See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20biopax-impl/88/>
------------------------------------------ Started by upstream project "Cy3 IO api" build number 2851 Checking out http://chianti.ucsd.edu/svn/core3/biopax-impl/trunk A osgi.bnd A src A src/main A src/main/java A src/main/java/org A src/main/java/org/cytoscape A src/main/java/org/cytoscape/biopax AU src/main/java/org/cytoscape/biopax/NetworkListener.java AU src/main/java/org/cytoscape/biopax/BioPaxContainer.java AU src/main/java/org/cytoscape/biopax/MapBioPaxToCytoscapeFactory.java A src/main/java/org/cytoscape/biopax/internal AU src/main/java/org/cytoscape/biopax/internal/ExternalLink.java AU src/main/java/org/cytoscape/biopax/internal/MapBioPaxToCytoscapeImpl.java AU src/main/java/org/cytoscape/biopax/internal/BiopaxPlugin.java AU src/main/java/org/cytoscape/biopax/internal/BioPaxNetworkViewTaskFactory.java AU src/main/java/org/cytoscape/biopax/internal/BioPaxFilter.java AU src/main/java/org/cytoscape/biopax/internal/MapBioPaxToCytoscapeFactoryImpl.java AU src/main/java/org/cytoscape/biopax/internal/BioPaxFactory.java A src/main/java/org/cytoscape/biopax/internal/view AU src/main/java/org/cytoscape/biopax/internal/view/BioPaxCytoPanelComponent.java AU src/main/java/org/cytoscape/biopax/internal/view/BioPaxContainerImpl.java AU src/main/java/org/cytoscape/biopax/internal/view/BioPaxDetailsPanel.java AU src/main/java/org/cytoscape/biopax/internal/view/EdgeFilterUi.java AU src/main/java/org/cytoscape/biopax/internal/view/AboutPanel.java AU src/main/java/org/cytoscape/biopax/internal/view/LegendPanel.java AU src/main/java/org/cytoscape/biopax/internal/BioPaxNetworkViewReaderTask.java A src/main/java/org/cytoscape/biopax/internal/action AU src/main/java/org/cytoscape/biopax/internal/action/LaunchExternalBrowser.java AU src/main/java/org/cytoscape/biopax/internal/action/NetworkListenerImpl.java AU src/main/java/org/cytoscape/biopax/internal/action/DisplayBioPaxXmlActionNodeViewTaskFactory.java AU src/main/java/org/cytoscape/biopax/internal/action/ExportAsBioPAXTaskFactory.java AU src/main/java/org/cytoscape/biopax/internal/action/ExportAsBioPAXAction.java AU src/main/java/org/cytoscape/biopax/internal/action/ExportAsBioPAXTask.java AU src/main/java/org/cytoscape/biopax/internal/action/SelectionListener.java AU src/main/java/org/cytoscape/biopax/internal/action/DisplayBioPaxXmlTask.java AU src/main/java/org/cytoscape/biopax/internal/action/DisplayBioPaxDetails.java A src/main/java/org/cytoscape/biopax/internal/util AU src/main/java/org/cytoscape/biopax/internal/util/AttributeUtil.java AU src/main/java/org/cytoscape/biopax/internal/util/ParentFinder.java AU src/main/java/org/cytoscape/biopax/internal/util/CyNetworkUtil.java AU src/main/java/org/cytoscape/biopax/internal/util/WebFileConnect.java AU src/main/java/org/cytoscape/biopax/internal/util/CytoscapeWrapper.java AU src/main/java/org/cytoscape/biopax/internal/util/CySessionUtil.java AU src/main/java/org/cytoscape/biopax/internal/util/ExternalLinkUtil.java A src/main/java/org/cytoscape/biopax/util AU src/main/java/org/cytoscape/biopax/util/BioPaxUtil.java AU src/main/java/org/cytoscape/biopax/util/BioPaxVisualStyleUtil.java AU src/main/java/org/cytoscape/biopax/MapBioPaxToCytoscape.java A src/main/resources A src/main/resources/META-INF A src/main/resources/META-INF/spring AU src/main/resources/META-INF/spring/bundle-context-osgi.xml AU src/main/resources/META-INF/spring/bundle-context.xml A src/main/resources/org A src/main/resources/org/cytoscape A src/main/resources/org/cytoscape/biopax A src/main/resources/org/cytoscape/biopax/internal AU src/main/resources/org/cytoscape/biopax/internal/phos-node-selected-top.jpg AU src/main/resources/org/cytoscape/biopax/internal/phos-node-selected-bottom.jpg AU src/main/resources/org/cytoscape/biopax/internal/phos-node-selected-left.jpg A src/main/resources/org/cytoscape/biopax/internal/view AU src/main/resources/org/cytoscape/biopax/internal/view/info.gif AU src/main/resources/org/cytoscape/biopax/internal/view/legend.html AU src/main/resources/org/cytoscape/biopax/internal/view/legend.png AU src/main/resources/org/cytoscape/biopax/internal/view/legend.gif AU src/main/resources/org/cytoscape/biopax/internal/view/binary_legend.html AU src/main/resources/org/cytoscape/biopax/internal/view/glasses.gif AU src/main/resources/org/cytoscape/biopax/internal/view/read_obj.gif AU src/main/resources/org/cytoscape/biopax/internal/phos-node.jpg AU src/main/resources/org/cytoscape/biopax/internal/phos-node-selected-right.jpg AU pom.xml At revision 24968 no change for http://chianti.ucsd.edu/svn/core3/biopax-impl/trunk since the previous build Found mavenVersion 3.0.3 from file jar:file:/R1/tools/maven/apache-maven-3.0.3/lib/maven-core-3.0.3.jar!/META-INF/maven/org.apache.maven/maven-core/pom.properties No emails were triggered. Parsing POMs [trunk] $ java -cp /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven3-agent-1.401.jar:/R1/tools/maven/apache-maven-3.0.3/boot/plexus-classworlds-2.4.jar org.jvnet.hudson.maven3.agent.Maven3Main /R1/tools/maven/apache-maven-3.0.3 /R1/resources/webservers/tomcat_2/webapps/jenkins/WEB-INF/lib/remoting-1.401.jar /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven3-interceptor-1.401.jar 51808 <===[HUDSON REMOTING CAPACITY]===> channel started Executing Maven: -B -f <http://cytoscape.wodaklab.org/hudson/job/Cy3%20biopax-impl/ws/trunk/pom.xml> deploy [INFO] Scanning for projects... [WARNING] [WARNING] Some problems were encountered while building the effective model for org.cytoscape:biopax-impl:bundle:1.0-SNAPSHOT [WARNING] The expression ${pom.version} is deprecated. Please use ${project.version} instead. [WARNING] [WARNING] It is highly recommended to fix these problems because they threaten the stability of your build. [WARNING] [WARNING] For this reason, future Maven versions might no longer support building such malformed projects. [WARNING] [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.biopax-impl [org.cytoscape.biopax] 1.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ biopax-impl --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 14 resources [INFO] [INFO] --- maven-pax-plugin:1.5-SNAPSHOT:compile (default-compile) @ biopax-impl --- [INFO] Compiling 36 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20biopax-impl/ws/trunk/target/classes> [INFO] [recovering meta-data] mojoFailed org.ops4j:maven-pax-plugin:1.5-SNAPSHOT(default-compile) projectFailed org.cytoscape:biopax-impl:1.0-SNAPSHOT [JENKINS] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20biopax-impl/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 biopax-impl/modules/org.cytoscape$biopax-impl/builds/2011-05-09_16-11-50/archive/org.cytoscape/biopax-impl/1.0-SNAPSHOT/pom.xml sessionEnded [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 4.661s [INFO] Finished at: Mon May 09 16:11:58 EDT 2011 [INFO] Final Memory: 20M/219M [INFO] ------------------------------------------------------------------------ mavenExecutionResult exceptions not empty org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.ops4j:maven-pax-plugin:1.5-SNAPSHOT:compile (default-compile) on project biopax-impl: Compilation failure at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:213) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59) at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:319) at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156) at org.jvnet.hudson.maven3.launcher.Maven3Launcher.main(Maven3Launcher.java:79) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.codehaus.plexus.classworlds.launcher.Launcher.launchStandard(Launcher.java:329) at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:239) at org.jvnet.hudson.maven3.agent.Maven3Main.launch(Maven3Main.java:146) at hudson.maven.Maven3Builder.call(Maven3Builder.java:124) at hudson.maven.Maven3Builder.call(Maven3Builder.java:71) at hudson.remoting.UserRequest.perform(UserRequest.java:114) at hudson.remoting.UserRequest.perform(UserRequest.java:48) at hudson.remoting.Request$2.run(Request.java:270) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) at java.util.concurrent.FutureTask.run(FutureTask.java:138) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) at java.lang.Thread.run(Thread.java:619) Caused by: org.apache.maven.plugin.CompilationFailureException: Compilation failure at org.apache.maven.plugin.AbstractCompilerMojo.execute(AbstractCompilerMojo.java:516) at org.apache.maven.plugin.CompilerMojo.execute(CompilerMojo.java:114) at org.ops4j.pax.construct.lifecycle.BundleCompilerMojo.execute(BundleCompilerMojo.java:74) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:101) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:209) ... 27 more Sending e-mails to: [email protected] channel stopped Skipping sonar analysis due to snapshot dependency build trigger -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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