Author: ghuck
Date: 2011-05-25 17:23:57 -0700 (Wed, 25 May 2011)
New Revision: 25542
Modified:
csplugins/trunk/soc/ghuck/IgraphPlugin/src/cytoscape/plugins/igraph/IgraphPlugin.java
Log:
Modified:
csplugins/trunk/soc/ghuck/IgraphPlugin/src/cytoscape/plugins/igraph/IgraphPlugin.java
===================================================================
---
csplugins/trunk/soc/ghuck/IgraphPlugin/src/cytoscape/plugins/igraph/IgraphPlugin.java
2011-05-25 23:36:34 UTC (rev 25541)
+++
csplugins/trunk/soc/ghuck/IgraphPlugin/src/cytoscape/plugins/igraph/IgraphPlugin.java
2011-05-26 00:23:57 UTC (rev 25542)
@@ -29,14 +29,13 @@
import java.io.*;
import java.util.jar.*;
import java.util.zip.*;
+import java.lang.reflect.Field;
import javax.swing.JOptionPane;
import javax.swing.JPanel;
-/** ---------------------------LabelLayoutPlugin-----------------------------
- * Takes the current network and reorganizes it so that the new network is more
- * readable. This will be done through the repositioning of network labels,
- * and subtle repositioning of nodes.
+/** ---------------------------IgraphPlugin-----------------------------
+ * This plugin allows to call some of igraph functions from Cytoscape
* @author Gerardo Huck
*
*/
@@ -51,8 +50,11 @@
// Make sure Igraph library is extracted in the plugins folder
checkLib();
+ // Load igraph
+ loadIgraph();
+
// Add layouts
-
+ //CyLayouts.addLayout(new sampleLayout(), "Igraph");
}
private boolean isOldVersion(){
@@ -96,6 +98,54 @@
JOptionPane.showMessageDialog( Cytoscape.getDesktop(), message);
}
return;
+ } // checkLib
+
+
+ protected void loadIgraph() {
+
+ // Reset the "sys_paths" field of the ClassLoader to null.
+ Class clazz = ClassLoader.class;
+ Field field;
+ try {
+ field = clazz.getDeclaredField("sys_paths");
+ boolean accessible = field.isAccessible();
+ if (!accessible)
+ field.setAccessible(true);
+ Object original = field.get(clazz);
+
+ // Get original PATH
+ String orig_path = System.getProperty("java.library.path");
+
+ // Reset it to null so that whenever "System.loadLibrary" is
called, it will be reconstructed with the changed value
+ field.set(clazz, null);
+ try {
+ // Change the value and load the library.
+ System.setProperty("java.library.path", "./plugins" + ":" + ":"
+ orig_path);
+ System.loadLibrary("igraph");
+ }
+
+ catch (UnsatisfiedLinkError error){
+ String message = "Problem detected while loading igraph
Library.\n"
+ + error.getMessage()
+ + "\nPlease check your plugins folder.";
+ JOptionPane.showMessageDialog(Cytoscape.getDesktop(), message);
+
+ // Revert back the changes
+ field.set(clazz, original);
+ field.setAccessible(accessible);
+
+ // Exit
+ return;
+ }
+
+ finally {
+ // Revert back the changes
+ field.set(clazz, original);
+ field.setAccessible(accessible);
+ }
+ }
+ catch (Exception exception){
+ }
}
}
\ No newline at end of file
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