Author: mcreech
Date: 2011-05-19 09:06:08 -0700 (Thu, 19 May 2011)
New Revision: 25488
Added:
csplugins/trunk/agilent/creech/HyperEdge/build.xml-saved
Log:
v2.63
Copied: csplugins/trunk/agilent/creech/HyperEdge/build.xml-saved (from rev
25056, csplugins/trunk/agilent/creech/HyperEdge/build.xml)
===================================================================
--- csplugins/trunk/agilent/creech/HyperEdge/build.xml-saved
(rev 0)
+++ csplugins/trunk/agilent/creech/HyperEdge/build.xml-saved 2011-05-19
16:06:08 UTC (rev 25488)
@@ -0,0 +1,185 @@
+<?xml version="1.0"?>
+<project name="HyperEdge" default="jar-middleware" basedir=".">
+ <!-- TO USE THIS BUILD SCRIPT:
+ 1) You need to pass in the definition of 'cytoscape.dir'. For example:
+ -Dcytoscape.dir=../Cytoscape-2.8.1-x64
+ 2) Optional: pass in 'hee.jarlib.dir' with the location of
+ the HyperEdgeEditor's HyperEdge jar to have HyperEdgeEditor
+ updated.
+ NOTE: Until it is OK for the HyperEdge to be treated as a separate
+ plugin, don't use the 'jar' target. The problem is that plugin
+ dependencies in between the HyperEdgeEditor and HyperEdge
+ plugins. For now, the HyperEdgeEditor subsumes HyperEdge. -->
+
+ <!-- directory definitions -->
+ <property name="root.dir" value="."/>
+ <property name="src.dir" value="${root.dir}/src"/>
+ <property name="doc.dir" value="${root.dir}/doc"/>
+ <property name="jarlib.dir" value="${root.dir}/jarlib"/>
+ <property name="build.dir" value="${root.dir}/build"/>
+ <property name="build.classes.dir" value="${build.dir}/classes"/>
+ <property name="apidocs.dir" location="${build.dir}/api-docs" />
+
+ <property name="cytoscape.lib.dir" value = "${cytoscape.dir}/lib"/>
+ <!-- <property name="hee.jarlib.dir"
location="../HyperEdgeEditor/jarlib" /> -->
+ <property name="test.dir" location="${build.dir}/test" />
+ <property name="test.subdir" value="cytoscape/hyperedge/unittest" />
+ <property name="test.reports.dir" location="${test.dir}/reports" />
+ <property name="test.data.dir" location="${test.dir}/data" />
+ <property name="test.classes.root.dir" location="${build.classes.dir}"
/>
+
+ <!-- plugin definitions -->
+ <property name="plugin.name" value="${ant.project.name}" />
+ <property name="plugin.loc" value = "${build.dir}/${plugin.name}.jar"/>
+
+ <!-- compiler options -->
+ <property name="build.compiler" value="modern"/>
+
+ <!-- classpath with all lib, cytoscape, and cytoscape lib classes -->
+ <path id="plugin.classpath">
+ <fileset dir="${jarlib.dir}">
+ <include name="*.jar"/>
+ </fileset>
+ <fileset dir="${cytoscape.dir}">
+ <include name="*.jar"/>
+ </fileset>
+ </path>
+
+ <!-- Target to create the build directories prior to compilation -->
+ <target name="prepare">
+ <mkdir dir="${build.dir}"/>
+ <mkdir dir="${build.classes.dir}" />
+ <mkdir dir="${test.dir}" />
+ <mkdir dir="${test.data.dir}" />
+ <mkdir dir="${test.reports.dir}" />
+ <echo message="Finished prepare." />
+ </target>
+
+ <!-- Target to clean out all directories -->
+ <target name="clean"
+ description="Removes all generated jars, test, and class files.
Leaves API docs.">
+ <!-- would be better to delete build.dir excluding the api-docs
directory,
+ but can't get that to work: -->
+ <delete dir="${build.classes.dir}" />
+ <delete dir="${plugin.loc}" />
+ <delete dir="${test.dir}" />
+ </target>
+
+ <target name="clean-docs" description="Remove all generated java API
docs.">
+ <delete dir="${apidocs.dir}" />
+ </target>
+
+ <!-- Target to create the javadoc information -->
+ <target name="doc"
+ depends="clean-docs">
+ <mkdir dir="${apidocs.dir}"/>
+ <javadoc destdir="${apidocs.dir}"
+ classpathref="plugin.classpath"
+ Windowtitle="${plugin.name} API Docs"
+ header="${plugin.name}"
+ Private="yes">
+ <fileset dir="${src.dir}" defaultexcludes="yes">
+ <exclude name="${test.subdir}/**" />
+ <include name="**/*.java" />
+ </fileset>
+ <doctitle>${plugin.name} API Docs</doctitle>
+ </javadoc>
+ </target>
+
+
+ <target name="test" depends="compile" description="compile code and run
all tests and create a test report.">
+ <echo message="test.classes.root.dir =
${test.classes.root.dir}" />
+
+ <path id="test.classpath">
+ <path refid="plugin.classpath" />
+ <pathelement location="${build.classes.dir}" />
+ </path>
+ <junit printsummary="false" errorProperty="test.failed"
failureProperty="test.failed">
+ <!-- junit requires a different classpath then standard
compile: -->
+ <classpath refid="test.classpath" />
+ <formatter type="brief" usefile="false" />
+ <formatter type="xml" />
+ <batchtest todir="${test.data.dir}">
+ <fileset dir="${test.classes.root.dir}"
includes="**/${test.subdir}/*Test.class" />
+ </batchtest>
+ </junit>
+ <!-- create the nice HTML, browsable report of test results: -->
+ <junitreport todir="${test.data.dir}">
+ <fileset dir="${test.data.dir}">
+ <include name="TEST-*.xml" />
+ </fileset>
+ <report format="frames" todir="${test.reports.dir}" />
+ </junitreport>
+ <antcall target="display-test-report" />
+ <fail message="Test failed. Check report in
${test.reports.dir}/index.html." if="test.failed" />
+ <echo message="Tests passed. Check report in
${test.reports.dir}/index.html." />
+ </target>
+
+ <target name="display-test-report" description="Display test results in
a browser when desired." if="display-browser">
+ <exec executable="cmd">
+ <arg line="/c start ${test.reports.dir}/index.html" />
+ </exec>
+ </target>
+
+ <!-- Target to compile all Plug In Code -->
+ <target name="compile"
+ depends="prepare"
+ description="Compiles all PlugIn source code.">
+ <javac debug="Yes"
+ srcdir="${src.dir}"
+ destdir="${build.classes.dir}"
+ deprecation="true"
+ classpathref="plugin.classpath"/>
+ <echo message="Finished compile." />
+ </target>
+
+ <target name="add-data-files">
+ <!-- Don't allow HyperEdge to be its own plugin right now: -->
+ <!-- <copy todir="${build.classes.dir}/cytoscape/hyperedge"
preservelastmodified="true" file="plugin.props" /> -->
+ </target>
+
+ <!-- Create PlugIn Jar File -->
+ <!-- NOTE: Until it is OK for the HyperEdgeEditor to be
+ treated as a separate plugin, don't use jar. The problem is
+ plugin dependencies between the HyperEdgeEditor and HyperEdge
+ plugins. For now, the HyperEdgeEditor subsumes HyperEdge. -->
+ <target name="jar"
+ depends="clean,compile,add-data-files"
+ description="Compile code and create plugin ${plugin.name}
jar.">
+ <unjar dest="${build.dir}">
+ <fileset dir="${jarlib.dir}">
+ <include name="*.jar"/>
+ </fileset>
+ </unjar>
+ <jar destfile="${plugin.loc}">
+ <fileset dir="${build.classes.dir}">
+ <!-- skip items from the test directory: -->
+ <exclude name="${test.subdir}/" />
+ </fileset>
+ <!-- <manifest> -->
+ <!-- <attribute name="Cytoscape-Plugin" -->
+ <!-- value="cytoscape.hyperedge.HyperEdgePlugin"/>
-->
+ <!-- </manifest> -->
+ </jar>
+ </target>
+
+ <target name="jar-middleware" depends="clean,compile,add-data-files"
description="Create only a jar of the compiled code--don't include any other
needed libraries.">
+ <jar destfile="${plugin.loc}">
+ <fileset dir="${build.classes.dir}">
+ <!-- skip items from the test directory: -->
+ <exclude name="${test.subdir}/" />
+ <exclude
name="cytoscape/hyperedge/plugin.props" />
+ </fileset>
+ </jar>
+ <echo message="${lib.loc} is now complete." />
+ <antcall target="copy-jar-to-hee" />
+ </target>
+
+
+ <target name="all"
+ depends="clean,jar-middleware,doc,test"/>
+
+ <target name="copy-jar-to-hee" if="hee.jarlib.dir">
+ <copy file="${plugin.loc}" todir="${hee.jarlib.dir}"
preservelastmodified="true" />
+ </target>
+</project>
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