Author: kono
Date: 2011-05-09 17:02:32 -0700 (Mon, 09 May 2011)
New Revision: 24986

Modified:
   
core3/swing-application-impl/trunk/src/main/java/org/cytoscape/internal/view/NetworkViewManager.java
Log:
Broken formats are fixed.

Modified: 
core3/swing-application-impl/trunk/src/main/java/org/cytoscape/internal/view/NetworkViewManager.java
===================================================================
--- 
core3/swing-application-impl/trunk/src/main/java/org/cytoscape/internal/view/NetworkViewManager.java
        2011-05-09 23:34:54 UTC (rev 24985)
+++ 
core3/swing-application-impl/trunk/src/main/java/org/cytoscape/internal/view/NetworkViewManager.java
        2011-05-10 00:02:32 UTC (rev 24986)
@@ -86,469 +86,469 @@
  * 
  */
 public class NetworkViewManager extends InternalFrameAdapter implements 
NetworkViewAddedListener,
-       NetworkViewAboutToBeDestroyedListener, SetCurrentNetworkViewListener, 
SetCurrentNetworkListener,
-       SessionLoadedListener {
+               NetworkViewAboutToBeDestroyedListener, 
SetCurrentNetworkViewListener, SetCurrentNetworkListener,
+               SessionLoadedListener {
 
-    private static final Logger logger = 
LoggerFactory.getLogger(NetworkViewManager.class);
+       private static final Logger logger = 
LoggerFactory.getLogger(NetworkViewManager.class);
 
-    // TODO Where should we store these property constants?
-    private static final String VIEW_THRESHOLD = "viewThreshold";
-    private static final int DEF_VIEW_THRESHOLD = 10000;
+       // TODO Where should we store these property constants?
+       private static final String VIEW_THRESHOLD = "viewThreshold";
+       private static final int DEF_VIEW_THRESHOLD = 10000;
 
-    private static final int MINIMUM_WIN_WIDTH = 200;
-    private static final int MINIMUM_WIN_HEIGHT = 200;
+       private static final int MINIMUM_WIN_WIDTH = 200;
+       private static final int MINIMUM_WIN_HEIGHT = 200;
 
-    private final JDesktopPane desktopPane;
+       private final JDesktopPane desktopPane;
 
-    // Key is MODEL ID
-    private final Map<Long, JInternalFrame> presentationContainerMap;
-    private final Map<Long, RenderingEngine<CyNetwork>> presentationMap;
+       // Key is MODEL ID
+       private final Map<Long, JInternalFrame> presentationContainerMap;
+       private final Map<Long, RenderingEngine<CyNetwork>> presentationMap;
 
-    private final Map<JInternalFrame, Long> iFrameMap;
-    private final Properties props;
+       private final Map<JInternalFrame, Long> iFrameMap;
+       private final Properties props;
 
-    private Long currentPresentationContainerID;
+       private Long currentPresentationContainerID;
 
-    // Supports multiple presentations
-    private final Map<String, RenderingEngineFactory<CyNetwork>> factories;
-    private RenderingEngineFactory<CyNetwork> currentRenderingEngineFactory;
+       // Supports multiple presentations
+       private final Map<String, RenderingEngineFactory<CyNetwork>> factories;
+       private RenderingEngineFactory<CyNetwork> currentRenderingEngineFactory;
 
-    // TODO: discuss the name and key of props.
-    private static final String ID = "id";
+       // TODO: discuss the name and key of props.
+       private static final String ID = "id";
 
-    // TODO: for now, use this as default. But in the future, we should provide
-    // UI to select presentation.
-    private static final String DEFAULT_PRESENTATION = "ding";
+       // TODO: for now, use this as default. But in the future, we should 
provide
+       // UI to select presentation.
+       private static final String DEFAULT_PRESENTATION = "ding";
 
-    private final Map<CyNetworkView, NetworkViewChangeMicroListener> 
netViewChangeListeners;
-    private final Map<CyNetwork, RowSetMicroListener> nameListeners;
+       private final Map<CyNetworkView, NetworkViewChangeMicroListener> 
netViewChangeListeners;
+       private final Map<CyNetwork, RowSetMicroListener> nameListeners;
 
-    private final CyEventHelper eventHelper;
-    private final CyNetworkViewManager networkViewManager;
-    private final CyApplicationManager applicationManager;
+       private final CyEventHelper eventHelper;
+       private final CyNetworkViewManager networkViewManager;
+       private final CyApplicationManager applicationManager;
 
-    /**
-     * Creates a new NetworkViewManager object.
-     * 
-     * @param desktop
-     *            DOCUMENT ME!
-     */
-    public NetworkViewManager(CyApplicationManager appMgr, 
CyNetworkViewManager netViewMgr,
-           CyProperty<Properties> cyProps, CyHelpBroker help, CyEventHelper 
eventHelper) {
+       /**
+        * Creates a new NetworkViewManager object.
+        * 
+        * @param desktop
+        *            DOCUMENT ME!
+        */
+       public NetworkViewManager(CyApplicationManager appMgr, 
CyNetworkViewManager netViewMgr,
+                       CyProperty<Properties> cyProps, CyHelpBroker help, 
CyEventHelper eventHelper) {
 
-       if (appMgr == null)
-           throw new NullPointerException("CyApplicationManager is null.");
-       if (eventHelper == null)
-           throw new NullPointerException("CyEventHelper is null.");
-       if (netViewMgr == null)
-           throw new NullPointerException("CyNetworkViewManager is null.");
+               if (appMgr == null)
+                       throw new NullPointerException("CyApplicationManager is 
null.");
+               if (eventHelper == null)
+                       throw new NullPointerException("CyEventHelper is 
null.");
+               if (netViewMgr == null)
+                       throw new NullPointerException("CyNetworkViewManager is 
null.");
 
-       this.factories = new HashMap<String, 
RenderingEngineFactory<CyNetwork>>();
+               this.factories = new HashMap<String, 
RenderingEngineFactory<CyNetwork>>();
 
-       this.networkViewManager = netViewMgr;
-       this.applicationManager = appMgr;
-       this.props = cyProps.getProperties();
-       this.eventHelper = eventHelper;
+               this.networkViewManager = netViewMgr;
+               this.applicationManager = appMgr;
+               this.props = cyProps.getProperties();
+               this.eventHelper = eventHelper;
 
-       this.desktopPane = new JDesktopPane();
+               this.desktopPane = new JDesktopPane();
 
-       // add Help hooks
-       help.getHelpBroker().enableHelp(desktopPane, "network-view-manager", 
null);
+               // add Help hooks
+               help.getHelpBroker().enableHelp(desktopPane, 
"network-view-manager", null);
 
-       presentationContainerMap = new HashMap<Long, JInternalFrame>();
-       presentationMap = new HashMap<Long, RenderingEngine<CyNetwork>>();
-       iFrameMap = new HashMap<JInternalFrame, Long>();
-       currentPresentationContainerID = null;
+               presentationContainerMap = new HashMap<Long, JInternalFrame>();
+               presentationMap = new HashMap<Long, 
RenderingEngine<CyNetwork>>();
+               iFrameMap = new HashMap<JInternalFrame, Long>();
+               currentPresentationContainerID = null;
 
-       netViewChangeListeners = new HashMap<CyNetworkView, 
NetworkViewChangeMicroListener>();
-       nameListeners = new HashMap<CyNetwork, RowSetMicroListener>();
-    }
+               netViewChangeListeners = new HashMap<CyNetworkView, 
NetworkViewChangeMicroListener>();
+               nameListeners = new HashMap<CyNetwork, RowSetMicroListener>();
+       }
 
-    /**
-     * Dynamically add rendering engine factories. Will be used by Spring DM.
-     * 
-     * @param factory
-     * @param props
-     */
-    public void addPresentationFactory(RenderingEngineFactory<CyNetwork> 
factory,
-           @SuppressWarnings("rawtypes") Map props) {
-       logger.info("Adding New Rendering Engine Factory...");
+       /**
+        * Dynamically add rendering engine factories. Will be used by Spring 
DM.
+        * 
+        * @param factory
+        * @param props
+        */
+       public void addPresentationFactory(RenderingEngineFactory<CyNetwork> 
factory,
+                       @SuppressWarnings("rawtypes") Map props) {
+               logger.info("Adding New Rendering Engine Factory...");
 
-       Object rendererID = props.get(ID);
-       if (rendererID == null)
-           throw new IllegalArgumentException("Renderer ID is null.");
+               Object rendererID = props.get(ID);
+               if (rendererID == null)
+                       throw new IllegalArgumentException("Renderer ID is 
null.");
 
-       factories.put(rendererID.toString(), factory);
-       if (currentRenderingEngineFactory == null && 
rendererID.equals(DEFAULT_PRESENTATION)) {
-           currentRenderingEngineFactory = factory;
-           logger.info(rendererID + " is registered as the default rendering 
engine.");
+               factories.put(rendererID.toString(), factory);
+               if (currentRenderingEngineFactory == null && 
rendererID.equals(DEFAULT_PRESENTATION)) {
+                       currentRenderingEngineFactory = factory;
+                       logger.info(rendererID + " is registered as the default 
rendering engine.");
+               }
+
+               logger.info("New Rendering Engine is Available: " + rendererID);
        }
 
-       logger.info("New Rendering Engine is Available: " + rendererID);
-    }
+       public void removePresentationFactory(RenderingEngineFactory<CyNetwork> 
factory,
+                       @SuppressWarnings("rawtypes") Map props) {
+               factories.remove(props.get(ID));
+       }
 
-    public void removePresentationFactory(RenderingEngineFactory<CyNetwork> 
factory,
-           @SuppressWarnings("rawtypes") Map props) {
-       factories.remove(props.get(ID));
-    }
+       /**
+        * Desktop for JInternalFrames which contains actual network 
presentations.
+        * 
+        * @return DOCUMENT ME!
+        */
+       public JDesktopPane getDesktopPane() {
+               return desktopPane;
+       }
 
-    /**
-     * Desktop for JInternalFrames which contains actual network presentations.
-     * 
-     * @return DOCUMENT ME!
-     */
-    public JDesktopPane getDesktopPane() {
-       return desktopPane;
-    }
+       /**
+        * Given a CyNetworkView, returns the internal frame.
+        * 
+        * @param view
+        *            CyNetworkView
+        * @return JInternalFrame
+        * @throws IllegalArgumentException
+        */
+       public JInternalFrame getInternalFrame(CyNetworkView view) throws 
IllegalArgumentException {
+               // check args
+               if (view == null) {
+                       throw new 
IllegalArgumentException("NetworkViewManager.getInternalFrame(), argument is 
null");
+               }
 
-    /**
-     * Given a CyNetworkView, returns the internal frame.
-     * 
-     * @param view
-     *            CyNetworkView
-     * @return JInternalFrame
-     * @throws IllegalArgumentException
-     */
-    public JInternalFrame getInternalFrame(CyNetworkView view) throws 
IllegalArgumentException {
-       // check args
-       if (view == null) {
-           throw new 
IllegalArgumentException("NetworkViewManager.getInternalFrame(), argument is 
null");
+               // outta here
+               return presentationContainerMap.get(view.getModel().getSUID());
        }
 
-       // outta here
-       return presentationContainerMap.get(view.getModel().getSUID());
-    }
+       /**
+        * View switched
+        */
+       public void internalFrameActivated(InternalFrameEvent e) {
+               final Long networkId = iFrameMap.get(e.getInternalFrame());
+               if (networkId == null)
+                       return;
 
-    /**
-     * View switched
-     */
-    public void internalFrameActivated(InternalFrameEvent e) {
-       final Long networkId = iFrameMap.get(e.getInternalFrame());
-       if (networkId == null)
-           return;
+               final RenderingEngine<CyNetwork> currentEngine = 
applicationManager.getCurrentRenderingEngine();
+               applicationManager.setCurrentNetworkView(networkId);
 
-       final RenderingEngine<CyNetwork> currentEngine = 
applicationManager.getCurrentRenderingEngine();
-       applicationManager.setCurrentNetworkView(networkId);
+               if (currentEngine == null || 
currentEngine.getViewModel().getModel().getSUID() != networkId)
+                       
applicationManager.setCurrentRenderingEngine(presentationMap.get(networkId));
+       }
 
-       if (currentEngine == null || 
currentEngine.getViewModel().getModel().getSUID() != networkId)
-           
applicationManager.setCurrentRenderingEngine(presentationMap.get(networkId));
-    }
+       /**
+        * Fire Events when a Managed Network View gets the Focus.
+        */
+       @Override
+       public void internalFrameOpened(InternalFrameEvent e) {
+               internalFrameActivated(e);
+       }
 
-    /**
-     * Fire Events when a Managed Network View gets the Focus.
-     */
-    @Override
-    public void internalFrameOpened(InternalFrameEvent e) {
-       internalFrameActivated(e);
-    }
+       // // Event Handlers ////
+       public void handleEvent(SetCurrentNetworkViewEvent e) {
+               if (e.getNetworkView() == null) {
+                       logger.info("Attempting to set current network view 
model: null view ");
+                       return;
+               }
 
-    // // Event Handlers ////
-    public void handleEvent(SetCurrentNetworkViewEvent e) {
-       if (e.getNetworkView() == null) {
-           logger.info("Attempting to set current network view model: null 
view ");
-           return;
+               logger.info("Attempting to set current network view model: View 
Model ID = " + e.getNetworkView().getSUID());
+               setFocus(e.getNetworkView().getModel().getSUID());
        }
 
-       logger.info("Attempting to set current network view model: View Model 
ID = " + e.getNetworkView().getSUID());
-       setFocus(e.getNetworkView().getModel().getSUID());
-    }
+       public void handleEvent(SetCurrentNetworkEvent e) {
+               if (e.getNetwork() == null) {
+                       logger.info("Attempting to set current network : null 
network ");
+                       return;
+               }
 
-    public void handleEvent(SetCurrentNetworkEvent e) {
-       if (e.getNetwork() == null) {
-           logger.info("Attempting to set current network : null network ");
-           return;
+               logger.info("Attempting to set current network model: Model ID 
= " + e.getNetwork().getSUID());
+               setFocus(e.getNetwork().getSUID());
        }
 
-       logger.info("Attempting to set current network model: Model ID = " + 
e.getNetwork().getSUID());
-       setFocus(e.getNetwork().getSUID());
-    }
+       public void handleEvent(NetworkViewAboutToBeDestroyedEvent nvde) {
+               logger.info("Network view destroyed: View ID = " + 
nvde.getNetworkView());
+               removeView(nvde.getNetworkView());
+       }
 
-    public void handleEvent(NetworkViewAboutToBeDestroyedEvent nvde) {
-       logger.info("Network view destroyed: View ID = " + 
nvde.getNetworkView());
-       removeView(nvde.getNetworkView());
-    }
+       /**
+        * Adding new network view model to this manager. Then, render 
presentation.
+        */
+       public void handleEvent(final NetworkViewAddedEvent nvae) {
 
-    /**
-     * Adding new network view model to this manager. Then, render 
presentation.
-     */
-    public void handleEvent(final NetworkViewAddedEvent nvae) {
+               logger.info("\n\n\nView Manager got Network view added event.  
Adding view to manager: NetworkViewManager: View ID = "
+                               + nvae.getNetworkView().getSUID() + "\n\n\n");
 
-       logger.info("\n\n\nView Manager got Network view added event.  Adding 
view to manager: NetworkViewManager: View ID = "
-               + nvae.getNetworkView().getSUID() + "\n\n\n");
+               final String viewThresholdString = 
props.getProperty(VIEW_THRESHOLD);
+               int viewThreshold;
+               try {
+                       viewThreshold = Integer.parseInt(viewThresholdString);
+               } catch (Exception e) {
+                       viewThreshold = DEF_VIEW_THRESHOLD;
+                       logger.warn("Could not parse view threshold property.  
Use default value: " + DEF_VIEW_THRESHOLD);
+               }
 
-       final String viewThresholdString = props.getProperty(VIEW_THRESHOLD);
-       int viewThreshold;
-       try {
-           viewThreshold = Integer.parseInt(viewThresholdString);
-       } catch (Exception e) {
-           viewThreshold = DEF_VIEW_THRESHOLD;
-           logger.warn("Could not parse view threshold property.  Use default 
value: " + DEF_VIEW_THRESHOLD);
-       }
+               CyNetworkView networkView = nvae.getNetworkView();
+               final CyNetwork model = networkView.getModel();
+               final int graphObjectCount = model.getNodeCount() + 
model.getEdgeCount();
 
-       CyNetworkView networkView = nvae.getNetworkView();
-       final CyNetwork model = networkView.getModel();
-       final int graphObjectCount = model.getNodeCount() + 
model.getEdgeCount();
+               // Render only when graph size is smaller than threshold.
+               if (graphObjectCount > viewThreshold) {
+                       int createFlag = JOptionPane
+                                       .showConfirmDialog(
+                                                       null,
+                                                       "Network contains "
+                                                                       + 
graphObjectCount
+                                                                       + " 
objects.\nDo you still want to create visualization?\nThis is not recommended 
for machines with small amount of memory.",
+                                                       "Large Network Data 
Loaded", JOptionPane.YES_NO_OPTION, JOptionPane.WARNING_MESSAGE);
+                       if (createFlag == JOptionPane.NO_OPTION) {
+                               
networkViewManager.destroyNetworkView(networkView);
+                               networkView = null;
+                               return;
+                       }
+               }
 
-       // Render only when graph size is smaller than threshold.
-       if (graphObjectCount > viewThreshold) {
-           int createFlag = JOptionPane
-                   .showConfirmDialog(
-                           null,
-                           "Network contains "
-                                   + graphObjectCount
-                                   + " objects.\nDo you still want to create 
visualization?\nThis is not recommended for machines with small amount of 
memory.",
-                           "Large Network Data Loaded", 
JOptionPane.YES_NO_OPTION, JOptionPane.WARNING_MESSAGE);
-           if (createFlag == JOptionPane.NO_OPTION) {
-               networkViewManager.destroyNetworkView(networkView);
-               networkView = null;
-               return;
-           }
+               render(nvae.getNetworkView());
        }
 
-       render(nvae.getNetworkView());
-    }
+       protected void removeView(CyNetworkView view) {
+               try {
+                       final JInternalFrame frame = 
presentationContainerMap.get(view.getModel().getSUID());
+                       if (frame != null) {
+                               RenderingEngine<CyNetwork> removed = 
this.presentationMap.remove(view.getModel().getSUID());
+                               logger.debug("#### Removing rendering engine: " 
+ removed);
+                               removed = null;
+                               frame.dispose();
+                       }
+               } catch (Exception e) {
+                       logger.error("Network View unable to be killed", e);
+               }
 
-    protected void removeView(CyNetworkView view) {
-       try {
-           final JInternalFrame frame = 
presentationContainerMap.get(view.getModel().getSUID());
-           if (frame != null) {
-               RenderingEngine<CyNetwork> removed = 
this.presentationMap.remove(view.getModel().getSUID());
-               logger.debug("#### Removing rendering engine: " + removed);
-               removed = null;
-               frame.dispose();
-           }
-       } catch (Exception e) {
-           logger.error("Network View unable to be killed", e);
-       }
+               presentationContainerMap.remove(view.getModel().getSUID());
 
-       presentationContainerMap.remove(view.getModel().getSUID());
+               NetworkViewChangeMicroListener nvcml = 
netViewChangeListeners.remove(view);
+               if (nvcml != null)
+                       eventHelper.removeMicroListener(nvcml, 
NetworkViewChangeMicroListener.class, view);
 
-       NetworkViewChangeMicroListener nvcml = 
netViewChangeListeners.remove(view);
-       if (nvcml != null)
-           eventHelper.removeMicroListener(nvcml, 
NetworkViewChangeMicroListener.class, view);
+               RowSetMicroListener rsml = 
nameListeners.remove(view.getModel());
+               if (rsml != null)
+                       eventHelper.removeMicroListener(rsml, 
RowSetMicroListener.class, view.getModel().getCyRow().getTable());
 
-       RowSetMicroListener rsml = nameListeners.remove(view.getModel());
-       if (rsml != null)
-           eventHelper.removeMicroListener(rsml, RowSetMicroListener.class, 
view.getModel().getCyRow().getTable());
+               logger.debug("Network View Model removed.");
+       }
 
-       logger.debug("Network View Model removed.");
-    }
+       /**
+        * Create a visualization container and add presentation to it.
+        * 
+        */
+       private void render(final CyNetworkView view) {
+               final Long modelID = view.getModel().getSUID();
 
-    /**
-     * Create a visualization container and add presentation to it.
-     * 
-     */
-    private void render(final CyNetworkView view) {
-       final Long modelID = view.getModel().getSUID();
+               // If already registered in this manager, do not render.
+               if (presentationContainerMap.containsKey(modelID))
+                       return;
 
-       // If already registered in this manager, do not render.
-       if (presentationContainerMap.containsKey(modelID))
-           return;
+               // Create a new InternalFrame and put the CyNetworkView 
Component into
+               // it
+               final String title = 
view.getModel().getCyRow().get(CyTableEntry.NAME, String.class);
+               final JInternalFrame iframe = new JInternalFrame(title, true, 
true, true, true);
 
-       // Create a new InternalFrame and put the CyNetworkView Component into
-       // it
-       final String title = view.getModel().getCyRow().get(CyTableEntry.NAME, 
String.class);
-       final JInternalFrame iframe = new JInternalFrame(title, true, true, 
true, true);
+               iframe.addInternalFrameListener(new InternalFrameAdapter() {
+                       public void internalFrameClosing(InternalFrameEvent e) {
+                               networkViewManager.destroyNetworkView(view);
 
-       iframe.addInternalFrameListener(new InternalFrameAdapter() {
-           public void internalFrameClosing(InternalFrameEvent e) {
-               networkViewManager.destroyNetworkView(view);
+                               Component[] components = iframe.getComponents();
+                               for (Component cp : components) {
+                                       logger.debug("Removing: " + cp);
+                                       cp = null;
+                               }
+                               components = null;
 
-               Component[] components = iframe.getComponents();
-               for (Component cp : components) {
-                   logger.debug("Removing: " + cp);
-                   cp = null;
-               }
-               components = null;
+                       }
+               });
 
-           }
-       });
+               desktopPane.add(iframe);
+               presentationContainerMap.put(modelID, iframe);
+               iFrameMap.put(iframe, modelID);
 
-       desktopPane.add(iframe);
-       presentationContainerMap.put(modelID, iframe);
-       iFrameMap.put(iframe, modelID);
+               final long start = System.currentTimeMillis();
+               logger.debug("Rendering start: view model = " + view.getSUID());
+               final RenderingEngine<CyNetwork> renderingEngine = 
currentRenderingEngineFactory.getInstance(iframe, view);
+               logger.debug("Rendering finished in " + 
(System.currentTimeMillis() - start) + " m sec.");
+               presentationMap.put(modelID, renderingEngine);
 
-       final long start = System.currentTimeMillis();
-       logger.debug("Rendering start: view model = " + view.getSUID());
-       final RenderingEngine<CyNetwork> renderingEngine = 
currentRenderingEngineFactory.getInstance(iframe, view);
-       logger.debug("Rendering finished in " + (System.currentTimeMillis() - 
start) + " m sec.");
-       presentationMap.put(modelID, renderingEngine);
+               iframe.pack();
 
-       iframe.pack();
+               // create cascade iframe
+               int x = 0;
+               int y = 0;
+               JInternalFrame refFrame = null;
+               JInternalFrame[] allFrames = desktopPane.getAllFrames();
 
-       // create cascade iframe
-       int x = 0;
-       int y = 0;
-       JInternalFrame refFrame = null;
-       JInternalFrame[] allFrames = desktopPane.getAllFrames();
+               // frame Location
+               if (allFrames.length > 1)
+                       refFrame = allFrames[0];
 
-       // frame Location
-       if (allFrames.length > 1)
-           refFrame = allFrames[0];
+               if (refFrame != null) {
+                       x = refFrame.getLocation().x + 20;
+                       y = refFrame.getLocation().y + 20;
+               }
 
-       if (refFrame != null) {
-           x = refFrame.getLocation().x + 20;
-           y = refFrame.getLocation().y + 20;
-       }
+               if (x > (desktopPane.getWidth() - MINIMUM_WIN_WIDTH))
+                       x = desktopPane.getWidth() - MINIMUM_WIN_WIDTH;
+               if (y > (desktopPane.getHeight() - MINIMUM_WIN_HEIGHT))
+                       y = desktopPane.getHeight() - MINIMUM_WIN_HEIGHT;
+               if (x < 0)
+                       x = 0;
+               if (y < 0)
+                       y = 0;
 
-       if (x > (desktopPane.getWidth() - MINIMUM_WIN_WIDTH))
-           x = desktopPane.getWidth() - MINIMUM_WIN_WIDTH;
-       if (y > (desktopPane.getHeight() - MINIMUM_WIN_HEIGHT))
-           y = desktopPane.getHeight() - MINIMUM_WIN_HEIGHT;
-       if (x < 0)
-           x = 0;
-       if (y < 0)
-           y = 0;
+               iframe.setLocation(x, y);
 
-       iframe.setLocation(x, y);
+               // maximize the frame if the specified property is set
 
-       // maximize the frame if the specified property is set
+               final String max = props.getProperty("maximizeViewOnCreate");
 
-       final String max = props.getProperty("maximizeViewOnCreate");
+               if ((max != null) && Boolean.parseBoolean(max)) {
+                       try {
+                               iframe.setMaximum(true);
+                       } catch (PropertyVetoException pve) {
+                               logger.warn("Could not maximize frame.", pve);
+                       }
+               } else {
+                       int w = 
view.getVisualProperty(MinimalVisualLexicon.NETWORK_WIDTH).intValue();
+                       int h = 
view.getVisualProperty(MinimalVisualLexicon.NETWORK_HEIGHT).intValue();
+                       updateNetworkSize(modelID, w, h);
+               }
 
-       if ((max != null) && Boolean.parseBoolean(max)) {
-           try {
-               iframe.setMaximum(true);
-           } catch (PropertyVetoException pve) {
-               logger.warn("Could not maximize frame.", pve);
-           }
-       } else {
-           int w = 
view.getVisualProperty(MinimalVisualLexicon.NETWORK_WIDTH).intValue();
-           int h = 
view.getVisualProperty(MinimalVisualLexicon.NETWORK_HEIGHT).intValue();
-           updateNetworkSize(modelID, w, h);
-       }
+               // Display it and add listeners
+               iframe.setVisible(true);
+               iframe.addInternalFrameListener(this);
 
-       // Display it and add listeners
-       iframe.setVisible(true);
-       iframe.addInternalFrameListener(this);
+               NetworkViewChangeMicroListener nvcml = new 
NetworkViewChangeMicroListener() {
+                       @Override
+                       public void networkVisualPropertySet(View<CyNetwork> 
target, VisualProperty<?> vp, Object value) {
+                               Long id = target.getModel().getSUID();
 
-       NetworkViewChangeMicroListener nvcml = new 
NetworkViewChangeMicroListener() {
-           @Override
-           public void networkVisualPropertySet(View<CyNetwork> target, 
VisualProperty<?> vp, Object value) {
-               Long id = target.getModel().getSUID();
+                               if 
(vp.equals(MinimalVisualLexicon.NETWORK_WIDTH)) {
+                                       int w = ((Double) value).intValue();
+                                       int h = iframe.getSize().height;
+                                       updateNetworkSize(id, w, h);
+                               } else if 
(vp.equals(MinimalVisualLexicon.NETWORK_HEIGHT)) {
+                                       int w = iframe.getSize().width;
+                                       int h = ((Double) value).intValue();
+                                       updateNetworkSize(id, w, h);
+                               }
+                       }
+               };
 
-               if (vp.equals(MinimalVisualLexicon.NETWORK_WIDTH)) {
-                   int w = ((Double) value).intValue();
-                   int h = iframe.getSize().height;
-                   updateNetworkSize(id, w, h);
-               } else if (vp.equals(MinimalVisualLexicon.NETWORK_HEIGHT)) {
-                   int w = iframe.getSize().width;
-                   int h = ((Double) value).intValue();
-                   updateNetworkSize(id, w, h);
-               }
-           }
-       };
+               eventHelper.addMicroListener(nvcml, 
NetworkViewChangeMicroListener.class, view);
+               netViewChangeListeners.put(view, nvcml);
 
-       eventHelper.addMicroListener(nvcml, 
NetworkViewChangeMicroListener.class, view);
-       netViewChangeListeners.put(view, nvcml);
+               RowSetMicroListener rsml = new 
AbstractNetworkNameListener(view.getModel()) {
+                       @Override
+                       public void updateNetworkName(CyNetwork net, String 
name) {
+                               final String title = 
net.getCyRow().get(CyTableEntry.NAME, String.class);
+                               updateNetworkTitle(net.getSUID(), title);
+                       }
+               };
 
-       RowSetMicroListener rsml = new 
AbstractNetworkNameListener(view.getModel()) {
-           @Override
-           public void updateNetworkName(CyNetwork net, String name) {
-               final String title = net.getCyRow().get(CyTableEntry.NAME, 
String.class);
-               updateNetworkTitle(net.getSUID(), title);
-           }
-       };
+               eventHelper.addMicroListener(rsml, RowSetMicroListener.class, 
view.getModel().getCyRow());
+               nameListeners.put(view.getModel(), rsml);
+       }
 
-       eventHelper.addMicroListener(rsml, RowSetMicroListener.class, 
view.getModel().getCyRow());
-       nameListeners.put(view.getModel(), rsml);
-    }
+       @Override
+       public void handleEvent(SessionLoadedEvent e) {
+               CySession sess = e.getLoadedSession();
 
-    @Override
-    public void handleEvent(SessionLoadedEvent e) {
-       CySession sess = e.getLoadedSession();
+               if (sess != null) {
+                       Cysession cs = sess.getCysession();
 
-       if (sess != null) {
-           Cysession cs = sess.getCysession();
+                       if (cs != null) {
+                               // Restore frames positions
+                               if 
(cs.getSessionState().getDesktop().getNetworkFrames() != null) {
+                                       List<NetworkFrame> frames = 
cs.getSessionState().getDesktop().getNetworkFrames().getNetworkFrame();
 
-           if (cs != null) {
-               // Restore frames positions
-               if (cs.getSessionState().getDesktop().getNetworkFrames() != 
null) {
-                   List<NetworkFrame> frames = 
cs.getSessionState().getDesktop().getNetworkFrames().getNetworkFrame();
+                                       for (NetworkFrame nf : frames) {
+                                               String frameName = 
nf.getFrameID();
+                                               JInternalFrame[] internalFrames 
= desktopPane.getAllFrames();
 
-                   for (NetworkFrame nf : frames) {
-                       String frameName = nf.getFrameID();
-                       JInternalFrame[] internalFrames = 
desktopPane.getAllFrames();
+                                               for (JInternalFrame iframe : 
internalFrames) {
+                                                       if (iframe.getTitle() 
!= null && iframe.getTitle().equals(frameName) && nf.getX() != null
+                                                                       && 
nf.getY() != null) {
 
-                       for (JInternalFrame iframe : internalFrames) {
-                           if (iframe.getTitle() != null && 
iframe.getTitle().equals(frameName) && nf.getX() != null
-                                   && nf.getY() != null) {
-
-                               int x = nf.getX().intValue();
-                               int y = nf.getY().intValue();
-                               iframe.setLocation(x, y);
-                           }
+                                                               int x = 
nf.getX().intValue();
+                                                               int y = 
nf.getY().intValue();
+                                                               
iframe.setLocation(x, y);
+                                                       }
+                                               }
+                                       }
+                               }
                        }
-                   }
                }
-           }
        }
-    }
 
-    private void updateNetworkTitle(Long networkModelID, String title) {
-       JInternalFrame frame = presentationContainerMap.get(networkModelID);
+       private void updateNetworkTitle(Long networkModelID, String title) {
+               JInternalFrame frame = 
presentationContainerMap.get(networkModelID);
 
-       if (frame != null) {
-           frame.setTitle(title);
-           frame.repaint();
+               if (frame != null) {
+                       frame.setTitle(title);
+                       frame.repaint();
+               }
        }
-    }
 
-    private void updateNetworkSize(final Long networkModelID, int width, int 
height) {
-       final JInternalFrame frame = 
presentationContainerMap.get(networkModelID);
+       private void updateNetworkSize(final Long networkModelID, int width, 
int height) {
+               final JInternalFrame frame = 
presentationContainerMap.get(networkModelID);
 
-       if (frame == null)
-           return;
+               if (frame == null)
+                       return;
 
-       if (width > 0 && height > 0)
-           frame.setSize(new Dimension(width, height));
-    }
-
-    private void setFocus(Long networkModelID) {
-       if (networkModelID == null) {
-           logger.warn("Set Focus method got a null as target ID.");
-           return;
+               if (width > 0 && height > 0)
+                       frame.setSize(new Dimension(width, height));
        }
 
-       final CyNetworkView targetViewModel = 
networkViewManager.getNetworkView(networkModelID);
-       if (targetViewModel == null) {
-           logger.debug("View model does not exist for model ID: " + 
networkModelID);
-           return;
-       }
+       private void setFocus(Long networkModelID) {
+               if (networkModelID == null) {
+                       logger.warn("Set Focus method got a null as target 
ID.");
+                       return;
+               }
 
-       // make sure we're not redundant
-       if (currentPresentationContainerID != null && 
currentPresentationContainerID.equals(networkModelID)) {
-           logger.debug("Same as current focus.  No need to update focus: 
model ID = " + networkModelID);
-           return;
-       }
+               final CyNetworkView targetViewModel = 
networkViewManager.getNetworkView(networkModelID);
+               if (targetViewModel == null) {
+                       logger.debug("View model does not exist for model ID: " 
+ networkModelID);
+                       return;
+               }
 
-       currentPresentationContainerID = networkModelID;
+               // make sure we're not redundant
+               if (currentPresentationContainerID != null && 
currentPresentationContainerID.equals(networkModelID)) {
+                       logger.debug("Same as current focus.  No need to update 
focus: model ID = " + networkModelID);
+                       return;
+               }
 
-       // Reset focus on frames
-       for (JInternalFrame f : presentationContainerMap.values()) {
-           try {
-               f.setSelected(false);
-           } catch (PropertyVetoException pve) {
-               logger.error("Couldn't reset focus for internal frames.", pve);
-           }
-       }
+               currentPresentationContainerID = networkModelID;
 
-       // Set focus
-       if (presentationContainerMap.containsKey(networkModelID)) {
-           try {
-               logger.debug("Updating JInternalFrame selection");
-               final JInternalFrame curr = 
presentationContainerMap.get(networkModelID);
+               // Reset focus on frames
+               for (JInternalFrame f : presentationContainerMap.values()) {
+                       try {
+                               f.setSelected(false);
+                       } catch (PropertyVetoException pve) {
+                               logger.error("Couldn't reset focus for internal 
frames.", pve);
+                       }
+               }
 
-               curr.setIcon(false);
-               curr.show();
-               // fires internalFrameActivated
-               curr.setSelected(true);
+               // Set focus
+               if (presentationContainerMap.containsKey(networkModelID)) {
+                       try {
+                               logger.debug("Updating JInternalFrame 
selection");
+                               final JInternalFrame curr = 
presentationContainerMap.get(networkModelID);
 
-           } catch (Exception ex) {
-               logger.error("Could not update focus: ", ex);
-           }
-       } else {
-           logger.debug("Frame was not found. Need to create new frame for 
presentation.");
+                               curr.setIcon(false);
+                               curr.show();
+                               // fires internalFrameActivated
+                               curr.setSelected(true);
+
+                       } catch (Exception ex) {
+                               logger.error("Could not update focus: ", ex);
+                       }
+               } else {
+                       logger.debug("Frame was not found. Need to create new 
frame for presentation.");
+               }
        }
-    }
 }

-- 
You received this message because you are subscribed to the Google Groups 
"cytoscape-cvs" group.
To post to this group, send email to [email protected].
To unsubscribe from this group, send email to 
[email protected].
For more options, visit this group at 
http://groups.google.com/group/cytoscape-cvs?hl=en.

Reply via email to