See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/2323/changes>
Changes: [jm] Fixed unit tests in io-impl ------------------------------------------ [...truncated 144 lines...] A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeHandleList.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleNetworkAttribute.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDFTitle.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDFType.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDFIdentifier.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleRDFDescription.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/HandleEdgeHandle.java A src/main/java/org/cytoscape/io/internal/read/xgmml/handler/AttributeValueUtil.java A src/main/java/org/cytoscape/io/internal/read/CopyInputStream.java A src/main/java/org/cytoscape/io/internal/read/bookmarks A src/main/java/org/cytoscape/io/internal/read/bookmarks/BookmarkReaderFactory.java A src/main/java/org/cytoscape/io/internal/read/bookmarks/BookmarkReader.java A src/main/java/org/cytoscape/io/internal/read/bookmarks/BookmarkFileFilter.java A src/main/java/org/cytoscape/io/internal/read/properties A src/main/java/org/cytoscape/io/internal/read/properties/PropertiesReader.java A src/main/java/org/cytoscape/io/internal/read/properties/PropertiesFileFilter.java A src/main/java/org/cytoscape/io/internal/read/properties/PropertiesReaderFactory.java A src/main/java/org/cytoscape/io/internal/read/CySessionReaderManagerImpl.java A src/main/java/org/cytoscape/io/internal/read/expression A src/main/java/org/cytoscape/io/internal/read/expression/mRNAMeasurement.java A src/main/java/org/cytoscape/io/internal/read/expression/ExpressionData.java A src/main/java/org/cytoscape/io/internal/read/CyPropertyReaderManagerImpl.java A src/main/java/org/cytoscape/io/internal/read/CyNetworkViewReaderManagerImpl.java A src/main/java/org/cytoscape/io/internal/read/CyTableReaderManagerImpl.java A src/main/java/org/cytoscape/io/internal/read/AbstractPropertyReaderFactory.java A src/main/java/org/cytoscape/io/internal/read/AbstractNetworkViewReaderFactory.java A src/main/java/org/cytoscape/io/internal/read/AbstractTableReaderFactory.java A src/main/java/org/cytoscape/io/internal/read/GenericReaderManager.java A src/main/java/org/cytoscape/io/internal/read/AbstractPropertyReader.java A src/main/java/org/cytoscape/io/internal/read/AbstractNetworkViewReader.java A src/main/java/org/cytoscape/io/internal/read/MarkSupportedInputStream.java A src/main/java/org/cytoscape/io/internal/read/AbstractTableReader.java A src/main/java/org/cytoscape/io/internal/util A src/main/java/org/cytoscape/io/internal/util/StreamUtilImpl.java A src/main/java/org/cytoscape/io/internal/util/ReadUtils.java A src/main/resources A src/main/resources/META-INF A src/main/resources/META-INF/spring A src/main/resources/META-INF/spring/bundle-context-osgi.xml A src/main/resources/META-INF/spring/bundle-context.xml A pom.xml U . At revision 24915 Found mavenVersion 3.0.3 from file jar:file:/R1/tools/maven/apache-maven-3.0.3/lib/maven-core-3.0.3.jar!/META-INF/maven/org.apache.maven/maven-core/pom.properties No emails were triggered. Parsing POMs [trunk] $ java -cp /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven3-agent-1.401.jar:/R1/tools/maven/apache-maven-3.0.3/boot/plexus-classworlds-2.4.jar org.jvnet.hudson.maven3.agent.Maven3Main /R1/tools/maven/apache-maven-3.0.3 /R1/resources/webservers/tomcat_2/webapps/jenkins/WEB-INF/lib/remoting-1.401.jar /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven3-interceptor-1.401.jar 42198 <===[HUDSON REMOTING CAPACITY]===> channel started Executing Maven: -B -f <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/pom.xml> deploy [INFO] Scanning for projects... [WARNING] [WARNING] Some problems were encountered while building the effective model for org.cytoscape:io-impl:bundle:3.0.0-alpha2-SNAPSHOT [WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: org.cytoscape:io-api:jar -> duplicate declaration of version 3.0.0-alpha3-SNAPSHOT @ line 115, column 15 [WARNING] [WARNING] It is highly recommended to fix these problems because they threaten the stability of your build. [WARNING] [WARNING] For this reason, future Maven versions might no longer support building such malformed projects. 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http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/vizmap-api/3.0.0-alpha3-SNAPSHOT/vizmap-api-3.0.0-alpha3-20110504.005146-167.jar (9 KB at 61.8 KB/sec) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/model-impl/3.0.0-alpha3-SNAPSHOT/model-impl-3.0.0-alpha3-20110504.005035-230.jar Downloaded: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/model-impl/3.0.0-alpha3-SNAPSHOT/model-impl-3.0.0-alpha3-20110504.005035-230.jar (63 KB at 443.1 KB/sec) Downloaded: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/model-api/3.0.0-alpha3-SNAPSHOT/model-api-3.0.0-alpha3-20110504.002117-121-tests.jar (59 KB at 219.3 KB/sec) Downloaded: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/session-api/3.0.0-alpha3-SNAPSHOT/session-api-3.0.0-alpha3-20110504.005446-225.jar (16 KB at 24.7 KB/sec) Downloaded: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/core-task-api/3.0.0-alpha3-SNAPSHOT/core-task-api-3.0.0-alpha3-20110504.005603-228.jar (21 KB at 29.8 KB/sec) Downloaded: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/presentation-api/3.0.0-alpha3-SNAPSHOT/presentation-api-3.0.0-alpha3-20110504.004849-224.jar (36 KB at 14.2 KB/sec) [INFO] [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ io-impl --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] Copying 0 resource [INFO] [INFO] --- maven-pax-plugin:1.5-SNAPSHOT:compile (default-compile) @ io-impl --- [INFO] Compiling 106 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/target/classes> [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] [INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ io-impl --- [INFO] Copying 10 resources [INFO] [INFO] --- maven-pax-plugin:1.5-SNAPSHOT:testCompile (default-testCompile) @ io-impl --- [INFO] Compiling 6 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/target/test-classes> [INFO] [recovering meta-data] mojoFailed org.ops4j:maven-pax-plugin:1.5-SNAPSHOT(default-testCompile) projectFailed org.cytoscape:io-impl:3.0.0-alpha2-SNAPSHOT [JENKINS] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 IO impl/modules/org.cytoscape$io-impl/builds/2011-05-04_10-00-55/archive/org.cytoscape/io-impl/3.0.0-alpha2-SNAPSHOT/pom.xml sessionEnded [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 36.634s [INFO] Finished at: Wed May 04 10:01:34 EDT 2011 [INFO] Final Memory: 26M/151M [INFO] ------------------------------------------------------------------------ maven builder waiting mavenExecutionResult exceptions not empty org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.ops4j:maven-pax-plugin:1.5-SNAPSHOT:testCompile (default-testCompile) on project io-impl: Compilation failure <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/src/test/java/org/cytoscape/io/internal/read/AbstractNetworkViewReaderTester.java>:[63,31] cannot find symbol symbol : constructor NetworkViewTestSupport(org.cytoscape.property.CyProperty<java.util.Properties>) location: class org.cytoscape.test.support.NetworkViewTestSupport at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:213) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59) at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:319) at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156) at org.jvnet.hudson.maven3.launcher.Maven3Launcher.main(Maven3Launcher.java:79) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.codehaus.plexus.classworlds.launcher.Launcher.launchStandard(Launcher.java:329) at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:239) at org.jvnet.hudson.maven3.agent.Maven3Main.launch(Maven3Main.java:146) at hudson.maven.Maven3Builder.call(Maven3Builder.java:124) at hudson.maven.Maven3Builder.call(Maven3Builder.java:71) at hudson.remoting.UserRequest.perform(UserRequest.java:114) at hudson.remoting.UserRequest.perform(UserRequest.java:48) at hudson.remoting.Request$2.run(Request.java:270) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) at java.util.concurrent.FutureTask.run(FutureTask.java:138) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) at java.lang.Thread.run(Thread.java:619) Caused by: org.apache.maven.plugin.CompilationFailureException: Compilation failure <http://cytoscape.wodaklab.org/hudson/job/Cy3%20IO%20impl/ws/trunk/src/test/java/org/cytoscape/io/internal/read/AbstractNetworkViewReaderTester.java>:[63,31] cannot find symbol symbol : constructor NetworkViewTestSupport(org.cytoscape.property.CyProperty<java.util.Properties>) location: class org.cytoscape.test.support.NetworkViewTestSupport at org.apache.maven.plugin.AbstractCompilerMojo.execute(AbstractCompilerMojo.java:516) at org.apache.maven.plugin.TestCompilerMojo.execute(TestCompilerMojo.java:102) at org.ops4j.pax.construct.lifecycle.BundleTestCompilerMojo.execute(BundleTestCompilerMojo.java:70) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:101) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:209) ... 27 more Sending e-mails to: [email protected] channel stopped Skipping sonar analysis due to SCM build trigger -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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