- NetworkTreeNode node = (NetworkTreeNode) mtree
- .getLastSelectedPathComponent();
- if (node == null || node.getUserObject() == null) {
- // logger.debug("NetworkPanel: null node - returning");
- return;
- }
+ /**
+ * This method highlights a network in the NetworkPanel.
+ *
+ * @param e
+ * DOCUMENT ME!
+ */
+ public void valueChanged(TreeSelectionEvent e) {
+ // logger.debug("NetworkPanel: valueChanged - " +
+ // e.getSource().getClass().getName());
+ JTree mtree = treeTable.getTree();
- applicationManager.setCurrentNetwork(node.getNetworkID());
+ // sets the "current" network based on last node in the tree selected
+ NetworkTreeNode node = (NetworkTreeNode)
mtree.getLastSelectedPathComponent();
+ if (node == null || node.getUserObject() == null) {
+ // logger.debug("NetworkPanel: null node - returning");
+ return;
+ }
- // creates a list of all selected networks
- List<Long> networkList = new LinkedList<Long>();
- try {
- for (int i = mtree.getMinSelectionRow(); i <= mtree
- .getMaxSelectionRow(); i++) {
- NetworkTreeNode n = (NetworkTreeNode)
mtree.getPathForRow(i)
- .getLastPathComponent();
- if (n != null && n.getUserObject() != null
- && mtree.isRowSelected(i))
- networkList.add(n.getNetworkID());
- }
- } catch (Exception ex) {
- ex.printStackTrace();
- }
+ applicationManager.setCurrentNetwork(node.getNetworkID());
- if (networkList.size() > 0)
- applicationManager.setSelectedNetworkViews(networkList);
+ // creates a list of all selected networks
+ List<Long> networkList = new LinkedList<Long>();
+ try {
+ for (int i = mtree.getMinSelectionRow(); i <=
mtree.getMaxSelectionRow(); i++) {
+ NetworkTreeNode n = (NetworkTreeNode)
mtree.getPathForRow(i).getLastPathComponent();
+ if (n != null && n.getUserObject() != null &&
mtree.isRowSelected(i))
+ networkList.add(n.getNetworkID());
+ }
+ } catch (Exception ex) {
+ ex.printStackTrace();
}
- /**
- * Inner class that extends the AbstractTreeTableModel
- */
- class NetworkTreeTableModel extends AbstractTreeTableModel {
- String[] columns = { "Network", "Nodes", "Edges" };
- Class[] columns_class = { TreeTableModel.class, String.class,
- String.class };
+ if (networkList.size() > 0)
+ applicationManager.setSelectedNetworkViews(networkList);
+ }
- public NetworkTreeTableModel(Object root) {
- super(root);
- }
+ /**
+ * Inner class that extends the AbstractTreeTableModel
+ */
+ class NetworkTreeTableModel extends AbstractTreeTableModel {
+ String[] columns = { "Network", "Nodes", "Edges" };
+ Class[] columns_class = { TreeTableModel.class, String.class,
String.class };
- public Object getChild(Object parent, int index) {
- Enumeration tree_node_enum = ((DefaultMutableTreeNode)
getRoot())
- .breadthFirstEnumeration();
+ public NetworkTreeTableModel(Object root) {
+ super(root);
+ }
- while (tree_node_enum.hasMoreElements()) {
- DefaultMutableTreeNode node =
(DefaultMutableTreeNode) tree_node_enum
- .nextElement();
+ public Object getChild(Object parent, int index) {
+ Enumeration tree_node_enum = ((DefaultMutableTreeNode)
getRoot()).breadthFirstEnumeration();
- if (node == parent) {
- return node.getChildAt(index);
- }
- }
+ while (tree_node_enum.hasMoreElements()) {
+ DefaultMutableTreeNode node = (DefaultMutableTreeNode)
tree_node_enum.nextElement();
- return null;
+ if (node == parent) {
+ return node.getChildAt(index);
}
+ }
- public int getChildCount(Object parent) {
- Enumeration tree_node_enum = ((DefaultMutableTreeNode)
getRoot())
- .breadthFirstEnumeration();
+ return null;
+ }
- while (tree_node_enum.hasMoreElements()) {
- DefaultMutableTreeNode node =
(DefaultMutableTreeNode) tree_node_enum
- .nextElement();
+ public int getChildCount(Object parent) {
+ Enumeration tree_node_enum = ((DefaultMutableTreeNode)
getRoot()).breadthFirstEnumeration();
- if (node == parent) {
- return node.getChildCount();
- }
- }
+ while (tree_node_enum.hasMoreElements()) {
+ DefaultMutableTreeNode node = (DefaultMutableTreeNode)
tree_node_enum.nextElement();
- return 0;
+ if (node == parent) {
+ return node.getChildCount();
}
+ }
- public int getColumnCount() {
- return columns.length;
- }
+ return 0;
+ }
- public String getColumnName(int column) {
- return columns[column];
- }
+ public int getColumnCount() {
+ return columns.length;
+ }
- public Class getColumnClass(int column) {
- return columns_class[column];
- }
+ public String getColumnName(int column) {
+ return columns[column];
+ }
- public Object getValueAt(Object node, int column) {
- if (column == 0)
- return ((DefaultMutableTreeNode)
node).getUserObject();
- else if (column == 1) {
- CyNetwork cyNetwork = netmgr
- .getNetwork(((NetworkTreeNode)
node).getNetworkID());
+ public Class getColumnClass(int column) {
+ return columns_class[column];
+ }
- return ""
- + cyNetwork.getNodeCount()
- + "("
- +
CyTableUtil.getNodesInState(cyNetwork,
- "selected",
true).size() + ")";
- } else if (column == 2) {
- CyNetwork cyNetwork = netmgr
- .getNetwork(((NetworkTreeNode)
node).getNetworkID());
+ public Object getValueAt(Object node, int column) {
+ if (column == 0)
+ return ((DefaultMutableTreeNode) node).getUserObject();
+ else if (column == 1) {
+ CyNetwork cyNetwork = netmgr.getNetwork(((NetworkTreeNode)
node).getNetworkID());
- return ""
- + cyNetwork.getEdgeCount()
- + "("
- +
CyTableUtil.getEdgesInState(cyNetwork,
- "selected",
true).size() + ")";
- }
+ return "" + cyNetwork.getNodeCount() + "("
+ + CyTableUtil.getNodesInState(cyNetwork, "selected",
true).size() + ")";
+ } else if (column == 2) {
+ CyNetwork cyNetwork = netmgr.getNetwork(((NetworkTreeNode)
node).getNetworkID());
- return "";
- }
+ return "" + cyNetwork.getEdgeCount() + "("
+ + CyTableUtil.getEdgesInState(cyNetwork, "selected",
true).size() + ")";
+ }
- public void setValueAt(Object aValue, Object node, int column) {
- if (column == 0) {
- ((DefaultMutableTreeNode)
node).setUserObject(aValue);
- } else
- JOptionPane.showMessageDialog(NetworkPanel.this,
- "Error: assigning value at in
NetworkPanel");
- // This function is not used to set node and edge
values.
- }
+ return "";
}
- public class NetworkTreeNode extends DefaultMutableTreeNode {
- private final static long serialVersionUID = 1213748836736485L;
- protected Long network_uid;
+ public void setValueAt(Object aValue, Object node, int column) {
+ if (column == 0) {
+ ((DefaultMutableTreeNode) node).setUserObject(aValue);
+ } else
+ JOptionPane.showMessageDialog(NetworkPanel.this, "Error:
assigning value at in NetworkPanel");
+ // This function is not used to set node and edge values.
+ }
+ }
- public NetworkTreeNode(Object userobj, Long id) {
- super(userobj.toString());
- network_uid = id;
- }
+ public class NetworkTreeNode extends DefaultMutableTreeNode {
+ private final static long serialVersionUID = 1213748836736485L;
+ protected Long network_uid;
- protected void setNetworkID(Long id) {
- network_uid = id;
- }
+ public NetworkTreeNode(Object userobj, Long id) {
+ super(userobj.toString());
+ network_uid = id;
+ }
- protected Long getNetworkID() {
- return network_uid;
- }
+ protected void setNetworkID(Long id) {
+ network_uid = id;
}
- private class TreeCellRenderer extends DefaultTreeCellRenderer {
- private final static long serialVersionUID = 1213748836751014L;
+ protected Long getNetworkID() {
+ return network_uid;
+ }
+ }
- public Component getTreeCellRendererComponent(JTree tree,
Object value,
- boolean sel, boolean expanded, boolean leaf,
int row,
- boolean hasFocus) {
- super.getTreeCellRendererComponent(tree, value, sel,
expanded,
- leaf, row, hasFocus);
+ private class TreeCellRenderer extends DefaultTreeCellRenderer {
+ private final static long serialVersionUID = 1213748836751014L;
- if (hasView(value)) {
-
setBackgroundNonSelectionColor(java.awt.Color.green.brighter());
-
setBackgroundSelectionColor(java.awt.Color.green.darker());
- } else {
-
setBackgroundNonSelectionColor(java.awt.Color.red.brighter());
-
setBackgroundSelectionColor(java.awt.Color.red.darker());
- }
+ public Component getTreeCellRendererComponent(JTree tree, Object value,
boolean sel, boolean expanded,
+ boolean leaf, int row, boolean hasFocus) {
+ super.getTreeCellRendererComponent(tree, value, sel, expanded,
leaf, row, hasFocus);
- return this;
- }
+ if (hasView(value)) {
+ setBackgroundNonSelectionColor(java.awt.Color.green.brighter());
+ setBackgroundSelectionColor(java.awt.Color.green.darker());
+ } else {
+ setBackgroundNonSelectionColor(java.awt.Color.red.brighter());
+ setBackgroundSelectionColor(java.awt.Color.red.darker());
+ }
- private boolean hasView(Object value) {
- NetworkTreeNode node = (NetworkTreeNode) value;
- CyNetwork n = netmgr.getNetwork(node.getNetworkID());
- if (n != null)
- setToolTipText(n.getCyRow().get("name",
String.class));
- else
- setToolTipText("Root");
+ return this;
+ }
- return
networkViewManager.viewExists(node.getNetworkID());
- }
+ private boolean hasView(Object value) {
+ NetworkTreeNode node = (NetworkTreeNode) value;
+ CyNetwork n = netmgr.getNetwork(node.getNetworkID());
+ if (n != null)
+ setToolTipText(n.getCyRow().get("name", String.class));
+ else
+ setToolTipText("Root");
+
+ return networkViewManager.viewExists(node.getNetworkID());
}
+ }
+ /**
+ * This class listens to mouse events from the TreeTable, if the mouse
event
+ * is one that is canonically associated with a popup menu (ie, a right
+ * click) it will pop up the menu with option for destroying view, creating
+ * view, and destroying network (this is platform specific apparently)
+ */
+ private class PopupListener extends MouseAdapter {
/**
- * This class listens to mouse events from the TreeTable, if the mouse
event
- * is one that is canonically associated with a popup menu (ie, a right
- * click) it will pop up the menu with option for destroying view,
creating
- * view, and destroying network (this is platform specific apparently)
+ * Don't know why you need both of these, but this is how they did it in
+ * the example
*/
- private class PopupListener extends MouseAdapter {
- /**
- * Don't know why you need both of these, but this is how they
did it in
- * the example
- */
- public void mousePressed(MouseEvent e) {
- maybeShowPopup(e);
- }
+ public void mousePressed(MouseEvent e) {
+ maybeShowPopup(e);
+ }
- /**
- * Don't know why you need both of these, but this is how they
did it in
- * the example
- */
- public void mouseReleased(MouseEvent e) {
- maybeShowPopup(e);
- }
+ /**
+ * Don't know why you need both of these, but this is how they did it in
+ * the example
+ */
+ public void mouseReleased(MouseEvent e) {
+ maybeShowPopup(e);
+ }
- /**
- * if the mouse press is of the correct type, this function
will maybe
- * display the popup
- */
- private void maybeShowPopup(MouseEvent e) {
- // check for the popup type
- if (e.isPopupTrigger()) {
- // get the row where the mouse-click originated
- int row = treeTable.rowAtPoint(e.getPoint());
+ /**
+ * if the mouse press is of the correct type, this function will maybe
+ * display the popup
+ */
+ private void maybeShowPopup(MouseEvent e) {
+ // check for the popup type
+ if (e.isPopupTrigger()) {
+ // get the row where the mouse-click originated
+ int row = treeTable.rowAtPoint(e.getPoint());
- if (row != -1) {
- JTree tree = treeTable.getTree();
- TreePath treePath =
tree.getPathForRow(row);
- Long networkID = ((NetworkTreeNode)
treePath
-
.getLastPathComponent()).getNetworkID();
+ if (row != -1) {
+ JTree tree = treeTable.getTree();
+ TreePath treePath = tree.getPathForRow(row);
+ Long networkID = ((NetworkTreeNode)
treePath.getLastPathComponent()).getNetworkID();
- CyNetwork cyNetwork =
netmgr.getNetwork(networkID);
+ CyNetwork cyNetwork = netmgr.getNetwork(networkID);
- if (cyNetwork != null) {
- // enable/disable any actions
based on state of system
- for ( CyAction action :
popupActions.values() )
-
action.updateEnableState();
+ if (cyNetwork != null) {
+ // enable/disable any actions based on state of system
+ for (CyAction action : popupActions.values())
+ action.updateEnableState();
- // then popup menu
- popup.show(e.getComponent(),
e.getX(), e.getY());
- }
- }
- }
+ // then popup menu
+ popup.show(e.getComponent(), e.getX(), e.getY());
+ }
}
+ }
}
+ }
}
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