Author: kono
Date: 2011-05-12 12:48:20 -0700 (Thu, 12 May 2011)
New Revision: 25028
Modified:
csplugins/trunk/ucsd/kono/cy3-simple-plugin/src/main/java/org/cytoscape/myplugin/internal/MenuAction.java
csplugins/trunk/ucsd/kono/cy3-simple-plugin/src/main/resources/META-INF/spring/bundle-context-osgi.xml
csplugins/trunk/ucsd/kono/cy3-simple-plugin/src/main/resources/META-INF/spring/bundle-context.xml
Log:
Working version of sample plugin for tutorial.
Modified:
csplugins/trunk/ucsd/kono/cy3-simple-plugin/src/main/java/org/cytoscape/myplugin/internal/MenuAction.java
===================================================================
---
csplugins/trunk/ucsd/kono/cy3-simple-plugin/src/main/java/org/cytoscape/myplugin/internal/MenuAction.java
2011-05-12 19:03:59 UTC (rev 25027)
+++
csplugins/trunk/ucsd/kono/cy3-simple-plugin/src/main/java/org/cytoscape/myplugin/internal/MenuAction.java
2011-05-12 19:48:20 UTC (rev 25028)
@@ -15,21 +15,21 @@
private static final long serialVersionUID = -7457271379655577597L;
public MenuAction(final CyApplicationManager applicationManager) {
- super("Hide unconnected nodes", applicationManager);
+ super("Hide unconnected nodes (OSGi bundle version)",
applicationManager);
setPreferredMenu("Select");
}
public void actionPerformed(ActionEvent e) {
- final CyNetwork currentNetwork = this.applicationManager
- .getCurrentNetwork();
- if (currentNetwork == null)
+
+ final CyNetworkView currentNetworkView =
applicationManager.getCurrentNetworkView();
+ if(currentNetworkView == null)
return;
-
- final CyNetworkView currentNetworkView = applicationManager
- .getCurrentNetworkView();
-
- for (CyNode node : currentNetwork.getNodeList()) {
- if (currentNetwork.getNeighborList(node,
CyEdge.Type.ANY).isEmpty())
+
+ // View is always associated with its model.
+ final CyNetwork network = currentNetworkView.getModel();
+
+ for (CyNode node : network.getNodeList()) {
+ if (network.getNeighborList(node,
CyEdge.Type.ANY).isEmpty())
currentNetworkView.getNodeView(node).setVisualProperty(
MinimalVisualLexicon.NODE_VISIBLE, false);
}
Modified:
csplugins/trunk/ucsd/kono/cy3-simple-plugin/src/main/resources/META-INF/spring/bundle-context-osgi.xml
===================================================================
---
csplugins/trunk/ucsd/kono/cy3-simple-plugin/src/main/resources/META-INF/spring/bundle-context-osgi.xml
2011-05-12 19:03:59 UTC (rev 25027)
+++
csplugins/trunk/ucsd/kono/cy3-simple-plugin/src/main/resources/META-INF/spring/bundle-context-osgi.xml
2011-05-12 19:48:20 UTC (rev 25028)
@@ -1,7 +1,6 @@
<?xml version="1.0" encoding="UTF-8"?>
<beans xmlns="http://www.springframework.org/schema/beans";
- xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance";
- xmlns:osgi="http://www.springframework.org/schema/osgi";
+ xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance";
xmlns:osgi="http://www.springframework.org/schema/osgi";
xsi:schemaLocation="
http://www.springframework.org/schema/beans
http://www.springframework.org/schema/beans/spring-beans-2.5.xsd
@@ -10,4 +9,18 @@
default-lazy-init="false">
+ <!-- ================= Import =========================== -->
+
+ <!-- Import OSGi service from service registry -->
+ <osgi:reference id="cyApplicationManagerServiceRef"
+ interface="org.cytoscape.session.CyApplicationManager" />
+
+
+ <!-- ================= Export =========================== -->
+
+ <!-- Export the instance as an OSGi service -->
+ <osgi:service id="menuActionService" ref="menuAction"
+ interface="org.cytoscape.application.swing.CyAction" />
+
+
</beans>
Modified:
csplugins/trunk/ucsd/kono/cy3-simple-plugin/src/main/resources/META-INF/spring/bundle-context.xml
===================================================================
---
csplugins/trunk/ucsd/kono/cy3-simple-plugin/src/main/resources/META-INF/spring/bundle-context.xml
2011-05-12 19:03:59 UTC (rev 25027)
+++
csplugins/trunk/ucsd/kono/cy3-simple-plugin/src/main/resources/META-INF/spring/bundle-context.xml
2011-05-12 19:48:20 UTC (rev 25028)
@@ -8,4 +8,10 @@
http://www.springframework.org/schema/context
http://www.springframework.org/schema/context/spring-context-2.5.xsd";>
+ <!-- Create an instance (bean) of the class -->
+ <bean id="menuAction"
class="org.cytoscape.myplugin.internal.MenuAction">
+ <!-- Inject an OSGi service as a constructor argument -->
+ <constructor-arg ref="cyApplicationManagerServiceRef" />
+ </bean>
+
</beans>
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