Author: kono
Date: 2011-05-04 15:29:26 -0700 (Wed, 04 May 2011)
New Revision: 24929
Modified:
core3/core-task-impl/trunk/src/main/java/org/cytoscape/task/internal/quickstart/subnetworkbuilder/NCBISearchClient.java
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/quickstart/subnetworkbuilder/NCBISearchClientTest.java
Log:
First version supporting other ID sets (gene symbol/ensemble) in subnetwork
builder.
Modified:
core3/core-task-impl/trunk/src/main/java/org/cytoscape/task/internal/quickstart/subnetworkbuilder/NCBISearchClient.java
===================================================================
---
core3/core-task-impl/trunk/src/main/java/org/cytoscape/task/internal/quickstart/subnetworkbuilder/NCBISearchClient.java
2011-05-04 22:27:29 UTC (rev 24928)
+++
core3/core-task-impl/trunk/src/main/java/org/cytoscape/task/internal/quickstart/subnetworkbuilder/NCBISearchClient.java
2011-05-04 22:29:26 UTC (rev 24929)
@@ -71,7 +71,7 @@
String urlString = BASE_URL + builder.toString();
urlString = urlString.substring(0, urlString.length() - 4);
- System.out.println("URL = " + urlString);
+ logger.debug("NCBI Service Query URL = " + urlString);
return new URL(urlString);
}
Modified:
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/quickstart/subnetworkbuilder/NCBISearchClientTest.java
===================================================================
---
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/quickstart/subnetworkbuilder/NCBISearchClientTest.java
2011-05-04 22:27:29 UTC (rev 24928)
+++
core3/core-task-impl/trunk/src/test/java/org/cytoscape/task/internal/quickstart/subnetworkbuilder/NCBISearchClientTest.java
2011-05-04 22:29:26 UTC (rev 24929)
@@ -50,14 +50,16 @@
"YAL038W YCR012W YGR254W YHR174W YIL133C
YLR044C YOL120C YNL301C YCL030C YDR171W " +
"YBR093C YER074W YIL069C YAL038W YOL127W
YDR050C YOL086C YER143W";
- final Set<String> result1 = client.convert(symbols, true);
- final Set<String> result2= client.convert(symbols2, true);
+ // Enable this to test client.
+
+// final Set<String> result1 = client.convert(symbols, true);
+// final Set<String> result2= client.convert(symbols2, true);
+//
+// System.out.println("Value = " + result1.size());
+// System.out.println("Value = " + result2.size());
+//
+// assertNotNull(result1);
- System.out.println("Value = " + result1.size());
- System.out.println("Value = " + result2.size());
-
- assertNotNull(result1);
-
}
}
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