Author: ruschein Date: 2011-06-07 13:23:39 -0700 (Tue, 07 Jun 2011) New Revision: 25663
Modified: csplugins/trunk/ucsd/ruschein/genomespace-libs-plugin-cytoscape3/pom.xml Log: Now with actual exported libs. Modified: csplugins/trunk/ucsd/ruschein/genomespace-libs-plugin-cytoscape3/pom.xml =================================================================== --- csplugins/trunk/ucsd/ruschein/genomespace-libs-plugin-cytoscape3/pom.xml 2011-06-07 19:53:43 UTC (rev 25662) +++ csplugins/trunk/ucsd/ruschein/genomespace-libs-plugin-cytoscape3/pom.xml 2011-06-07 20:23:39 UTC (rev 25663) @@ -1,209 +1,229 @@ <?xml version="1.0" encoding="UTF-8"?> -<project xmlns="http://maven.apache.org/POM/4.0.0"; xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"; xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd";> - <modelVersion>4.0.0</modelVersion> +<project xmlns="http://maven.apache.org/POM/4.0.0"; xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"; + xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd";> - <groupId>cytoscape</groupId> - <artifactId>genomespace-libs-plugin-cytoscape3</artifactId> - <version>1.0-SNAPSHOT</version> - <packaging>jar</packaging> - <name>GenomeSpace Libraries Plugin</name> + <properties> + <bundle.symbolicName>org.cytoscape.genomespace</bundle.symbolicName> + <bundle.namespace>org.cytoscape</bundle.namespace> + </properties> - <build> - <plugins> - <plugin> - <groupId>org.apache.maven.plugins</groupId> - <artifactId>maven-compiler-plugin</artifactId> - <configuration> - <source>1.6</source> - <target>1.6</target> - <optimize>true</optimize> - <showWarnings>true</showWarnings> - <showDeprecation>true</showDeprecation> - </configuration> - </plugin> - <plugin> - <groupId>org.ops4j</groupId> - <artifactId>maven-pax-plugin</artifactId> - <version>1.5</version> - <extensions>true</extensions> - </plugin> - <!-- Generates the OSGi metadata based on the osgi.bnd file. --> - <plugin> - <groupId>org.apache.felix</groupId> - <artifactId>maven-bundle-plugin</artifactId> - <version>${maven-bundle-plugin.version}</version> - <configuration> - <instructions> - <Bundle-SymbolicName>${bundle.symbolicName}</Bundle-SymbolicName> - <Bundle-Version>${project.version}</Bundle-Version> - <_include>-osgi.bnd</_include> - </instructions> - </configuration> - </plugin> - <plugin> - <artifactId>maven-assembly-plugin</artifactId> - <version>2.2-beta-5</version> - <configuration> - <archive> - <manifestEntries> - <Cytoscape-Plugin>cytoscape.genomespace.libs.GenomeSpaceLibsPlugin</Cytoscape-Plugin> - </manifestEntries> - </archive> - <descriptors> - <descriptor>src/main/assembly/src.xml</descriptor> - </descriptors> - </configuration> - <executions> - <execution> - <id>make-assembly</id> - <phase>package</phase> - <goals> - <goal>single</goal> - </goals> - </execution> - </executions> - </plugin> - </plugins> - </build> + <modelVersion>4.0.0</modelVersion> + <groupId>org.cytoscape</groupId> + <artifactId>genomespace</artifactId> + <version>1.0-SNAPSHOT</version> - <dependencies> - <dependency> - <groupId>cytoscape</groupId> - <artifactId>application</artifactId> - <version>2.8.1</version> - <scope>provided</scope> - </dependency> - <dependency> - <groupId>commons-codec</groupId> - <artifactId>commons-codec</artifactId> - <version>1.3</version> - </dependency> - <dependency> - <groupId>commons-httpclient</groupId> - <artifactId>commons-httpclient</artifactId> - <version>3.1</version> - </dependency> - <dependency> - <groupId>commons-io</groupId> - <artifactId>commons-io</artifactId> - <version>1.4</version> - </dependency> - <dependency> - <groupId>commons-lang</groupId> - <artifactId>commons-lang</artifactId> - <version>2.5</version> - </dependency> - <dependency> - <groupId>commons-logging</groupId> - <artifactId>commons-logging</artifactId> - <version>1.1.1</version> - </dependency> - <dependency> - <groupId>log4j</groupId> - <artifactId>log4j</artifactId> - <version>1.2.16</version> - </dependency> - <dependency> - <groupId>net.java.dev.jets3t</groupId> - <artifactId>jets3t</artifactId> - <version>0.7.4</version> - </dependency> - <dependency> - <groupId>org.codehaus.jettison</groupId> - <artifactId>jettison</artifactId> - <version>1.2</version> - </dependency> - <dependency> - <groupId>com.sun.jersey</groupId> - <artifactId>jersey-core</artifactId> - <version>1.5-ea09</version> - </dependency> - <dependency> - <groupId>com.sun.jersey</groupId> - <artifactId>jersey-client</artifactId> - <version>1.5-ea09</version> - </dependency> - <dependency> - <groupId>com.sun.jersey.contribs</groupId> - <artifactId>jersey-apache-client</artifactId> - <version>1.5-ea09</version> - </dependency> - <dependency> - <groupId>javax.ws.rs</groupId> - <artifactId>jsr311-api</artifactId> - <version>1.1.1</version> - </dependency> - <dependency> - <groupId>org.codehaus.jackson</groupId> - <artifactId>jackson-core-asl</artifactId> - <version>1.5.5</version> - </dependency> - <dependency> - <groupId>org.codehaus.jackson</groupId> - <artifactId>jackson-jaxrs</artifactId> - <version>1.5.5</version> - </dependency> - <dependency> - <groupId>org.codehaus.jackson</groupId> - <artifactId>jackson-mapper-asl</artifactId> - <version>1.5.5</version> - </dependency> - <dependency> - <groupId>org.codehaus.jackson</groupId> - <artifactId>jackson-xc</artifactId> - <version>1.5.5</version> - </dependency> - <dependency> - <groupId>com.jamesmurty.utils</groupId> - <artifactId>java-xmlbuilder</artifactId> - <version>0.3</version> - </dependency> - <dependency> - <groupId>stax</groupId> - <artifactId>stax-api</artifactId> - <version>1.0.1</version> - </dependency> - </dependencies> + <name>${bundle.symbolicName} [${bundle.namespace}]</name> + + <packaging>bundle</packaging> - <repositories> - <repository> - <id>java.net</id> - <name>Java.net</name> - <url>http://download.java.net/maven/2/</url> - </repository> - <repository> - <id>cytoscape_snapshots</id> - <snapshots> - <enabled>true</enabled> - </snapshots> - <releases> - <enabled>false</enabled> - </releases> - <name>Cytoscape Snapshots</name> - <url>http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/</url> - </repository> - <repository> - <id>cytoscape_releases</id> - <snapshots> - <enabled>false</enabled> - </snapshots> - <releases> - <enabled>true</enabled> - </releases> - <name>Cytoscape Releases</name> - <url>http://cytoscape.wodaklab.org/nexus/content/repositories/releases/</url> - </repository> - <repository> - <id>cytoscape_thirdparty</id> - <snapshots> - <enabled>false</enabled> - </snapshots> - <releases> - <enabled>true</enabled> - </releases> - <name>Cytoscape Third Party</name> - <url>http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty/</url> - </repository> - </repositories> + <build> + <resources> + <resource> + <directory>src/main/resources</directory> + </resource> + </resources> + <!-- Cytoscape requires Java 1.6 --> + <plugins> + <plugin> + <groupId>org.apache.maven.plugins</groupId> + <artifactId>maven-compiler-plugin</artifactId> + <configuration> + <source>1.6</source> + <target>1.6</target> + <optimize>true</optimize> + <showWarnings>true</showWarnings> + <showDeprecation>true</showDeprecation> + <compilerArguments> + <Xlint:-path></Xlint:-path> + <Xmaxwarns>10000</Xmaxwarns> + <Xmaxerrs>10000</Xmaxerrs> + </compilerArguments> + </configuration> + </plugin> + <plugin> + <groupId>org.apache.maven.plugins</groupId> + <artifactId>maven-surefire-plugin</artifactId> + <configuration> + <redirectTestOutputToFile>true</redirectTestOutputToFile> + </configuration> + </plugin> + <plugin> + <groupId>org.ops4j</groupId> + <artifactId>maven-pax-plugin</artifactId> + <version>1.5</version> + <extensions>true</extensions> + </plugin> + <!-- Generates the OSGi metadata based on the osgi.bnd file. --> + <plugin> + <groupId>org.apache.felix</groupId> + <artifactId>maven-bundle-plugin</artifactId> + <version>2.3.4</version> + <configuration> + <instructions> + <Bundle-SymbolicName>${bundle.symbolicName}</Bundle-SymbolicName> + <Bundle-Version>${pom.version}</Bundle-Version> + <_include>-osgi.bnd</_include> + </instructions> + </configuration> + </plugin> + <plugin> + <artifactId>maven-assembly-plugin</artifactId> + <version>2.2-beta-5</version> + <configuration> + <archive> + <manifestEntries> + <Cytoscape-Plugin>cytoscape.genomespace.libs.GenomeSpaceLibsPlugin</Cytoscape-Plugin> + </manifestEntries> + </archive> + <descriptors> + <descriptor>src/main/assembly/src.xml</descriptor> + </descriptors> + </configuration> + <executions> + <execution> + <id>make-assembly</id> + <phase>package</phase> + <goals> + <goal>single</goal> + </goals> + </execution> + </executions> + </plugin> + </plugins> + </build> + <repositories> + <!-- Links to the Cytoscape Maven repositories. --> + <repository> + <id>cytoscape_snapshots</id> + <snapshots> + </snapshots> + <releases> + <enabled>false</enabled> + </releases> + <name>Cytoscape Snapshots</name> + <url>http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/</url> + </repository> + <repository> + <id>cytoscape_releases</id> + <snapshots> + <enabled>false</enabled> + </snapshots> + <releases> + </releases> + <name>Cytoscape Releases</name> + <url>http://cytoscape.wodaklab.org/nexus/content/repositories/releases/</url> + </repository> + <repository> + <id>cytoscape_thirdparty</id> + <snapshots> + <enabled>false</enabled> + </snapshots> + <releases> + <enabled>true</enabled> + </releases> + <name>Cytoscape Third Party</name> + <url>http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty/</url> + </repository> + <!-- Other Maven repositories. --> + <repository> + <id>java.net</id> + <name>Java.net</name> + <url>http://download.java.net/maven/2/</url> + </repository> + </repositories> + + <!-- Dependencies needed to compile this project. --> + <dependencies> + <dependency> + <groupId>commons-codec</groupId> + <artifactId>commons-codec</artifactId> + <version>1.3</version> + </dependency> + <dependency> + <groupId>commons-httpclient</groupId> + <artifactId>commons-httpclient</artifactId> + <version>3.1</version> + </dependency> + <dependency> + <groupId>commons-io</groupId> + <artifactId>commons-io</artifactId> + <version>1.4</version> + </dependency> + <dependency> + <groupId>commons-lang</groupId> + <artifactId>commons-lang</artifactId> + <version>2.5</version> + </dependency> + <dependency> + <groupId>commons-logging</groupId> + <artifactId>commons-logging</artifactId> + <version>1.1.1</version> + </dependency> + <dependency> + <groupId>log4j</groupId> + <artifactId>log4j</artifactId> + <version>1.2.16</version> + </dependency> + <dependency> + <groupId>net.java.dev.jets3t</groupId> + <artifactId>jets3t</artifactId> + <version>0.7.4</version> + </dependency> + <dependency> + <groupId>org.codehaus.jettison</groupId> + <artifactId>jettison</artifactId> + <version>1.2</version> + </dependency> + <dependency> + <groupId>com.sun.jersey</groupId> + <artifactId>jersey-core</artifactId> + <version>1.5-ea09</version> + </dependency> + <dependency> + <groupId>com.sun.jersey</groupId> + <artifactId>jersey-client</artifactId> + <version>1.5-ea09</version> + </dependency> + <dependency> + <groupId>com.sun.jersey.contribs</groupId> + <artifactId>jersey-apache-client</artifactId> + <version>1.5-ea09</version> + </dependency> + <dependency> + <groupId>javax.ws.rs</groupId> + <artifactId>jsr311-api</artifactId> + <version>1.1.1</version> + </dependency> + <dependency> + <groupId>org.codehaus.jackson</groupId> + <artifactId>jackson-core-asl</artifactId> + <version>1.5.5</version> + </dependency> + <dependency> + <groupId>org.codehaus.jackson</groupId> + <artifactId>jackson-jaxrs</artifactId> + <version>1.5.5</version> + </dependency> + <dependency> + <groupId>org.codehaus.jackson</groupId> + <artifactId>jackson-mapper-asl</artifactId> + <version>1.5.5</version> + </dependency> + <dependency> + <groupId>org.codehaus.jackson</groupId> + <artifactId>jackson-xc</artifactId> + <version>1.5.5</version> + </dependency> + <dependency> + <groupId>com.jamesmurty.utils</groupId> + <artifactId>java-xmlbuilder</artifactId> + <version>0.3</version> + </dependency> + <dependency> + <groupId>stax</groupId> + <artifactId>stax-api</artifactId> + <version>1.0.1</version> + </dependency> + </dependencies> </project> -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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