Author: ruschein
Date: 2011-05-10 15:55:47 -0700 (Tue, 10 May 2011)
New Revision: 25005
Added:
csplugins/trunk/ucsd/ruschein/SimpleCytoscape3Plugin/MenuAction.java
csplugins/trunk/ucsd/ruschein/SimpleCytoscape3Plugin/SamplePlugin.java
Removed:
csplugins/trunk/ucsd/ruschein/SimpleCytoscape3Plugin/org/
Modified:
csplugins/trunk/ucsd/ruschein/SimpleCytoscape3Plugin/META-INF/MANIFEST.MF
Log:
Removed package names in order to simplify the example.
Modified:
csplugins/trunk/ucsd/ruschein/SimpleCytoscape3Plugin/META-INF/MANIFEST.MF
===================================================================
--- csplugins/trunk/ucsd/ruschein/SimpleCytoscape3Plugin/META-INF/MANIFEST.MF
2011-05-10 22:28:20 UTC (rev 25004)
+++ csplugins/trunk/ucsd/ruschein/SimpleCytoscape3Plugin/META-INF/MANIFEST.MF
2011-05-10 22:55:47 UTC (rev 25005)
@@ -1 +1 @@
-Cytoscape-Plugin: org.cytoscape.plugin.example.SamplePlugin
+Cytoscape-Plugin: SamplePlugin
Copied: csplugins/trunk/ucsd/ruschein/SimpleCytoscape3Plugin/MenuAction.java
(from rev 25003,
csplugins/trunk/ucsd/ruschein/SimpleCytoscape3Plugin/org/cytoscape/plugin/example/MenuAction.java)
===================================================================
--- csplugins/trunk/ucsd/ruschein/SimpleCytoscape3Plugin/MenuAction.java
(rev 0)
+++ csplugins/trunk/ucsd/ruschein/SimpleCytoscape3Plugin/MenuAction.java
2011-05-10 22:55:47 UTC (rev 25005)
@@ -0,0 +1,39 @@
+import java.awt.event.ActionEvent;
+import org.cytoscape.application.swing.AbstractCyAction;
+import org.cytoscape.model.CyEdge;
+import org.cytoscape.model.CyNetwork;
+import org.cytoscape.model.CyNode;
+import org.cytoscape.plugin.CyPluginAdapter;
+import org.cytoscape.view.model.CyNetworkView;
+import static
org.cytoscape.view.presentation.property.MinimalVisualLexicon.NODE_VISIBLE;
+
+
+public class MenuAction extends AbstractCyAction {
+ private final CyPluginAdapter adapter;
+
+ public MenuAction(CyPluginAdapter adapter) {
+ super("Hide unconnected nodes",
adapter.getCyApplicationManager());
+ this.adapter = adapter;
+ setPreferredMenu("Select");
+ }
+
+ public void actionPerformed(ActionEvent e) {
+System.err.println("+++++++++++++++++++++++++++++++++ Entering
actionPerformed()");
+ final CyNetwork currentNetwork =
adapter.getCyApplicationManager().getCurrentNetwork();
+ if (currentNetwork == null)
+ return;
+
+ final CyNetworkView currentNetworkView =
adapter.getCyApplicationManager().getCurrentNetworkView();
+
+ for (CyNode node : currentNetwork.getNodeList()) {
+ if (currentNetwork.getNeighborList(node,
CyEdge.Type.ANY).isEmpty())
+ {
+System.err.println("+++++++++++++++++++++++++++++++++ found one");
+
currentNetworkView.getNodeView(node).setVisualProperty(NODE_VISIBLE, false);
+ }
+ }
+
+System.err.println("+++++++++++++++++++++++++++++++++ about to call
updateView()");
+ currentNetworkView.updateView();
+ }
+}
Copied: csplugins/trunk/ucsd/ruschein/SimpleCytoscape3Plugin/SamplePlugin.java
(from rev 25003,
csplugins/trunk/ucsd/ruschein/SimpleCytoscape3Plugin/org/cytoscape/plugin/example/SamplePlugin.java)
===================================================================
--- csplugins/trunk/ucsd/ruschein/SimpleCytoscape3Plugin/SamplePlugin.java
(rev 0)
+++ csplugins/trunk/ucsd/ruschein/SimpleCytoscape3Plugin/SamplePlugin.java
2011-05-10 22:55:47 UTC (rev 25005)
@@ -0,0 +1,10 @@
+import org.cytoscape.plugin.CyPluginAdapter;
+import org.cytoscape.plugin.CyPlugin;
+
+
+public class SamplePlugin extends CyPlugin {
+ public SamplePlugin(CyPluginAdapter a){
+ super(a);
+ a.getCySwingApplication().addAction(new MenuAction(a));
+ }
+}
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