Author: ruschein
Date: 2011-06-06 10:48:03 -0700 (Mon, 06 Jun 2011)
New Revision: 25654
Added:
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/.classpath
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/.project
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/.settings/
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/.settings/org.eclipse.jdt.core.prefs
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/.settings/org.maven.ide.eclipse.prefs
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/osgi.bnd
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/pom.xml
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/src/
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/src/main/
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/src/main/assembly/
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/src/main/assembly/src.xml
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/src/main/java/
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/src/main/java/cytoscape/
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/src/main/java/cytoscape/internal/
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/src/main/java/cytoscape/internal/MenuAction.java
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/src/main/resources/
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/src/main/resources/META-INF/
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/src/main/resources/META-INF/spring/
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/src/main/resources/META-INF/spring/bundle-context-osgi.xml
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/src/main/resources/META-INF/spring/bundle-context.xml
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/target/
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/target/archive-tmp/
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/target/classes/
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/target/classes/META-INF/
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/target/classes/META-INF/MANIFEST.MF
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/target/classes/META-INF/spring/
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/target/classes/META-INF/spring/bundle-context-osgi.xml
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/target/classes/META-INF/spring/bundle-context.xml
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/target/classes/cytoscape/
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/target/classes/cytoscape/internal/
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/target/classes/cytoscape/internal/MenuAction.class
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/target/genomespace-plugin-cytoscape3-1.0-SNAPSHOT-jar-with-dependencies.jar
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/target/genomespace-plugin-cytoscape3-1.0-SNAPSHOT.jar
Log:
Do-nothing initial check-in.
Added: csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/.classpath
===================================================================
--- csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/.classpath
(rev 0)
+++ csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/.classpath
2011-06-06 17:48:03 UTC (rev 25654)
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<classpath>
+ <classpathentry kind="src" output="target/classes"
path="src/main/java"/>
+ <classpathentry excluding="**" kind="src" output="target/classes"
path="src/main/resources"/>
+ <classpathentry kind="src" output="target/test-classes"
path="src/test/java"/>
+ <classpathentry kind="con"
path="org.maven.ide.eclipse.MAVEN2_CLASSPATH_CONTAINER"/>
+ <classpathentry kind="con"
path="org.eclipse.jdt.launching.JRE_CONTAINER"/>
+ <classpathentry kind="output" path="target/classes"/>
+</classpath>
Added: csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/.project
===================================================================
--- csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/.project
(rev 0)
+++ csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/.project
2011-06-06 17:48:03 UTC (rev 25654)
@@ -0,0 +1,24 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<projectDescription>
+ <name>cy3-simple-plugin</name>
+ <comment></comment>
+ <projects>
+ </projects>
+ <buildSpec>
+ <buildCommand>
+ <name>org.eclipse.jdt.core.javabuilder</name>
+ <arguments>
+ </arguments>
+ </buildCommand>
+ <buildCommand>
+ <name>org.maven.ide.eclipse.maven2Builder</name>
+ <arguments>
+ </arguments>
+ </buildCommand>
+ </buildSpec>
+ <natures>
+ <nature>org.eclipse.pde.PluginNature</nature>
+ <nature>org.eclipse.jdt.core.javanature</nature>
+ <nature>org.maven.ide.eclipse.maven2Nature</nature>
+ </natures>
+</projectDescription>
Added:
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/.settings/org.eclipse.jdt.core.prefs
===================================================================
---
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/.settings/org.eclipse.jdt.core.prefs
(rev 0)
+++
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/.settings/org.eclipse.jdt.core.prefs
2011-06-06 17:48:03 UTC (rev 25654)
@@ -0,0 +1,3 @@
+#Thu May 12 11:36:17 PDT 2011
+eclipse.preferences.version=1
+org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
Added:
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/.settings/org.maven.ide.eclipse.prefs
===================================================================
---
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/.settings/org.maven.ide.eclipse.prefs
(rev 0)
+++
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/.settings/org.maven.ide.eclipse.prefs
2011-06-06 17:48:03 UTC (rev 25654)
@@ -0,0 +1,8 @@
+#Thu May 12 11:35:36 PDT 2011
+activeProfiles=
+eclipse.preferences.version=1
+fullBuildGoals=process-test-resources
+resolveWorkspaceProjects=true
+resourceFilterGoals=process-resources resources\:testResources
+skipCompilerPlugin=true
+version=1
Added: csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/osgi.bnd
===================================================================
--- csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/osgi.bnd
(rev 0)
+++ csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/osgi.bnd
2011-06-06 17:48:03 UTC (rev 25654)
@@ -0,0 +1,7 @@
+#-----------------------------------------------------------------
+# Use this file to add customized Bnd instructions for the bundle
+#-----------------------------------------------------------------
+
+Import-Package: *
+Private-Package: ${bundle.namespace}.internal.*
+Export-Package: ${bundle.namespace}
Added: csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/pom.xml
===================================================================
--- csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/pom.xml
(rev 0)
+++ csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/pom.xml
2011-06-06 17:48:03 UTC (rev 25654)
@@ -0,0 +1,171 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project xmlns="http://maven.apache.org/POM/4.0.0";
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance";
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0
http://maven.apache.org/maven-v4_0_0.xsd";>
+ <properties>
+
<bundle.symbolicName>cytoscape.genomespace-plugin-cytoscape3</bundle.symbolicName>
+ <bundle.namespace>cytoscape</bundle.namespace>
+ </properties>
+
+ <modelVersion>4.0.0</modelVersion>
+ <groupId>cytoscape</groupId>
+ <artifactId>genomespace-plugin-cytoscape3</artifactId>
+ <version>1.0-SNAPSHOT</version>
+ <name>${bundle.symbolicName} [${bundle.namespace}]</name>
+ <packaging>bundle</packaging>
+
+ <build>
+ <resources>
+ <resource>
+ <directory>src/main/resources</directory>
+ </resource>
+ </resources>
+ <!-- Cytoscape requires Java 1.6 -->
+ <plugins>
+ <plugin>
+ <groupId>org.apache.maven.plugins</groupId>
+ <artifactId>maven-compiler-plugin</artifactId>
+ <configuration>
+ <source>1.6</source>
+ <target>1.6</target>
+ <optimize>true</optimize>
+ <showWarnings>true</showWarnings>
+ <showDeprecation>true</showDeprecation>
+ <compilerArguments>
+ <Xmaxwarns>10000</Xmaxwarns>
+ <Xmaxerrs>10000</Xmaxerrs>
+ </compilerArguments>
+ </configuration>
+ </plugin>
+ <plugin>
+ <groupId>org.apache.maven.plugins</groupId>
+ <artifactId>maven-surefire-plugin</artifactId>
+ <configuration>
+
<redirectTestOutputToFile>true</redirectTestOutputToFile>
+ </configuration>
+ </plugin>
+ <plugin>
+ <groupId>org.ops4j</groupId>
+ <artifactId>maven-pax-plugin</artifactId>
+ <version>1.5</version>
+ <extensions>true</extensions>
+ </plugin>
+ <plugin>
+ <artifactId>maven-assembly-plugin</artifactId>
+ <version>2.2-beta-5</version>
+ <configuration>
+ <archive>
+ <manifestEntries>
+
<Cytoscape-Plugin>cytoscape.genomespace.GenomeSpacePlugin</Cytoscape-Plugin>
+ </manifestEntries>
+ </archive>
+ <descriptors>
+
<descriptor>src/main/assembly/src.xml</descriptor>
+ </descriptors>
+ </configuration>
+ <executions>
+ <execution>
+ <id>make-assembly</id>
+ <phase>package</phase>
+ <goals>
+ <goal>single</goal>
+ </goals>
+ </execution>
+ </executions>
+ </plugin>
+ <!-- Generates the OSGi metadata based on the osgi.bnd
file. -->
+ <plugin>
+ <groupId>org.apache.felix</groupId>
+ <artifactId>maven-bundle-plugin</artifactId>
+ <version>2.3.4</version>
+ <configuration>
+ <instructions>
+
<Bundle-SymbolicName>${bundle.symbolicName}</Bundle-SymbolicName>
+
<Bundle-Version>${pom.version}</Bundle-Version>
+
<_include>-osgi.bnd</_include>
+ </instructions>
+ </configuration>
+ </plugin>
+ </plugins>
+ </build>
+
+ <!-- Links to the Cytoscape Maven repositories. -->
+ <repositories>
+ <repository>
+ <id>cytoscape_snapshots</id>
+ <snapshots>
+ </snapshots>
+ <releases>
+ <enabled>false</enabled>
+ </releases>
+ <name>Cytoscape Snapshots</name>
+
<url>http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/</url>
+ </repository>
+ <repository>
+ <id>cytoscape_releases</id>
+ <snapshots>
+ <enabled>false</enabled>
+ </snapshots>
+ <releases>
+ </releases>
+ <name>Cytoscape Releases</name>
+
<url>http://cytoscape.wodaklab.org/nexus/content/repositories/releases/</url>
+ </repository>
+ </repositories>
+
+ <!-- Dependencies needed to compile this project. -->
+ <dependencies>
+ <dependency>
+ <groupId>org.cytoscape</groupId>
+ <artifactId>swing-application-api</artifactId>
+ <version>3.0.0-alpha2</version>
+ </dependency>
+ <dependency>
+ <groupId>org.cytoscape</groupId>
+ <artifactId>session-api</artifactId>
+ <version>3.0.0-alpha3</version>
+ </dependency>
+
+ <!-- Logging -->
+ <dependency>
+ <groupId>org.ops4j.pax.logging</groupId>
+ <artifactId>pax-logging-api</artifactId>
+ <version>1.5.2</version>
+ <scope>provided</scope>
+ </dependency>
+
+ <!-- dependencies specifically for unit testing -->
+ <dependency>
+ <groupId>junit</groupId>
+ <artifactId>junit</artifactId>
+ <version>4.8.2</version>
+ <scope>test</scope>
+ </dependency>
+ <dependency>
+ <groupId>org.cytoscape</groupId>
+ <artifactId>test-support</artifactId>
+ <version>3.0.0-alpha2</version>
+ <scope>test</scope>
+ </dependency>
+
+ <!-- dependencies specifically for unit testing -->
+ <dependency>
+ <groupId>com.sun.jersey</groupId>
+ <artifactId>jersey-json</artifactId>
+ <version>1.5-ea09</version>
+ </dependency>
+ <dependency>
+ <groupId>org.genomespace</groupId>
+ <artifactId>clientdevelopmentkit</artifactId>
+ <version>0.1-SNAPSHOT</version>
+ </dependency>
+ <dependency>
+ <groupId>org.genomespace</groupId>
+ <artifactId>analysistoolmgmt-messages</artifactId>
+ <version>0.1-SNAPSHOT</version>
+ </dependency>
+ <dependency>
+ <groupId>org.genomespace</groupId>
+ <artifactId>datamanager-messages</artifactId>
+ <version>0.1-SNAPSHOT</version>
+ </dependency>
+ </dependencies>
+</project>
Added:
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/src/main/assembly/src.xml
===================================================================
---
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/src/main/assembly/src.xml
(rev 0)
+++
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/src/main/assembly/src.xml
2011-06-06 17:48:03 UTC (rev 25654)
@@ -0,0 +1,18 @@
+<assembly
xmlns="http://maven.apache.org/plugins/maven-assembly-plugin/assembly/1.1.0";
+ xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance";
+
xsi:schemaLocation="http://maven.apache.org/plugins/maven-assembly-plugin/assembly/1.1.0
http://maven.apache.org/xsd/assembly-1.1.0.xsd";>
+ <id>jar-with-dependencies</id>
+ <formats>
+ <format>jar</format>
+ </formats>
+ <includeBaseDirectory>false</includeBaseDirectory>
+ <dependencySets>
+ <dependencySet>
+ <outputDirectory>/</outputDirectory>
+ <useProjectArtifact>true</useProjectArtifact>
+ <unpack>true</unpack>
+ <scope>runtime</scope>
+ <useTransitiveDependencies>false</useTransitiveDependencies>
+ </dependencySet>
+ </dependencySets>
+</assembly>
Added:
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/src/main/java/cytoscape/internal/MenuAction.java
===================================================================
---
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/src/main/java/cytoscape/internal/MenuAction.java
(rev 0)
+++
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/src/main/java/cytoscape/internal/MenuAction.java
2011-06-06 17:48:03 UTC (rev 25654)
@@ -0,0 +1,28 @@
+package cytoscape.internal;
+
+import java.awt.event.ActionEvent;
+
+import javax.swing.JOptionPane;
+
+import org.cytoscape.application.swing.AbstractCyAction;
+import org.cytoscape.session.CyApplicationManager;
+
+
+/**
+ * Creates a new menu item under Plugins menu section.
+ *
+ */
+public class MenuAction extends AbstractCyAction {
+
+ public MenuAction(final CyApplicationManager applicationManager, final
String menuTitle) {
+ super(menuTitle, applicationManager);
+ setPreferredMenu("Plugins");
+ }
+
+ public void actionPerformed(ActionEvent e) {
+
+ // Write your own function here.
+ JOptionPane.showMessageDialog(null, "Hello Cytoscape World!");
+
+ }
+}
Added:
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/src/main/resources/META-INF/spring/bundle-context-osgi.xml
===================================================================
---
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/src/main/resources/META-INF/spring/bundle-context-osgi.xml
(rev 0)
+++
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/src/main/resources/META-INF/spring/bundle-context-osgi.xml
2011-06-06 17:48:03 UTC (rev 25654)
@@ -0,0 +1,26 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<beans xmlns="http://www.springframework.org/schema/beans";
+ xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance";
xmlns:osgi="http://www.springframework.org/schema/osgi";
+ xsi:schemaLocation="
+ http://www.springframework.org/schema/beans
+ http://www.springframework.org/schema/beans/spring-beans-2.5.xsd
+ http://www.springframework.org/schema/osgi
+ http://www.springframework.org/schema/osgi/spring-osgi-1.0.xsd";
+ default-lazy-init="false">
+
+
+ <!-- ================= Import =========================== -->
+
+ <!-- Import OSGi service from service registry -->
+ <osgi:reference id="cyApplicationManagerServiceRef"
+ interface="org.cytoscape.session.CyApplicationManager" />
+
+
+ <!-- ================= Export =========================== -->
+
+ <!-- Export the instance as an OSGi service -->
+ <osgi:service id="menuActionService" ref="menuAction"
+ interface="org.cytoscape.application.swing.CyAction" />
+
+
+</beans>
Added:
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/src/main/resources/META-INF/spring/bundle-context.xml
===================================================================
---
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/src/main/resources/META-INF/spring/bundle-context.xml
(rev 0)
+++
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/src/main/resources/META-INF/spring/bundle-context.xml
2011-06-06 17:48:03 UTC (rev 25654)
@@ -0,0 +1,18 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<beans xmlns="http://www.springframework.org/schema/beans";
+ xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance";
+ xmlns:context="http://www.springframework.org/schema/context";
+ xsi:schemaLocation="
+ http://www.springframework.org/schema/beans
+ http://www.springframework.org/schema/beans/spring-beans-2.5.xsd
+ http://www.springframework.org/schema/context
+
http://www.springframework.org/schema/context/spring-context-2.5.xsd";>
+
+ <!-- Create an instance (bean) of the class -->
+ <bean id="menuAction" class="cytoscape.internal.MenuAction">
+ <!-- Inject an OSGi service as a constructor argument -->
+ <constructor-arg ref="cyApplicationManagerServiceRef" />
+ <constructor-arg value="Hello World Plugin" />
+ </bean>
+
+</beans>
Added:
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/target/classes/META-INF/MANIFEST.MF
===================================================================
---
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/target/classes/META-INF/MANIFEST.MF
(rev 0)
+++
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/target/classes/META-INF/MANIFEST.MF
2011-06-06 17:48:03 UTC (rev 25654)
@@ -0,0 +1,13 @@
+Manifest-Version: 1.0
+Built-By: ruschein
+Build-Jdk: 1.6.0_24
+Bundle-Version: 1.0.0.SNAPSHOT
+Tool: Bnd-1.15.0
+Bundle-Name: cytoscape.genomespace-plugin-cytoscape3 [cytoscape]
+Bnd-LastModified: 1307381966791
+Created-By: Apache Maven Bundle Plugin
+Bundle-ManifestVersion: 2
+Bundle-SymbolicName: cytoscape.genomespace-plugin-cytoscape3
+Import-Package: javax.swing,org.cytoscape.application.swing,org.cytosc
+ ape.session
+
Added:
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/target/classes/META-INF/spring/bundle-context-osgi.xml
===================================================================
---
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/target/classes/META-INF/spring/bundle-context-osgi.xml
(rev 0)
+++
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/target/classes/META-INF/spring/bundle-context-osgi.xml
2011-06-06 17:48:03 UTC (rev 25654)
@@ -0,0 +1,26 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<beans xmlns="http://www.springframework.org/schema/beans";
+ xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance";
xmlns:osgi="http://www.springframework.org/schema/osgi";
+ xsi:schemaLocation="
+ http://www.springframework.org/schema/beans
+ http://www.springframework.org/schema/beans/spring-beans-2.5.xsd
+ http://www.springframework.org/schema/osgi
+ http://www.springframework.org/schema/osgi/spring-osgi-1.0.xsd";
+ default-lazy-init="false">
+
+
+ <!-- ================= Import =========================== -->
+
+ <!-- Import OSGi service from service registry -->
+ <osgi:reference id="cyApplicationManagerServiceRef"
+ interface="org.cytoscape.session.CyApplicationManager" />
+
+
+ <!-- ================= Export =========================== -->
+
+ <!-- Export the instance as an OSGi service -->
+ <osgi:service id="menuActionService" ref="menuAction"
+ interface="org.cytoscape.application.swing.CyAction" />
+
+
+</beans>
Added:
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/target/classes/META-INF/spring/bundle-context.xml
===================================================================
---
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/target/classes/META-INF/spring/bundle-context.xml
(rev 0)
+++
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/target/classes/META-INF/spring/bundle-context.xml
2011-06-06 17:48:03 UTC (rev 25654)
@@ -0,0 +1,18 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<beans xmlns="http://www.springframework.org/schema/beans";
+ xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance";
+ xmlns:context="http://www.springframework.org/schema/context";
+ xsi:schemaLocation="
+ http://www.springframework.org/schema/beans
+ http://www.springframework.org/schema/beans/spring-beans-2.5.xsd
+ http://www.springframework.org/schema/context
+
http://www.springframework.org/schema/context/spring-context-2.5.xsd";>
+
+ <!-- Create an instance (bean) of the class -->
+ <bean id="menuAction" class="cytoscape.internal.MenuAction">
+ <!-- Inject an OSGi service as a constructor argument -->
+ <constructor-arg ref="cyApplicationManagerServiceRef" />
+ <constructor-arg value="Hello World Plugin" />
+ </bean>
+
+</beans>
Added:
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/target/classes/cytoscape/internal/MenuAction.class
===================================================================
(Binary files differ)
Property changes on:
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/target/classes/cytoscape/internal/MenuAction.class
___________________________________________________________________
Added: svn:mime-type
+ application/octet-stream
Added:
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/target/genomespace-plugin-cytoscape3-1.0-SNAPSHOT-jar-with-dependencies.jar
===================================================================
(Binary files differ)
Property changes on:
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/target/genomespace-plugin-cytoscape3-1.0-SNAPSHOT-jar-with-dependencies.jar
___________________________________________________________________
Added: svn:mime-type
+ application/octet-stream
Added:
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/target/genomespace-plugin-cytoscape3-1.0-SNAPSHOT.jar
===================================================================
(Binary files differ)
Property changes on:
csplugins/trunk/ucsd/ruschein/genomespace-plugin-cytoscape3/target/genomespace-plugin-cytoscape3-1.0-SNAPSHOT.jar
___________________________________________________________________
Added: svn:mime-type
+ application/octet-stream
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